Rmu_sc0001793.1_g000060

Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001793.1
Physical Location & Seq
Forward (+)
291430 .. 292855
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001793.1_g000060.1.cds

Sequence Viewer

Length: 1426 bp
atggggaaaggaggtgaggatttcggtaagcgagagaaggcggcggggcctgcgacgtcgtccgattgcgatgcgtttccggcgtggagtaaggagattcatgagtgcgagaagcacttccgcgtgacccggcagttagggctgacgtcggcggaggtggcgaagcggcgggaggagtacgggtggaacgagttggagaagcacgaggggcagtcgatttggagtctggtgctcgaccagttcaacgatactctggtgcggatcctgctcgtcgcggcggtcgtctcgtttgtgctggcgtggttggacggggaggaaggcggtgagaaggagatcacggcgtttgtggagccgttggtgatctttttgattctgattgtgaacgcgattgttggggtttggcaggagagcaatgccgagaaggcgctggaggcgcttaaggagattcagtcggagcaggcgactgtgattcggaatgggattaaggttccgaatttgccggcgaaggagcttgttcccggagatattgtggagcttaaggttggggataaggttccggctgatatgcgtgtagtgcagttgattagctcgaccttgagggttgagcagggttcgttgactggagagagtgaggctgtgaataagactaacaagccggttccggaggatgctgatattcaggggaagtggtctatggtgtttgccgggacgactattgtgaatgggaattgcatttgcttggttgcccagaccggaatggccaccgagattgggaaggtgcatatgcaaattcatgtggcttcacagagtgaggaagacactccgttgaagaagaagcttaatgagtttggggagatgctcactatgataattggagtgatttgtgcattggtgtggctcatcaatgtcaagtacttcctcacttgggactatgttgatgggatgccgaggaacttcaagttttcatttgagaagtgcacttattacttcgagattgcagtggcactggctgtggctgctattcctgaaggtttaccggcagtcatcactacctgcttggcacttggtacccgcaaaatggcacagaagaatgccttggttagaaagcttcccagtgttgaaactctgggttgtaccacagtcatttgttctgacaaaacagggaccttgactacgaaccaaatggcagtttccaggcttgtagctttgggtcctagtccaactataatacggaagtttaaggtggatgggactacttacaatccagcagatggcaaaatttatgactggccaagtggacgtatggatactaatcttcaaacgattgcaaaggtagctgctgtctgtaatgatgctggtattacccaatcagaacagaagtatgttgcccatggaatgcctaccgaggcagctcttaaggttagtt

Protein Analysis

475

Amino Acids

51.87

Weight (kDa)

