Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000184

Physical Location & Seq

Genomic Coordinates Forward (+)

24429993 .. 24430613

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G010810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGCTTCCTCGACTTACGCTCCTCCGCCACTCCCTCAGCCCCCTACAAAGGCGTCACCACCTCCGACGTCACCGTCGACCAAACCCGCAACCTCTGGTTCCGCTTCTTCGTCCCTTCTACGACGTCGTCTTCCCCCGCCTCTTTACCCGTCGTCGTTTTCTTCCACGGCGGCGGCTTCAGCTTTCTCAGCCCCGACTCCTACGCCTACGACGCCGTCTGCCGCAAATTGGCCCGCGAAATCCCCGCCGTCGTAGTCTCCGTCAACTACCACCTCTCCCCAGAGCACGGCTACCCCTGCCAGTACGACGACGGCCTCGACGTCCTCAAATTGCTCGACCAAAACCCCGACTCCCTCCTTGACCTCGCTGACTGCTCCCGCTGCTTCCTCGCCGGAGACAGCGCCTGCGCGAACATTGCCCACCACGTGGCGGTGCGAGCCTGCCGCGAGCCGTTTCTGGTTGTGAAACCAATTGGGTTGATATCGATCCAACCGTTCTTCGGCGGCGAGGAACTGACCGAGTCCGAGATCCGACTCGAGGGCTCGCCGCTGGTGTCGGTGACCCGAACCGATTGGCTGCGGAAGACTTTCTTGCCACAAAACCCAGAAACCCCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009056 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052689 GO:0060560 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04075 ko05134 map04075 map05134

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

206

Amino Acids

22.65

Weight (kDa)

