FvH4_6g14750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012391
Physical Location & Seq
Reverse (-)
9094996 .. 9095977
982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14750.t1

Sequence Viewer

Length: 474 bp
ATGACCTCAGTTTGTATATCAAACTGTGTCAGCGACGCCCGCGATCCCCGCGTGCCGATCCGGGCCACCTACGTCAACCTGTACAAGTGGCCTGAGTCCGACGCGGAGTTCGTGCGGTCTGTGAGCTCCAAGGGGCGGCGGTACAATGCGGCGGGGGTGCCGCATTGGCACCACCAACACCCTCGAGTGGTGGACAGCATATCATGCAGGCAAATGTACCTGAGGAGCTACACGTTCACGAGGAAAGAGACCGTGCCGGAGAAGACCCAGAAGTGCTTTGGCAGAGTCAAGGAGAGAATGGTAACTAACAACAACGATGAGAGGAAGAGGAGTAAGAAGAAGAAGGGTAAGAAGAGTAAGTGTTTGGTTCTGAGGAAAGTGAAGGAGTATTCAACTGCTGCTCTGTTTAGAATCTTTCAGAGGCTTCTGTCTTGTTCTGCTAGTGTAGATGTTGTGAATCATGATCAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.28

Weight (kDa)

10.03

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012391)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02640
fragaria_vesca FvH4_6g14750
malus_domestica MD04G1116500.v1.1 MD12G1132300.v1.1
prunus_persica Prupe.4G261600_v2.0.a1 Prupe.4G261600_v2.0.a1 Prupe.6G246400_v2.0.a1
pyrus_communis pycom12g12820
rosa_chinensis RchiOBHm_Chr3g0467961
rosa_laevigata RLG00000024463
rosa_multiflora Rmu_sc0006017.1_g000003 Rmu_sc0034877.1_g000002
rosa_roxburghii Rroxscaffold_6G00413250
rosa_rugosa Rorug03G0090700
rosa_samantha Rh3AG139400 Rh3BG160900 Rh3CG160800 Rh3DG161400
rosa_wichuraiana Rw3G013190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 157, 168
AccII CGCG 3 cut(s) 42, 51, 104
AciI CCGC 9 cut(s) 40, 49, 104, 115, 136, 139, 149, 152, 161
AclWI GGATC 2 cut(s) 38, 52
AcyI GRCGYC 1 cut(s) 36
AfaI GTAC 3 cut(s) 83, 143, 218
AfiI CCNNNNNNNGG 2 cut(s) 135, 187
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 1 cut(s) 393
AluBI AGCT 2 cut(s) 126, 228
AluI AGCT 2 cut(s) 126, 228
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 2 cut(s) 38, 52
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 63, 89
ApeKI GCWGC 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspS9I GGNCC 1 cut(s) 63
AsuC2I CCSGG 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 183
AxyI CCTNAGG 1 cut(s) 221
BanI GGYRCC 2 cut(s) 157, 168
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 269
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 385
BclI TGATCA 1 cut(s) 463
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 1 cut(s) 441
BglI GCCNNNNNGGC 1 cut(s) 166
BisI GCNGC 4 cut(s) 137, 150, 161, 399
BlsI GCNGC 4 cut(s) 138, 151, 162, 400
Bme1390I CCNGG 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 159, 170
BmrFI CCNGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 1 cut(s) 129
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 187
Bse21I CCTNAGG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 135, 187
BseMII CTCAG 4 cut(s) 21, 84, 212, 362
BseRI GAGGAG 2 cut(s) 238, 343
BseXI GCAGC 1 cut(s) 385
Bsh1236I CGCG 3 cut(s) 42, 51, 104
BshFI GGCC 2 cut(s) 65, 91
BshNI GGYRCC 2 cut(s) 157, 168
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 2 cut(s) 61, 257
BslI CCNNNNNNNGG 2 cut(s) 135, 187
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 65, 91
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 128
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 43, 57, 463
BspACI CCGC 9 cut(s) 40, 49, 104, 115, 136, 139, 149, 152, 161
BspANI GGCC 2 cut(s) 65, 91
BspCNI CTCAG 4 cut(s) 20, 85, 213, 363
BspFNI CGCG 3 cut(s) 42, 51, 104
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 159, 170
BspPI GGATC 2 cut(s) 38, 52
BspT107I GGYRCC 2 cut(s) 157, 168
BspTNI GGTCTC 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 43, 57, 463
BssNI GRCGYC 1 cut(s) 36
BssSI CACGAG 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 238
Bst4CI ACNGT 2 cut(s) 26, 253
Bst6I CTCTTC 2 cut(s) 320, 347
BstACI GRCGYC 1 cut(s) 36
BstAPI GCANNNNNTGC 1 cut(s) 204
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 40, 53, 209
BstDEI CTNAG 4 cut(s) 7, 93, 221, 371
BstFNI CGCG 3 cut(s) 42, 51, 104
BstKTI GATC 3 cut(s) 46, 60, 466