5.44

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 59, 149
Acc36I ACCTGC 1 cut(s) 1061
Acc65I GGTACC 1 cut(s) 1067
AccB1I GGYRCC 1 cut(s) 1067
AccB7I CCANNNNNTGG 1 cut(s) 1271
AccII CGCG 3 cut(s) 123, 275, 386
AccIII TCCGGA 1 cut(s) 661
AclWI GGATC 2 cut(s) 256, 269
AcoI YGGCCR 2 cut(s) 759, 1289
AcsI RAATTY 3 cut(s) 493, 789, 1278
AcuI CTGAAG 1 cut(s) 1047
AcyI GRCGYC 2 cut(s) 56, 146
AdeI CACNNNGTG 1 cut(s) 809
AfaI GTAC 4 cut(s) 179, 914, 1069, 1135
AfiI CCNNNNNNNGG 4 cut(s) 771, 925, 1078, 1271
AflII CTTAAG 3 cut(s) 437, 536, 1415
AgsI TTSAA 5 cut(s) 244, 829, 958, 1121, 1319
AjnI CCWGG 1 cut(s) 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 1079, 1111
AluBI AGCT 8 cut(s) 511, 535, 588, 838, 1108, 1205, 1337, 1412
AluI AGCT 8 cut(s) 511, 535, 588, 838, 1108, 1205, 1337, 1412
Alw21I GWGCWC 2 cut(s) 234, 980
Alw26I GTCTC 1 cut(s) 289
Alw44I GTGCAC 1 cut(s) 976
AlwI GGATC 2 cut(s) 256, 269
Aor13HI TCCGGA 1 cut(s) 661
AoxI GGCC 3 cut(s) 47, 759, 1289
ApaLI GTGCAC 1 cut(s) 976
ApeKI GCWGC 3 cut(s) 1016, 1337, 1409
ApoI RAATTY 3 cut(s) 493, 789, 1278
Asp700I GAANNNNTTC 1 cut(s) 116
Asp718I GGTACC 1 cut(s) 1067
AspLEI GCGC 2 cut(s) 427, 436
AspS9I GGNCC 3 cut(s) 47, 1164, 1211
AsuC2I CCSGG 3 cut(s) 130, 519, 706
AsuHPI GGTGA 3 cut(s) 26, 335, 370
AvaII GGWCC 2 cut(s) 1164, 1211
BaeGI GKGCMC 1 cut(s) 980
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BalI TGGCCA 2 cut(s) 761, 1291
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 1067
BauI CACGAG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 2 cut(s) 234, 980
BbvI GCAGC 3 cut(s) 1003, 1324, 1421
BccI CCATC 3 cut(s) 932, 1241, 1265
BceAI ACGGC 2 cut(s) 337, 354
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 1195
BciVI GTATCC 1 cut(s) 1300
BcnI CCSGG 3 cut(s) 130, 519, 706
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 1215
BfoI RGCGCY 2 cut(s) 428, 437
BfrI CTTAAG 3 cut(s) 437, 536, 1415
BfuAI ACCTGC 1 cut(s) 1061
BfuI GTATCC 1 cut(s) 1300
BglI GCCNNNNNGGC 1 cut(s) 422
BisI GCNGC 6 cut(s) 42, 167, 276, 1017, 1338, 1410
BlsI GCNGC 6 cut(s) 43, 168, 277, 1018, 1339, 1411
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 4 cut(s) 130, 519, 706, 1195
Bme18I GGWCC 2 cut(s) 1164, 1211
BmgT120I GGNCC 3 cut(s) 47, 1164, 1211
BmiI GGNNCC 9 cut(s) 48, 263, 351, 489, 555, 660, 1069, 1165, 1212
BmrFI CCNGG 4 cut(s) 130, 519, 706, 1195
BmrI ACTGGG 1 cut(s) 1107
BmsI GCATC 5 cut(s) 61, 658, 846, 933, 1342
BmuI ACTGGG 1 cut(s) 1107
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 2 cut(s) 449, 642
BpuEI CTTGAG 1 cut(s) 616
BpuMI CCSGG 3 cut(s) 130, 519, 706
BsaBI GATNNNNATC 1 cut(s) 1311
BsaHI GRCGYC 2 cut(s) 56, 146
BsaJI CCNNGG 4 cut(s) 947, 1095, 1390, 1404
BsaWI WCCGGW 2 cut(s) 661, 752
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 434, 464, 513, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 771, 925, 1078, 1271
Bse118I RCCGGY 3 cut(s) 499, 655, 1036