5.27

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	36 - 93	3.4e-07	Carboxylesterase family
BD-FAE	PF20434	46 - 146	1.7e-07	BD-FAE
Abhydrolase_3	PF07859	52 - 201	3.1e-35	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23530
fragaria_vesca	FvH4_2g00440 FvH4_2g09720 FvH4_3g28580 FvH4_3g28600
malus_domestica	MD00G1203100.v1.1 MD03G1173000.v1.1 MD03G1173100.v1.1 MD05G1060700.v1.1 MD10G1068500.v1.1 MD11G1191000.v1.1
prunus_persica	Prupe.4G252600_v2.0.a1 Prupe.8G004100_v2.0.a1 Prupe.8G090400_v2.0.a1
pyrus_communis	pycom03g13020 pycom05g05160 pycom10g05450
rosa_chinensis	RchiOBHm_Chr2g0154081 RchiOBHm_Chr3g0458401 RchiOBHm_Chr4g0422631 RchiOBHm_Chr5g0013851 RchiOBHm_Chr5g0052531 RchiOBHm_Chr5g0052561 RchiOBHm_Chr5g0062251 RchiOBHm_Chr6g0249211 RchiOBHm_Chr6g0249811 RchiOBHm_Chr6g0250041 RchiOBHm_Chr6g0250061 RchiOBHm_Chr6g0250071 RchiOBHm_Chr6g0250101 RchiOBHm_Chr6g0250261 RchiOBHm_Chr6g0250271 RchiOBHm_Chr6g0250281 RchiOBHm_Chr6g0250341 RchiOBHm_Chr6g0250361 RchiOBHm_Chr6g0266021 RchiOBHm_Chr7g0181171 RchiOBHm_Chr7g0181191
rosa_laevigata	RLG00000002200 RLG00000007738 RLG00000014126 RLG00000014137 RLG00000015547 RLG00000015553 RLG00000019990 RLG00000022548 RLG00000025161 RLG00000034812 RLG00000034813 RLG00000035546
rosa_multiflora	Rmu_co8002032.1_g000001 Rmu_co8108364.1_g000001 Rmu_co8201470.1_g000001 Rmu_co8274775.1_g000001 Rmu_sc0000441.1_g000004 Rmu_sc0000704.1_g000006 Rmu_sc0000704.1_g000038 Rmu_sc0000704.1_g000044 Rmu_sc0000776.1_g000016 Rmu_sc0000830.1_g000025 Rmu_sc0001147.1_g000015 Rmu_sc0001147.1_g000016 Rmu_sc0001209.1_g000044 Rmu_sc0002200.1_g000049 Rmu_sc0002311.1_g000008 Rmu_sc0003627.1_g000015 Rmu_sc0004691.1_g000004 Rmu_sc0005070.1_g000006 Rmu_sc0005798.1_g000012 Rmu_sc0006032.1_g000002 Rmu_sc0006032.1_g000009 Rmu_sc0006110.1_g000003 Rmu_sc0006803.1_g000002 Rmu_sc0007793.1_g000026 Rmu_sc0008209.1_g000004 Rmu_sc0008209.1_g000007 Rmu_sc0009002.1_g000003 Rmu_sc0009002.1_g000008 Rmu_sc0013424.1_g000007 Rmu_sc0013809.1_g000001 Rmu_sc0015580.1_g000005 Rmu_sc0015938.1_g000005 Rmu_sc0022309.1_g000001 Rmu_ssc0000066.1_g000013 Rmu_ssc0000409.1_g000028
rosa_roxburghii	Rroxscaffold_174G00435120 Rroxscaffold_1G00028400 Rroxscaffold_1G00028440 Rroxscaffold_1G00028450 Rroxscaffold_6G00421100 Rroxscaffold_7G00202080 Rroxscaffold_7G00216660 Rroxscaffold_7G00217380
rosa_rugosa	Rorug03G0027600 Rorug05G0270900 Rorug05G0271000 Rorug05G0347300 Rorug05G0494400 Rorug05G0494500 Rorug05G0495500 Rorug06G0022600 Rorug06G0324400 Rorug06G0439500
rosa_samantha	Rh1CG424500 Rh2AG352300 Rh2BG391600 Rh3AG087400 Rh3CG090500 Rh3DG091100 Rh3DG119700 Rh4CG247600 Rh4DG207900 Rh5AG408000 Rh5BG354600 Rh5BG354800 Rh5BG421800 Rh5BG423400 Rh5CG115500 Rh5CG380400 Rh5CG380500 Rh5CG445800 Rh5CG447200 Rh5DG370100 Rh5DG370300 Rh5DG436700 Rh5DG438000 Rh5DG534300 Rh6AG004500 Rh6AG005000 Rh6AG005100 Rh6AG005400 Rh6AG005500 Rh6AG085300 Rh6AG143900 Rh6BG005100 Rh6BG005200 Rh6BG005300 Rh6BG144200 Rh6CG003500 Rh6CG074600 Rh6CG140900 Rh6DG003300 Rh6DG071500 Rh6DG128600 Rh7BG040400 Rh7BG040600 Rh7CG026000 Rh7CG042800 Rh7CG433400 Rh7DG040800 Rh7DG040900
rosa_wichuraiana	Rw0G012560 Rw1G010810 Rw3G007420 Rw5G032480 Rw5G032500 Rw5G038450 Rw5G038560 Rw6G000490 Rw6G012430 Rw7G003390 Rw7G003400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AatII	GACGTC	3 cut(s)	72, 128, 324
AccB7I	CCANNNNNTGG	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	3 cut(s)	237, 410, 447
AclWI	GGATC	2 cut(s)	481, 523
AcuI	CTGAAG	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	427
AcyI	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
AdeI	CACNNNGTG	1 cut(s)	427
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	7 cut(s)	50, 229, 287, 427, 430, 500, 538
