Rorug03G0027600

Carboxylesterase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
2130975 .. 2131966
992 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0027600.1

Sequence Viewer

Length: 348 bp
ATGCTTCTCGGAGATTCGAGAAATCGGGAAGGTCTAGAAAACCGTTTGGAGGCCAACGTGGTTCAGGTAATTATAATAAACAACCATGGCGGCATGGCCGATGGTGGACATTTCCTTCACAGAGTCATGTCATACCTCGTCAATGAGCTTCTGGTCGATAGCCTCGCCAACAGCAGATCATTCCATGGGTTTGCTCTGAGGACATCAAAGCAAATGGATGAGCTTTCAAATTTGGTTGCCAAGAAGAAGGAACAACTTGCCGAGCAGATGAAGGATATCTCCAGTTTGGTTGTCATCACACCATCTGTATACATCCTTCTGTCTTTGAGAGCTATTGAGAGAAAATAG

Protein Analysis

115

Amino Acids

12.9

Weight (kDa)

8.11

Isoelectric Point (pI)

40.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccI GTMKAC 1 cut(s) 309
AciI CCGC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 228
AluBI AGCT 3 cut(s) 148, 223, 332
AluI AGCT 3 cut(s) 148, 223, 332
AoxI GGCC 2 cut(s) 51, 96
ApoI RAATTY 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 300, 332
BccI CCATC 2 cut(s) 95, 310
BfaI CTAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 91
BlsI GCNGC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 85, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 85, 184
BseGI GGATG 2 cut(s) 223, 312
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 1 cut(s) 282
BshFI GGCC 2 cut(s) 53, 98
BslI CCNNNNNNNGG 1 cut(s) 49
BsnI GGCC 2 cut(s) 53, 98
Bsp143I GATC 1 cut(s) 176
Bsp19I CCATGG 2 cut(s) 85, 184
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 53, 98
BspCNI CTCAG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 85, 184
BssMI GATC 1 cut(s) 176
BssNAI GTATAC 1 cut(s) 310
BssT1I CCWWGG 2 cut(s) 85, 184
Bst1107I GTATAC 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 2 cut(s) 85, 184
BstF5I GGATG 2 cut(s) 223, 312
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 53, 98
BtgI CCRYGG 2 cut(s) 85, 184
BtsCI GGATG 2 cut(s) 223, 312
CviAII CATG 4 cut(s) 86, 94, 127, 185
CviJI RGCY 6 cut(s) 53, 98, 148, 162, 223, 332
CviKI_1 RGCY 6 cut(s) 53, 98, 148, 162, 223, 332
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 85, 184
Eco32I GATATC 1 cut(s) 277
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 85, 184
ErhI CCWWGG 2 cut(s) 85, 184
FaeI CATG 4 cut(s) 89, 97, 130, 188
FaiI YATR 7 cut(s) 74, 87, 95, 128, 133, 186, 310
FatI CATG 4 cut(s) 85, 93, 126, 184
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 91
FokI GGATG 2 cut(s) 230, 299
Fsp4HI GCNGC 1 cut(s) 91
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 265
HaeIII GGCC 2 cut(s) 53, 98
Hin1II CATG 4 cut(s) 89, 97, 130, 188
HinfI GANTC 2 cut(s) 14, 123
Hpy166II GTNNAC 2 cut(s) 107, 310
Hpy188I TCNGA 2 cut(s) 11, 198
Hpy188III TCNNGA 3 cut(s) 18, 26, 35
Hpy8I GTNNAC 2 cut(s) 107, 310
HpyAV CCTTC 5 cut(s) 23, 125, 241, 265, 326
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 57
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 4 cut(s) 89, 97, 130, 188
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 3 cut(s) 50, 137, 295
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 1 cut(s) 256
MluCI AATT 2 cut(s) 69, 229
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 4 cut(s) 43, 146, 173, 192
NcoI CCATGG 2 cut(s) 85, 184
NdeII GATC 1 cut(s) 176
NlaIII CATG 4 cut(s) 89, 97, 130, 188
NmeAIII GCCGAG 1 cut(s) 286
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 92
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PsiI TTATAA 1 cut(s) 74
SatI GCNGC 1 cut(s) 91
Sau3AI GATC 1 cut(s) 176
SchI GAGTC 1 cut(s) 132
SetI ASST 7 cut(s) 34, 60, 69, 138, 150, 225, 334
Sse9I AATT 2 cut(s) 69, 229
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 2 cut(s) 85, 184
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 17, 156
TasI AATT 2 cut(s) 69, 229
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 284
XapI RAATTY 1 cut(s) 229
XbaI TCTAGA 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.