Rmu_co8201470.1_g000001

Carboxylesterase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8201470.1
Physical Location & Seq
Reverse (-)
329 .. 679
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8201470.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atggagcggacagactggatgtggaaggcgtttttgccggaggggtcggatcgggaccacccggtggtgaatgtgttcgggccgaacgccgtggatattttgggggtcgattttccggcgacgattgtgtttgttgggggcttggatcagttgcaagattggcagaagaggtactacgagggattgaaaaaacgcgggaaacaagccgagctggtggtgtttccgaatgccattcacactttctatgcttatcccgagttggatgactcttctgtgtttattcacagagtcagggattttgtacaagcccatgcaattattcaatgcaactcaaactcaacaataatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.31

Weight (kDa)

5.42

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23530
fragaria_vesca FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 7
AccII CGCG 1 cut(s) 195
AciI CCGC 2 cut(s) 7, 195
AclWI GGATC 2 cut(s) 57, 153
AdeI CACNNNGTG 1 cut(s) 64
AfaI GTAC 2 cut(s) 173, 303
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 2 cut(s) 187, 323
AluBI AGCT 1 cut(s) 211
AluI AGCT 1 cut(s) 211
AlwI GGATC 2 cut(s) 57, 153
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 55, 80
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 79
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 55
BarI GAAGNNNNNNTAC 2 cut(s) 158, 190
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 62
Bme1390I CCNGG 1 cut(s) 62
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 55, 80
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 24, 268
BseLI CCNNNNNNNGG 1 cut(s) 64
BseNI ACTGG 1 cut(s) 20
Bsh1236I CGCG 1 cut(s) 195
BshFI GGCC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 3 cut(s) 38, 62, 116
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 1 cut(s) 64
BsmFI GGGAC 1 cut(s) 68
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 1 cut(s) 82
BsoBI CYCGRG 1 cut(s) 254
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 2 cut(s) 49, 145
BspACI CCGC 2 cut(s) 7, 195
BspANI GGCC 1 cut(s) 82
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 2 cut(s) 57, 153
BsrBI CCGCTC 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 301
BsrI ACTGG 1 cut(s) 20
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 49, 145
Bst6I CTCTTC 2 cut(s) 161, 274
BstAUI TGTACA 1 cut(s) 301
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 24, 268
BstFNI CGCG 1 cut(s) 195
BstKTI GATC 2 cut(s) 52, 148
BstMBI GATC 2 cut(s) 49, 145
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 24, 268
Cfr13I GGNCC 2 cut(s) 55, 80
Csp6I GTAC 2 cut(s) 172, 302
CviAII CATG 1 cut(s) 311
CviJI RGCY 5 cut(s) 82, 141, 206, 211, 308
CviKI_1 RGCY 5 cut(s) 82, 141, 206, 211, 308
CviQI GTAC 2 cut(s) 172, 302
DpnI GATC 2 cut(s) 51, 147
DpnII GATC 2 cut(s) 49, 145
DraIII CACNNNGTG 1 cut(s) 64
Eam1104I CTCTTC 2 cut(s) 161, 274
EarI CTCTTC 2 cut(s) 161, 274
Eco47I GGWCC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 254
FaeI CATG 1 cut(s) 314
FaiI YATR 2 cut(s) 246, 312
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 188
FokI GGATG 2 cut(s) 31, 275
HaeIII GGCC 1 cut(s) 82
HapII CCGG 3 cut(s) 38, 62, 116
Hin1II CATG 1 cut(s) 314
HinfI GANTC 2 cut(s) 266, 288
HpaII CCGG 3 cut(s) 38, 62, 116
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 49, 225
Hpy188III TCNNGA 2 cut(s) 53, 254
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 154, 314, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92II CATG 1 cut(s) 314
Kzo9I GATC 2 cut(s) 49, 145
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 51, 75, 129, 197, 277
MalI GATC 2 cut(s) 51, 147
MbiI CCGCTC 1 cut(s) 7
MboI GATC 2 cut(s) 49, 145
MboII GAAGA 2 cut(s) 178, 261
MluCI AATT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 260, 297
MmeI TCCRAC 2 cut(s) 27, 240
MnlI CCTC 3 cut(s) 34, 162, 172
MroXI GAANNNNTTC 1 cut(s) 74
MspI CCGG 3 cut(s) 38, 62, 116
MspR9I CCNGG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 232
MvnI CGCG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 62
NdeII GATC 2 cut(s) 49, 145
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 1 cut(s) 56
NmeAIII GCCGAG 1 cut(s) 232
PctI GAATGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 64
PleI GAGTC 2 cut(s) 260, 296
PpsI GAGTC 2 cut(s) 260, 296
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 55, 80
RsaI GTAC 2 cut(s) 173, 303
RsaNI GTAC 2 cut(s) 172, 302
Sau3AI GATC 2 cut(s) 49, 145
Sau96I GGNCC 2 cut(s) 55, 80
SchI GAGTC 2 cut(s) 260, 297
ScrFI CCNGG 1 cut(s) 62
SetI ASST 2 cut(s) 173, 213
SinI GGWCC 1 cut(s) 55
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 7, 195
StyD4I CCNGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 108
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 55
XmnI GAANNNNTTC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.