AluBI	AGCT	2 cut(s)	6, 183
AluI	AGCT	2 cut(s)	6, 183
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	262, 390
AlwI	GGATC	2 cut(s)	481, 523
AlwNI	CAGNNNCTG	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	231, 313
ApeKI	GCWGC	2 cut(s)	381, 577
Asp700I	GAANNNNTTC	1 cut(s)	587
AspLEI	GCGC	2 cut(s)	404, 410
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	49, 64, 571
AvaI	CYCGRG	1 cut(s)	536
BanII	GRGCYC	1 cut(s)	545
BbrPI	CACGTG	1 cut(s)	427
BbsI	GAAGAC	2 cut(s)	123, 590
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	368, 564
BceAI	ACGGC	6 cut(s)	184, 200, 233, 304, 328, 436
BcoDI	GTCTC	2 cut(s)	262, 390
BfoI	RGCGCY	1 cut(s)	405
BisI	GCNGC	8 cut(s)	172, 175, 223, 382, 445, 505, 548, 578
BlsI	GCNGC	8 cut(s)	173, 176, 224, 383, 446, 506, 549, 579
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	101
BpiI	GAAGAC	2 cut(s)	123, 590
Bpu10I	CCTNAGC	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	485
BsaAI	YACGTR	1 cut(s)	427
BsaBI	GATNNNNATC	1 cut(s)	485
BsaHI	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
BsaJI	CCNNGG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 260, 290, 335, 365
Bsc4I	CCNNNNNNNGG	7 cut(s)	50, 229, 287, 427, 430, 500, 538
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	414
Bse8I	GATNNNNATC	1 cut(s)	485
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	485
BseLI	CCNNNNNNNGG	7 cut(s)	50, 229, 287, 427, 430, 500, 538
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	51, 202
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	2 cut(s)	368, 564
Bsh1236I	CGCG	3 cut(s)	237, 410, 447
BshFI	GGCC	2 cut(s)	233, 315
BshVI	ATCGAT	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	536
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	7 cut(s)	50, 229, 287, 427, 430, 500, 538
BsmAI	GTCTC	2 cut(s)	262, 390
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	233, 315
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	288, 545
Bsp143I	GATC	2 cut(s)	486, 528
BspANI	GGCC	2 cut(s)	233, 315
BspCNI	CTCAG	2 cut(s)	50, 201
BspDI	ATCGAT	1 cut(s)	485
BspFNI	CGCG	3 cut(s)	237, 410, 447
BspLI	GGNNCC	1 cut(s)	101
BspPI	GGATC	2 cut(s)	481, 523
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	486, 528
BssNI	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
Bst4CI	ACNGT	2 cut(s)	76, 495
BstACI	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	6 cut(s)	235, 406, 438, 442, 449, 545
BstDEI	CTNAG	2 cut(s)	37, 188
BstDSI	CCRYGG	1 cut(s)	166
BstEII	GGTNACC	1 cut(s)	559
BstFNI	CGCG	3 cut(s)	237, 410, 447
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	2 cut(s)	404, 410
BstKTI	GATC	2 cut(s)	489, 531
BstMAI	GTCTC	2 cut(s)	262, 390
BstMBI	GATC	2 cut(s)	486, 528
BstMWI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 381, 416, 437
BstPI	GGTNACC	1 cut(s)	559
BstUI	CGCG	3 cut(s)	237, 410, 447
BstV1I	GCAGC	2 cut(s)	368, 564
BstV2I	GAAGAC	2 cut(s)	123, 590
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
Bsu15I	ATCGAT	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	233, 315
BsuTUI	ATCGAT	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	166
Cac8I	GCNNGC	6 cut(s)	235, 406, 438, 442, 449, 545
CaiI	CAGNNNCTG	1 cut(s)	405
CfoI	GCGC	2 cut(s)	404, 410
Cfr13I	GGNCC	1 cut(s)	232
ClaI	ATCGAT	1 cut(s)	485
CseI	GACGC	2 cut(s)	43, 221
Csp6I	GTAC	1 cut(s)	304
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	37, 188
DpnI	GATC	2 cut(s)	488, 530
DpnII	GATC	2 cut(s)	486, 528
DraIII	CACNNNGTG	1 cut(s)	427
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	545
Eco32I	GATATC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	559
EcoO65I	GGTNACC	1 cut(s)	559
EcoRV	GATATC	1 cut(s)	483
EcoT38I	GRGCYC	1 cut(s)	545