Bse1I ACTGG 5 cut(s) 238, 625, 1011, 1113, 1292
Bse3DI GCAATG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 1311
BseAI TCCGGA 1 cut(s) 661
BseBI CCWGG 1 cut(s) 1195
BseDI CCNNGG 4 cut(s) 947, 1095, 1390, 1404
BseGI GGATG 3 cut(s) 673, 948, 1252
BseJI GATNNNNATC 1 cut(s) 1311
BseLI CCNNNNNNNGG 4 cut(s) 771, 925, 1078, 1271
BseMI GCAATG 1 cut(s) 418
BseNI ACTGG 5 cut(s) 238, 625, 1011, 1113, 1292
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 980
BseXI GCAGC 3 cut(s) 1003, 1324, 1421
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 3 cut(s) 123, 275, 386
Bsh1285I CGRYCG 1 cut(s) 282
BshFI GGCC 3 cut(s) 49, 761, 1291
BshNI GGYRCC 1 cut(s) 1067
BsiEI CGRYCG 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 234, 980
BslFI GGGAC 4 cut(s) 721, 941, 1177, 1264
BslI CCNNNNNNNGG 4 cut(s) 771, 925, 1078, 1271
BsmAI GTCTC 1 cut(s) 289
BsmBI CGTCTC 1 cut(s) 289
BsmFI GGGAC 4 cut(s) 721, 941, 1177, 1264
BsmI GAATGC 2 cut(s) 1096, 1401
BsnI GGCC 3 cut(s) 49, 761, 1291
Bsp1286I GDGCHC 2 cut(s) 234, 980
Bsp13I TCCGGA 1 cut(s) 661
Bsp143I GATC 3 cut(s) 261, 333, 360
Bsp19I CCATGG 1 cut(s) 1390
BspANI GGCC 3 cut(s) 49, 761, 1291
BspEI TCCGGA 1 cut(s) 661
BspFNI CGCG 3 cut(s) 123, 275, 386
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 9 cut(s) 48, 263, 351, 489, 555, 660, 1069, 1165, 1212
BspMI ACCTGC 1 cut(s) 1061
BspPI GGATC 2 cut(s) 256, 269
BspT107I GGYRCC 1 cut(s) 1067
BspTI CTTAAG 3 cut(s) 437, 536, 1415
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 3 cut(s) 499, 655, 1036
BsrI ACTGG 5 cut(s) 238, 625, 1011, 1113, 1292
BssAI RCCGGY 3 cut(s) 499, 655, 1036
BssECI CCNNGG 4 cut(s) 947, 1095, 1390, 1404
BssMI GATC 3 cut(s) 261, 333, 360
BssNI GRCGYC 2 cut(s) 56, 146
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 2 cut(s) 1095, 1390
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 1195
Bst4CI ACNGT 2 cut(s) 466, 1141
BstACI GRCGYC 2 cut(s) 56, 146
BstAFI CTTAAG 3 cut(s) 437, 536, 1415
BstC8I GCNNGC 4 cut(s) 51, 297, 459, 501
BstDSI CCRYGG 1 cut(s) 1390
BstF5I GGATG 3 cut(s) 673, 948, 1252
BstFNI CGCG 3 cut(s) 123, 275, 386
BstH2I RGCGCY 2 cut(s) 428, 437
BstHHI GCGC 2 cut(s) 427, 436
BstKTI GATC 3 cut(s) 264, 336, 363
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 3 cut(s) 261, 333, 360
BstMCI CGRYCG 1 cut(s) 282
BstNI CCWGG 1 cut(s) 1195
BstSCI CCNGG 4 cut(s) 128, 517, 704, 1193
BstSLI GKGCMC 1 cut(s) 980
BstUI CGCG 3 cut(s) 123, 275, 386
BstV1I GCAGC 3 cut(s) 1003, 1324, 1421
BstV2I GAAGAC 1 cut(s) 822
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BsuI GTATCC 1 cut(s) 1300
BsuRI GGCC 3 cut(s) 49, 761, 1291
BtgI CCRYGG 1 cut(s) 1390
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 3 cut(s) 673, 948, 1252
BtsI GCAGTG 1 cut(s) 1005
BtsIMutI CAGTG 3 cut(s) 1004, 1005, 1120
BveI ACCTGC 1 cut(s) 1061
Cac8I GCNNGC 4 cut(s) 51, 297, 459, 501
CciI TCATGA 1 cut(s) 100
CfoI GCGC 2 cut(s) 427, 436
Cfr10I RCCGGY 3 cut(s) 499, 655, 1036
