Rorug05G0494400

Carboxylesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000184
Physical Location & Seq
Reverse (-)
67698056 .. 67698799
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0494400.1

Sequence Viewer

Length: 744 bp
ATGGATCGATGTAAACACCTTATTAAAGAGCAGGCTAAAGCTTCTACTTATTCCAAGGGGGTTGTTGGTAGTGAAAGCCTAAAGCCCAAGGTTCGGCAAGAGTACAGAGTTAAGGCCAAACATCAAGTTCAGCTGCGTTCTCCTGATATTGCAGAACAACCTATTATTGATGATCATTCTAAGAAGGATGCCGAAATTGCAAAGTTTGCTGACAATGTTATTCAAGAGGCTGTGAACCAGGAACTTAACCGTATTGCTAATGTGGTTGTCAATGACACCATTGTCAATCATGTGGATATACCTGCAGAACCTGTGTTACAGCAACTTTCCTCCGGGAGAATGGAGCAGGGGTCTCATTCATCATCATCCTCTTCAGATGATGAACGTACTATATCTGACACATTGGGTTCTCATGTCAGCAATATCATTATCAATCAATCAACTTCATGGGTGCGCAGGCCTTGGCACCGTCTGGTTGAGGAGGAACAAGAGGGTGATTTGAGTGATTCAAGTGCTACTCAGCTACAGAGGCCTCTTATTCGTTCGTCAAATCATGTTAATGCTGTTTTAGAGCAAGGGAATGTTAGTGAAGCTTCCTTTAATCTAGCTCTAGAAGCCCAAGAGGTGGTAACTTCGAAAGTGTTAACGAAGTCCCAAAGGAAACGTCTAAGGAAGAAAGTTCGTGAGGCTTTGAATGACTCATCAACCCCTCAGAGGGATGCCATTTTATCATCGTCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

6.72

Isoelectric Point (pI)