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	1 cut(s)	98
FauI	CCCGC	5 cut(s)	95, 145, 242, 253, 386
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	172, 175, 223, 382, 445, 505, 548, 578
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	8 cut(s)	172, 175, 223, 382, 445, 505, 548, 578
GlaI	GCGC	2 cut(s)	403, 409
GluI	GCNGC	8 cut(s)	172, 175, 223, 382, 445, 505, 548, 578
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	233, 315
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	2 cut(s)	43, 221
HhaI	GCGC	2 cut(s)	404, 410
Hin1I	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
Hin6I	GCGC	2 cut(s)	402, 408
HinP1I	GCGC	2 cut(s)	402, 408
HincII	GTYRAC	2 cut(s)	79, 265
HindII	GTYRAC	2 cut(s)	79, 265
HinfI	GANTC	4 cut(s)	197, 350, 521, 534
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	3 cut(s)	49, 64, 571
Hpy166II	GTNNAC	2 cut(s)	79, 265
Hpy188I	TCNGA	3 cut(s)	67, 526, 533
Hpy8I	GTNNAC	2 cut(s)	79, 265
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	76, 495
HpyCH4IV	ACGT	4 cut(s)	69, 125, 321, 426
HpyF10VI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 381, 416, 437
HpyF3I	CTNAG	2 cut(s)	37, 188
HpySE526I	ACGT	4 cut(s)	69, 125, 321, 426
Hsp92I	GRCGYC	5 cut(s)	54, 69, 125, 213, 321
HspAI	GCGC	2 cut(s)	402, 408
Kzo9I	GATC	2 cut(s)	486, 528
LmnI	GCTCC	2 cut(s)	26, 380
LpnPI	CCDG	9 cut(s)	82, 294, 310, 314, 406, 418, 443, 454, 536
Lsp1109I	GCAGC	2 cut(s)	368, 564
MaeII	ACGT	4 cut(s)	69, 125, 321, 426
MaeIII	GTNAC	3 cut(s)	55, 70, 559
MalI	GATC	2 cut(s)	488, 530
MboI	GATC	2 cut(s)	486, 528
MboII	GAAGA	5 cut(s)	100, 123, 154, 490, 595
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	288, 545
MluCI	AATT	3 cut(s)	227, 329, 471
MlyI	GAGTC	4 cut(s)	191, 344, 528, 530
MmeI	TCCRAC	3 cut(s)	90, 514, 556
MroXI	GAANNNNTTC	1 cut(s)	587
MspA1I	CMGCKG	2 cut(s)	381, 550
MspI	CCGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	3 cut(s)	237, 410, 447
MwoI	GCNNNNNNNGC	7 cut(s)	180, 189, 212, 297, 381, 416, 437
NdeII	GATC	2 cut(s)	486, 528
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	3 cut(s)	55, 70, 559
PaeR7I	CTCGAG	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	5 cut(s)	75, 258, 315, 318, 491
PdmI	GAANNNNTTC	1 cut(s)	587
PflFI	GACNNNGTC	3 cut(s)	127, 215, 520
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	8 cut(s)	173, 176, 224, 383, 446, 506, 549, 579
PleI	GAGTC	4 cut(s)	191, 344, 528, 529
PmaCI	CACGTG	1 cut(s)	427
PmlI	CACGTG	1 cut(s)	427
PpsI	GAGTC	4 cut(s)	191, 344, 528, 529
Ppu21I	YACGTR	1 cut(s)	427
PspCI	CACGTG	1 cut(s)	427
PspEI	GGTNACC	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	232
PspXI	VCTCGAGB	1 cut(s)	536
PstNI	CAGNNNCTG	1 cut(s)	405
PsuI	RGATCY	1 cut(s)	528
PsyI	GACNNNGTC	3 cut(s)	127, 215, 520
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	8 cut(s)	172, 175, 223, 382, 445, 505, 548, 578
Sau3AI	GATC	2 cut(s)	486, 528
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	4 cut(s)	191, 344, 528, 530
SduI	GDGCHC	2 cut(s)	288, 545
Sfr274I	CTCGAG	1 cut(s)	536
SlaI	CTCGAG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
Sse9I	AATT	3 cut(s)	227, 329, 471
TaaI	ACNGT	2 cut(s)	76, 495
TaiI	ACGT	4 cut(s)	72, 128, 324, 429
TaqI	TCGA	6 cut(s)	12, 78, 318, 336, 485, 537
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	3 cut(s)	227, 329, 471
TauI	GCSGC	6 cut(s)	174, 177, 225, 447, 507, 550
TseFI	GTSAC	3 cut(s)	55, 70, 559
TseI	GCWGC	2 cut(s)	381, 577
Tsp45I	GTSAC	3 cut(s)	55, 70, 559
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	3 cut(s)	127, 215, 520
Van91I	CCANNNNNTGG	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	587
ZraI	GACGTC	3 cut(s)	70, 126, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.