Cfr13I GGNCC 3 cut(s) 47, 1164, 1211
Csp6I GTAC 4 cut(s) 178, 913, 1068, 1134
CspCI CAANNNNNGTGG 2 cut(s) 751, 786
CviAII CATG 3 cut(s) 101, 794, 1391
CviQI GTAC 4 cut(s) 178, 913, 1068, 1134
DpnI GATC 3 cut(s) 263, 335, 362
DpnII GATC 3 cut(s) 261, 333, 360
DraIII CACNNNGTG 1 cut(s) 809
EaeI YGGCCR 2 cut(s) 759, 1289
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 1095, 1390
Eco47I GGWCC 2 cut(s) 1164, 1211
Eco57I CTGAAG 1 cut(s) 1047
EcoO109I RGGNCCY 3 cut(s) 47, 1164, 1211
EcoRII CCWGG 1 cut(s) 1193
EcoT14I CCWWGG 2 cut(s) 1095, 1390
ErhI CCWWGG 2 cut(s) 1095, 1390
Esp3I CGTCTC 1 cut(s) 289
FaeI CATG 3 cut(s) 104, 797, 1394
FalI AAGNNNNNCTT 2 cut(s) 1079, 1111
FaqI GGGAC 4 cut(s) 721, 941, 1177, 1264
FatI CATG 3 cut(s) 100, 793, 1390
FauI CCCGC 3 cut(s) 37, 162, 1079
FauNDI CATATG 1 cut(s) 783
Fnu4HI GCNGC 6 cut(s) 42, 167, 276, 1017, 1338, 1410
FokI GGATG 3 cut(s) 680, 955, 1259
Fsp4HI GCNGC 6 cut(s) 42, 167, 276, 1017, 1338, 1410
FspBI CTAG 1 cut(s) 1215
GlaI GCGC 2 cut(s) 426, 435
GluI GCNGC 6 cut(s) 42, 167, 276, 1017, 1338, 1410
GsuI CTGGAG 2 cut(s) 449, 642
HaeII RGCGCY 2 cut(s) 428, 437
HaeIII GGCC 3 cut(s) 49, 761, 1291
HhaI GCGC 2 cut(s) 427, 436
Hin1I GRCGYC 2 cut(s) 56, 146
Hin1II CATG 3 cut(s) 104, 797, 1394
Hin6I GCGC 2 cut(s) 425, 434
HinP1I GCGC 2 cut(s) 425, 434
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 836, 1106
HinfI GANTC 5 cut(s) 97, 223, 370, 445, 469
HphI GGTGA 3 cut(s) 26, 335, 370
Hpy166II GTNNAC 5 cut(s) 382, 618, 978, 1034, 1298
Hpy188I TCNGA 7 cut(s) 64, 375, 454, 474, 492, 1153, 1372
Hpy188III TCNNGA 4 cut(s) 101, 662, 991, 1025
Hpy8I GTNNAC 5 cut(s) 382, 618, 978, 1034, 1298
Hpy99I CGWCG 4 cut(s) 58, 61, 151, 275
HpyAV CCTTC 7 cut(s) 31, 311, 322, 415, 499, 769, 1022
HpyCH4III ACNGT 2 cut(s) 466, 1141
HpyCH4IV ACGT 3 cut(s) 56, 146, 1300
HpyCH4V TGCA 8 cut(s) 577, 732, 781, 787, 887, 978, 998, 1328
HpySE526I ACGT 3 cut(s) 56, 146, 1300
Hsp92I GRCGYC 2 cut(s) 56, 146
Hsp92II CATG 3 cut(s) 104, 797, 1394
HspAI GCGC 2 cut(s) 425, 434
Kpn2I TCCGGA 1 cut(s) 661
KpnI GGTACC 1 cut(s) 1071
KroI GCCGGC 1 cut(s) 499
KroNI GCCGGC 1 cut(s) 501
Kzo9I GATC 3 cut(s) 261, 333, 360
LmnI GCTCC 4 cut(s) 349, 454, 508, 532
Lsp1109I GCAGC 3 cut(s) 1003, 1324, 1421
LweI GCATC 5 cut(s) 61, 658, 846, 933, 1342
MaeI CTAG 1 cut(s) 1215
MaeII ACGT 3 cut(s) 56, 146, 1300
MaeIII GTNAC 1 cut(s) 124
MalI GATC 3 cut(s) 263, 335, 362
MboI GATC 3 cut(s) 261, 333, 360
MboII GAAGA 5 cut(s) 827, 841, 844, 1099, 1307
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 2 cut(s) 234, 980
MlsI TGGCCA 2 cut(s) 761, 1291
MluCI AATT 5 cut(s) 493, 727, 789, 870, 1278
MluNI TGGCCA 2 cut(s) 761, 1291
MlyI GAGTC 1 cut(s) 232
MmeI TCCRAC 4 cut(s) 174, 285, 432, 1244
Mox20I TGGCCA 2 cut(s) 761, 1291
MroI TCCGGA 1 cut(s) 661
MroNI GCCGGC 1 cut(s) 499
MroXI GAANNNNTTC 1 cut(s) 116
MscI TGGCCA 2 cut(s) 761, 1291
MseI TTAA 6 cut(s) 438, 483, 537, 840, 1239, 1416
MslI CAYNNNNRTG 1 cut(s) 892