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 3 cut(s) 43, 57, 463
BstMWI GCNNNNNNNGC 4 cut(s) 39, 48, 166, 204
BstSCI CCNGG 1 cut(s) 60
BstUI CGCG 3 cut(s) 42, 51, 104
BstV1I GCAGC 1 cut(s) 385
BstV2I GAAGAC 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 221
BsuRI GGCC 2 cut(s) 65, 91
Cac8I GCNNGC 3 cut(s) 40, 53, 209
CciI TCATGA 1 cut(s) 460
Cfr13I GGNCC 1 cut(s) 63
CseI GACGC 2 cut(s) 44, 110
Csp6I GTAC 3 cut(s) 82, 142, 217
CviAII CATG 2 cut(s) 204, 461
CviJI RGCY 5 cut(s) 65, 91, 126, 228, 424
CviKI_1 RGCY 5 cut(s) 65, 91, 126, 228, 424
CviQI GTAC 3 cut(s) 82, 142, 217
DdeI CTNAG 4 cut(s) 7, 93, 221, 371
DpnI GATC 3 cut(s) 45, 59, 465
DpnII GATC 3 cut(s) 43, 57, 463
Eam1104I CTCTTC 2 cut(s) 320, 347
EarI CTCTTC 2 cut(s) 320, 347
Ecl136II GAGCTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 129
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 129
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 207, 464
FaiI YATR 4 cut(s) 17, 200, 205, 462
FatI CATG 2 cut(s) 203, 460
FauI CCCGC 3 cut(s) 47, 56, 145
FbaI TGATCA 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 137, 150, 161, 399
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 137, 150, 161, 399
FspBI CTAG 1 cut(s) 441
GluI GCNGC 4 cut(s) 137, 150, 161, 399
HaeIII GGCC 2 cut(s) 65, 91
HapII CCGG 2 cut(s) 61, 257
HgaI GACGC 2 cut(s) 44, 110
Hin1I GRCGYC 1 cut(s) 36
Hin1II CATG 2 cut(s) 207, 464
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 95, 285, 411, 457
HpaII CCGG 2 cut(s) 61, 257
Hpy166II GTNNAC 3 cut(s) 76, 193, 237
Hpy188I TCNGA 3 cut(s) 100, 372, 420
Hpy188III TCNNGA 3 cut(s) 238, 461, 467
Hpy8I GTNNAC 3 cut(s) 76, 193, 237
Hpy99I CGWCG 2 cut(s) 38, 104
HpyAV CCTTC 2 cut(s) 337, 376
HpyCH4III ACNGT 2 cut(s) 26, 253
HpyCH4IV ACGT 2 cut(s) 72, 233
HpyCH4V TGCA 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 48, 166, 204
HpyF3I CTNAG 4 cut(s) 7, 93, 221, 371
HpySE526I ACGT 2 cut(s) 72, 233
Hsp92I GRCGYC 1 cut(s) 36
Hsp92II CATG 2 cut(s) 207, 464
Ksp22I TGATCA 1 cut(s) 463
Kzo9I GATC 3 cut(s) 43, 57, 463
LmnI GCTCC 2 cut(s) 131, 225
LpnPI CCDG 7 cut(s) 74, 92, 105, 193, 233, 270, 281
Lsp1109I GCAGC 1 cut(s) 385
MaeI CTAG 1 cut(s) 441
MaeII ACGT 2 cut(s) 72, 233
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 45, 59, 465
MboI GATC 3 cut(s) 43, 57, 463
MboII GAAGA 5 cut(s) 274, 337, 349, 352, 364
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 104, 294
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 16, 192, 216, 234, 315, 321, 366, 414
MspI CCGG 2 cut(s) 61, 257
MspR9I CCNGG 1 cut(s) 62
MvnI CGCG 3 cut(s) 42, 51, 104
MwoI GCNNNNNNNGC 4 cut(s) 39, 48, 166, 204
NciI CCSGG 1 cut(s) 62
NdeII GATC 3 cut(s) 43, 57, 463
NlaIII CATG 2 cut(s) 207, 464
NlaIV GGNNCC 2 cut(s) 159, 170
PaeR7I CTCGAG 1 cut(s) 183
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 2 cut(s) 411, 457
PkrI GCNGC 4 cut(s) 138, 151, 162, 400
PleI GAGTC 2 cut(s) 103, 293
PpsI GAGTC 2 cut(s) 103, 293
Psp124BI GAGCTC 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 159, 170
PspPI GGNCC 1 cut(s) 63
PspXI VCTCGAGB 1 cut(s) 183
RsaI GTAC 3 cut(s) 83, 143, 218
RsaNI GTAC 3 cut(s) 82, 142, 217
SacI GAGCTC 1 cut(s) 128
SatI GCNGC 4 cut(s) 137, 150, 161, 399
Sau3AI GATC 3 cut(s) 43, 57, 463
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 2 cut(s) 104, 294
ScrFI CCNGG 1 cut(s) 62
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 8, 71, 75, 81, 128, 222, 230, 236
Sfr274I CTCGAG 1 cut(s) 183
SlaI CTCGAG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
SsiI CCGC 9 cut(s) 40, 49, 104, 115, 136, 139, 149, 152, 161
SspMI CTAG 1 cut(s) 441
SstI GAGCTC 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 60
StyI CCWWGG 1 cut(s) 129
TaaI ACNGT 2 cut(s) 26, 253
TaiI ACGT 2 cut(s) 75, 236
TaqI TCGA 1 cut(s) 184
TatI WGTACW 1 cut(s) 81
TauI GCSGC 3 cut(s) 139, 152, 163
TfiI GAWTC 2 cut(s) 411, 457
TseI GCWGC 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 183
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.