Prupe.6G246400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012391
Physical Location & Seq
Forward (+)
24315848 .. 24316727
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G246400.1

Sequence Viewer

Length: 438 bp
ATGACTTCAGTTTGCATATCAAACTGCGTCAACGACGCACGTGACCCGCGCGTGCCGATGCGAGCCACCTACGTGAACCTCTACAAGTGGCCCGAGTCAGACGCCGAGTTCGTGAGATCGGTGAGCTCCAAAGGGCGGCGATCAGGTGCGCAGCAACATGGGCACCCAAGAGTTGTGGACAGCATATCCTGCAGGCAAATGTACCTGAGGAGCTACACGTTCTCAAGGAAAGAGACGGTGCCTGAGAAAACCCAGAAATGCTTTGGCAGAGTCAAAGAGAAAATGGTTAACAATAAGAAGGGGAAGGCCAAAGGAGGGCGCAAGAGGAGTAACAAGTGTTTGGTTCTCAGGAAAGTGAAGGAACTGTCATCTGCTGCTCTGTTTAGAATTTTCCGGAGGTTCTTGTCTTGCTCTGCTAGTGTAGATGTTGTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.55

Weight (kDa)

10.42

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02640
fragaria_vesca FvH4_6g14750
malus_domestica MD04G1116500.v1.1 MD12G1132300.v1.1
prunus_persica Prupe.4G261600_v2.0.a1 Prupe.4G261600_v2.0.a1 Prupe.6G246400_v2.0.a1
pyrus_communis pycom12g12820
rosa_chinensis RchiOBHm_Chr3g0467961
rosa_laevigata RLG00000024463
rosa_multiflora Rmu_sc0006017.1_g000003 Rmu_sc0034877.1_g000002
rosa_roxburghii Rroxscaffold_6G00413250
rosa_rugosa Rorug03G0090700
rosa_samantha Rh3AG139400 Rh3BG160900 Rh3CG160800 Rh3DG161400
rosa_wichuraiana Rw3G013190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 150
AccB1I GGYRCC 2 cut(s) 162, 238
AccII CGCG 2 cut(s) 49, 51
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 2 cut(s) 47, 136
AcsI RAATTY 1 cut(s) 387
AcvI CACGTG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 135, 315
AflIII ACRYGT 1 cut(s) 216
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 2 cut(s) 126, 213
AluI AGCT 2 cut(s) 126, 213
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 92
Aor13HI TCCGGA 1 cut(s) 393
AoxI GGCC 2 cut(s) 89, 306
ApeKI GCWGC 2 cut(s) 151, 374
ApoI RAATTY 1 cut(s) 387
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 3 cut(s) 51, 151, 321
AspS9I GGNCC 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 92
AxyI CCTNAGG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 2 cut(s) 162, 238
BanII GRGCYC 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 163, 361
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 1 cut(s) 417
BfmI CTRYAG 1 cut(s) 190
BisI GCNGC 3 cut(s) 137, 152, 375
BlsI GCNGC 3 cut(s) 138, 153, 376
BmeT110I CYCGRG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 164, 240
BmsI GCATC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 208
BsaAI YACGTR 2 cut(s) 41, 73
BsaHI GRCGYC 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 315
Bse21I CCTNAGG 1 cut(s) 206
BseAI TCCGGA 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 135, 315
BseMII CTCAG 3 cut(s) 197, 234, 361
BseRI GAGGAG 2 cut(s) 223, 340
BseSI GKGCMC 1 cut(s) 165
BseXI GCAGC 2 cut(s) 163, 361
Bsh1236I CGCG 2 cut(s) 49, 51
BshFI GGCC 2 cut(s) 91, 308
BshNI GGYRCC 2 cut(s) 162, 238
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 135, 315
BsmAI GTCTC 1 cut(s) 227
BsmBI CGTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 91, 308
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 128, 165
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 116, 140
BspACI CCGC 2 cut(s) 47, 136
BspANI GGCC 2 cut(s) 91, 308
BspCNI CTCAG 3 cut(s) 198, 235, 360
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 2 cut(s) 49, 51
BspLI GGNNCC 2 cut(s) 164, 240
BspMAI CTGCAG 1 cut(s) 194
BspT107I GGYRCC 2 cut(s) 162, 238
BssMI GATC 2 cut(s) 116, 140
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 238, 366
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 189
BstBAI YACGTR 2 cut(s) 41, 73
BstC8I GCNNGC 3 cut(s) 53, 63, 194
BstDEI CTNAG 3 cut(s) 206, 243, 347
BstFNI CGCG 2 cut(s) 49, 51
BstHHI GCGC 3 cut(s) 51, 151, 321
BstKTI GATC 2 cut(s) 119, 143
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 116, 140
BstMWI GCNNNNNNNGC 2 cut(s) 160, 189
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 165
BstUI CGCG 2 cut(s) 49, 51
BstV1I GCAGC 2 cut(s) 163, 361
Bsu36I CCTNAGG 1 cut(s) 206
BsuRI GGCC 2 cut(s) 91, 308