Msp20I TGGCCA 2 cut(s) 761, 1291
MspCI CTTAAG 3 cut(s) 437, 536, 1415
MspR9I CCNGG 4 cut(s) 130, 519, 706, 1195
Mva1269I GAATGC 2 cut(s) 1096, 1401
MvaI CCWGG 1 cut(s) 1195
MvnI CGCG 3 cut(s) 123, 275, 386
NaeI GCCGGC 1 cut(s) 501
NciI CCSGG 3 cut(s) 130, 519, 706
NcoI CCATGG 1 cut(s) 1390
NdeI CATATG 1 cut(s) 783
NdeII GATC 3 cut(s) 261, 333, 360
NgoMIV GCCGGC 1 cut(s) 499
NlaIII CATG 3 cut(s) 104, 797, 1394
NlaIV GGNNCC 9 cut(s) 48, 263, 351, 489, 555, 660, 1069, 1165, 1212
NmeAIII GCCGAG 2 cut(s) 442, 972
NmuCI GTSAC 1 cut(s) 124
PagI TCATGA 1 cut(s) 100
PcsI WCGNNNNNNNCGW 3 cut(s) 186, 279, 458
PctI GAATGC 2 cut(s) 1096, 1401
PdiI GCCGGC 1 cut(s) 501
PdmI GAANNNNTTC 1 cut(s) 116
PfeI GAWTC 4 cut(s) 97, 370, 445, 469
PflFI GACNNNGTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 1271
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 6 cut(s) 43, 168, 277, 1018, 1339, 1411
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PpuMI RGGWCCY 2 cut(s) 1164, 1211
Psp5II RGGWCCY 2 cut(s) 1164, 1211
Psp6I CCWGG 1 cut(s) 1193
PspGI CCWGG 1 cut(s) 1193
PspN4I GGNNCC 9 cut(s) 48, 263, 351, 489, 555, 660, 1069, 1165, 1212
PspPI GGNCC 3 cut(s) 47, 1164, 1211
PspPPI RGGWCCY 2 cut(s) 1164, 1211
PsuI RGATCY 1 cut(s) 261
PsyI GACNNNGTC 1 cut(s) 58
RsaI GTAC 4 cut(s) 179, 914, 1069, 1135
RsaNI GTAC 4 cut(s) 178, 913, 1068, 1134
RseI CAYNNNNRTG 1 cut(s) 892
SaqAI TTAA 6 cut(s) 438, 483, 537, 840, 1239, 1416
SatI GCNGC 6 cut(s) 42, 167, 276, 1017, 1338, 1410
Sau3AI GATC 3 cut(s) 261, 333, 360
Sau96I GGNCC 3 cut(s) 47, 1164, 1211
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 4 cut(s) 130, 519, 706, 1195
SduI GDGCHC 2 cut(s) 234, 980
SfaNI GCATC 5 cut(s) 61, 658, 846, 933, 1342
SinI GGWCC 2 cut(s) 1164, 1211
SmiMI CAYNNNNRTG 1 cut(s) 892
SmlI CTYRAG 4 cut(s) 437, 536, 595, 1415
SmoI CTYRAG 4 cut(s) 437, 536, 595, 1415
Sse9I AATT 5 cut(s) 493, 727, 789, 870, 1278
SspMI CTAG 1 cut(s) 1215
StyD4I CCNGG 4 cut(s) 128, 517, 704, 1193
StyI CCWWGG 2 cut(s) 1095, 1390
TaaI ACNGT 2 cut(s) 466, 1141
TaiI ACGT 3 cut(s) 59, 149, 1303
TaqI TCGA 4 cut(s) 215, 234, 590, 990
TasI AATT 5 cut(s) 493, 727, 789, 870, 1278
TatI WGTACW 1 cut(s) 912
TauI GCSGC 3 cut(s) 44, 169, 278
TfiI GAWTC 4 cut(s) 97, 370, 445, 469
Tru1I TTAA 6 cut(s) 438, 483, 537, 840, 1239, 1416
Tru9I TTAA 6 cut(s) 438, 483, 537, 840, 1239, 1416
TscAI CASTG 3 cut(s) 1005, 1011, 1120
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 1016, 1337, 1409
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 89, 782, 954
TspGWI ACGGA 2 cut(s) 813, 1246
TspRI CASTG 3 cut(s) 1005, 1011, 1120
Tth111I GACNNNGTC 1 cut(s) 58
Van91I CCANNNNNTGG 1 cut(s) 1271
Vha464I CTTAAG 3 cut(s) 437, 536, 1415
VneI GTGCAC 1 cut(s) 976
VpaK11BI GGWCC 2 cut(s) 1164, 1211
XapI RAATTY 3 cut(s) 493, 789, 1278
XmnI GAANNNNTTC 1 cut(s) 116
XspI CTAG 1 cut(s) 1215
ZraI GACGTC 2 cut(s) 57, 147
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.