51.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 281
Acc16I TGCGCA 1 cut(s) 455
Acc36I ACCTGC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 625
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 104, 388
AfiI CCNNNNNNNGG 4 cut(s) 93, 625, 714, 715
AgsI TTSAA 3 cut(s) 224, 510, 694
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 5 cut(s) 41, 133, 523, 593, 608
AluI AGCT 5 cut(s) 41, 133, 523, 593, 608
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 311
AoxI GGCC 3 cut(s) 114, 458, 530
ApeKI GCWGC 1 cut(s) 133
ArsI GACNNNNNNTTYG 2 cut(s) 649, 681
AspLEI GCGC 1 cut(s) 456
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 506
AsuII TTCGAA 1 cut(s) 635
BanI GGYRCC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 120
BciT130I CCWGG 1 cut(s) 239
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 357
BfaI CTAG 2 cut(s) 605, 611
BfmI CTRYAG 2 cut(s) 303, 524
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 239, 334
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 2 cut(s) 239, 334
BmsI GCATC 2 cut(s) 178, 709
Bpu14I TTCGAA 1 cut(s) 635
BpuMI CCSGG 1 cut(s) 334
Bsa29I ATCGAT 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 357
BsaJI CCNNGG 3 cut(s) 54, 87, 461
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 4 cut(s) 93, 625, 714, 715
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 54, 87, 461
BseGI GGATG 3 cut(s) 193, 365, 724
BseLI CCNNNNNNNGG 4 cut(s) 93, 625, 714, 715
BseMII CTCAG 2 cut(s) 533, 725
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 3 cut(s) 116, 460, 532
BshNI GGYRCC 1 cut(s) 465
BshVI ATCGAT 1 cut(s) 7
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 4 cut(s) 93, 625, 714, 715
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 3 cut(s) 116, 460, 532
Bso31I GGTCTC 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 635
Bsp143I GATC 2 cut(s) 4, 172
BspANI GGCC 3 cut(s) 116, 460, 532
BspCNI CTCAG 2 cut(s) 532, 724
BspDI ATCGAT 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 467
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 54, 87, 461
BssMI GATC 2 cut(s) 4, 172
BssT1I CCWWGG 3 cut(s) 54, 87, 461
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 2 cut(s) 251, 470
Bst6I CTCTTC 1 cut(s) 376
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 33, 458
BstDEI CTNAG 4 cut(s) 180, 519, 668, 711
BstF5I GGATG 3 cut(s) 193, 365, 724
BstHHI GCGC 1 cut(s) 456
BstKTI GATC 2 cut(s) 7, 175
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 2 cut(s) 4, 172
BstMWI GCNNNNNNNGC 4 cut(s) 197, 206, 529, 614
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 237, 332
BstSFI CTRYAG 2 cut(s) 303, 524
BstV1I GCAGC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 7
BsuRI GGCC 3 cut(s) 116, 460, 532
BsuTUI ATCGAT 1 cut(s) 7
BtsCI GGATG 3 cut(s) 193, 365, 724
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 33, 458
CaiI CAGNNNCTG 1 cut(s) 311
CfoI GCGC 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 7
Csp6I GTAC 2 cut(s) 103, 387
CviAII CATG 4 cut(s) 290, 413, 447, 554
CviQI GTAC 2 cut(s) 103, 387
DdeI CTNAG 4 cut(s) 180, 519, 668, 711
DpnI GATC 2 cut(s) 6, 174
DpnII GATC 2 cut(s) 4, 172
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 3 cut(s) 54, 87, 461
Eco147I AGGCCT 2 cut(s) 460, 532
Eco31I GGTCTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 3 cut(s) 54, 87, 461
ErhI CCWWGG 3 cut(s) 54, 87, 461
FaeI CATG 4 cut(s) 293, 416, 450, 557
FaiI YATR 6 cut(s) 291, 299, 392, 414, 448, 555
FaqI GGGAC 1 cut(s) 637
FatI CATG 4 cut(s) 289, 412, 446, 553
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 3 cut(s) 200, 352, 731
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 605, 611
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 1 cut(s) 455
GluI GCNGC 1 cut(s) 134
HaeIII GGCC 3 cut(s) 116, 460, 532
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 456
Hin1II CATG 4 cut(s) 293, 416, 450, 557
Hin6I GCGC 1 cut(s) 454
HinP1I GCGC 1 cut(s) 454
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 2 cut(s) 39, 591
HinfI GANTC 2 cut(s) 506, 698
HpaI GTTAAC 1 cut(s) 645
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 3 cut(s) 14, 235, 645
Hpy188I TCNGA 3 cut(s) 376, 397, 714
Hpy188III TCNNGA 4 cut(s) 143, 224, 611, 683
Hpy8I GTNNAC 3 cut(s) 14, 235, 645
HpyAV CCTTC 1 cut(s) 178
HpyCH4III ACNGT 2 cut(s) 251, 470
HpyCH4IV ACGT 2 cut(s) 385, 664
HpyCH4V TGCA 3 cut(s) 152, 200, 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 197, 206, 529, 614
HpyF3I CTNAG 4 cut(s) 180, 519, 668, 711
HpySE526I ACGT 2 cut(s) 385, 664
Hsp92II CATG 4 cut(s) 293, 416, 450, 557
HspAI GCGC 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 172
KspAI GTTAAC 1 cut(s) 645
Kzo9I GATC 2 cut(s) 4, 172
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 2 cut(s) 178, 709
MaeI CTAG 2 cut(s) 605, 611
MaeII ACGT 2 cut(s) 385, 664
MaeIII GTNAC 2 cut(s) 315, 628
MalI GATC 2 cut(s) 6, 174
MboI GATC 2 cut(s) 4, 172
MboII GAAGA 2 cut(s) 363, 685
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 692
MseI TTAA 6 cut(s) 24, 111, 246, 558, 600, 644
MslI CAYNNNNRTG 1 cut(s) 558
MspA1I CMGCKG 1 cut(s) 133
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 239, 334
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 4 cut(s) 197, 206, 529, 614
NciI CCSGG 1 cut(s) 334
NdeII GATC 2 cut(s) 4, 172
NlaIII CATG 4 cut(s) 293, 416, 450, 557
NlaIV GGNNCC 1 cut(s) 467
NsbI TGCGCA 1 cut(s) 455
NspV TTCGAA 1 cut(s) 635
PceI AGGCCT 2 cut(s) 460, 532
PfeI GAWTC 1 cut(s) 506
PflMI CCANNNNNTGG 1 cut(s) 625
PfoI TCCNGGA 1 cut(s) 332
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 692
PpsI GAGTC 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 467
PsrI GAACNNNNNNTAC 2 cut(s) 300, 332
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 311
PvuII CAGCTG 1 cut(s) 133
RsaI GTAC 2 cut(s) 104, 388
RsaNI GTAC 2 cut(s) 103, 387
RseI CAYNNNNRTG 1 cut(s) 558
SaqAI TTAA 6 cut(s) 24, 111, 246, 558, 600, 644
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 4, 172
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 239, 334
SfaNI GCATC 2 cut(s) 178, 709
SfcI CTRYAG 2 cut(s) 303, 524
SfuI TTCGAA 1 cut(s) 635
SmiMI CAYNNNNRTG 1 cut(s) 558
Sse9I AATT 1 cut(s) 195
SseBI AGGCCT 2 cut(s) 460, 532
SspMI CTAG 2 cut(s) 605, 611
StuI AGGCCT 2 cut(s) 460, 532
StyD4I CCNGG 2 cut(s) 237, 332
StyI CCWWGG 3 cut(s) 54, 87, 461
TaaI ACNGT 2 cut(s) 251, 470
TaiI ACGT 2 cut(s) 388, 667
TaqI TCGA 2 cut(s) 7, 635
TasI AATT 1 cut(s) 195
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 6 cut(s) 24, 111, 246, 558, 600, 644
Tru9I TTAA 6 cut(s) 24, 111, 246, 558, 600, 644
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 3 cut(s) 348, 396, 435
Van91I CCANNNNNTGG 1 cut(s) 625
XbaI TCTAGA 1 cut(s) 610
XspI CTAG 2 cut(s) 605, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.