Cac8I GCNNGC 3 cut(s) 53, 63, 194
CfoI GCGC 3 cut(s) 51, 151, 321
Cfr13I GGNCC 1 cut(s) 90
CseI GACGC 3 cut(s) 16, 44, 110
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 1 cut(s) 158
CviJI RGCY 5 cut(s) 65, 91, 126, 213, 308
CviKI_1 RGCY 5 cut(s) 65, 91, 126, 213, 308
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 3 cut(s) 206, 243, 347
DpnI GATC 2 cut(s) 118, 142
DpnII GATC 2 cut(s) 116, 140
Ecl136II GAGCTC 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 128
Eco53kI GAGCTC 1 cut(s) 126
Eco72I CACGTG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 206
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 128
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 1 cut(s) 161
FaiI YATR 3 cut(s) 17, 159, 185
FatI CATG 1 cut(s) 157
FauI CCCGC 1 cut(s) 54
Fnu4HI GCNGC 3 cut(s) 137, 152, 375
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 137, 152, 375
FspBI CTAG 1 cut(s) 417
FspI TGCGCA 1 cut(s) 150
GlaI GCGC 3 cut(s) 50, 150, 320
GluI GCNGC 3 cut(s) 137, 152, 375
HaeIII GGCC 2 cut(s) 91, 308
HapII CCGG 1 cut(s) 394
HgaI GACGC 3 cut(s) 16, 44, 110
HhaI GCGC 3 cut(s) 51, 151, 321
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 1 cut(s) 161
Hin6I GCGC 3 cut(s) 49, 149, 319
HinP1I GCGC 3 cut(s) 49, 149, 319
HincII GTYRAC 2 cut(s) 31, 289
HindII GTYRAC 2 cut(s) 31, 289
HinfI GANTC 2 cut(s) 95, 270
HpaI GTTAAC 1 cut(s) 289
HpaII CCGG 1 cut(s) 394
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 4 cut(s) 31, 76, 178, 289
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 3 cut(s) 112, 349, 394
Hpy8I GTNNAC 4 cut(s) 31, 76, 178, 289
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 292, 298, 352
HpyCH4III ACNGT 2 cut(s) 238, 366
HpyCH4IV ACGT 3 cut(s) 40, 72, 218
HpyCH4V TGCA 2 cut(s) 15, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 189
HpyF3I CTNAG 3 cut(s) 206, 243, 347
HpySE526I ACGT 3 cut(s) 40, 72, 218
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 1 cut(s) 161
HspAI GCGC 3 cut(s) 49, 149, 319
Kpn2I TCCGGA 1 cut(s) 393
KspAI GTTAAC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 116, 140
LmnI GCTCC 2 cut(s) 131, 210
LpnPI CCDG 8 cut(s) 129, 178, 202, 218, 255, 266, 334, 407
Lsp1109I GCAGC 2 cut(s) 163, 361
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 417
MaeII ACGT 3 cut(s) 40, 72, 218
MaeIII GTNAC 2 cut(s) 41, 329
MalI GATC 2 cut(s) 118, 142
MboI GATC 2 cut(s) 116, 140
MhlI GDGCHC 2 cut(s) 128, 165
MluCI AATT 2 cut(s) 387, 433
MlyI GAGTC 2 cut(s) 104, 279
MnlI CCTC 5 cut(s) 89, 201, 308, 318, 390
MroI TCCGGA 1 cut(s) 393
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 394
MvnI CGCG 2 cut(s) 49, 51
MwoI GCNNNNNNNGC 2 cut(s) 160, 189
NdeII GATC 2 cut(s) 116, 140
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 164, 240
NmeAIII GCCGAG 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 41
NsbI TGCGCA 1 cut(s) 150
OliI CACNNNNGTG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PkrI GCNGC 3 cut(s) 138, 153, 376
PleI GAGTC 2 cut(s) 103, 278
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
PpsI GAGTC 2 cut(s) 103, 278
Ppu21I YACGTR 2 cut(s) 41, 73
Psp124BI GAGCTC 1 cut(s) 128
PspCI CACGTG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 164, 240
PspPI GGNCC 1 cut(s) 90
PstI CTGCAG 1 cut(s) 194
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 3 cut(s) 137, 152, 375
Sau3AI GATC 2 cut(s) 116, 140
Sau96I GGNCC 1 cut(s) 90
SbfI CCTGCAGG 1 cut(s) 194
SchI GAGTC 2 cut(s) 104, 279
SdaI CCTGCAGG 1 cut(s) 194
SduI GDGCHC 2 cut(s) 128, 165
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 223
SmoI CTYRAG 1 cut(s) 223
Sse8387I CCTGCAGG 1 cut(s) 194
Sse9I AATT 2 cut(s) 387, 433
SsiI CCGC 2 cut(s) 47, 136
SspMI CTAG 1 cut(s) 417
SstI GAGCTC 1 cut(s) 128
TaaI ACNGT 2 cut(s) 238, 366
TaiI ACGT 3 cut(s) 43, 75, 221
TasI AATT 2 cut(s) 387, 433
TauI GCSGC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseFI GTSAC 1 cut(s) 41
TseI GCWGC 2 cut(s) 151, 374
Tsp45I GTSAC 1 cut(s) 41
XapI RAATTY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XspI CTAG 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.