AT5G03070

Importin alpha

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
718136 .. 721559
3424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03070.1

Sequence Viewer

Length: 1560 bp
ATGGCGGATGATGGCTCCGCCTCTAATCGAAGGGACCCAATAAAGTCTTCAGTTGGAAATGTTGCGGGACAAAGAAGACGAAAACAAGCTGTTACAGTGGCGAAGGAAAGAAGGGAATTACTGGTTAGGGCAAAGCGGCTTTGTAGGGTGGGTACTAATGGCGATGTTGAGGATGCTCTTGTTGAGAATGAGATGATGGTTGATGAAGAGCAGCCTATATTGGAGGCTCAAGCCAGTAAATCTGTGGAAGAGCTCAAGTCCGCTGTTCAATACCAGGGAAAAGGTGCAATGCAGAAGAGGGTGACTGCTCTTCGGGAACTCAGGCGTTTATTATCAAAATCTGAGTTCCCTCCTGTTGAAGCTGCGCTCCGTGCTGGTGCAATACCTTTACTTGTGCAGTGTCTTTCATTTGGCTCCCCCGACGAACAGTTACTTGAGTCAGCTTGGTGTCTTACCAACATTGCTGCTGGAAAACCTGAAGAAACAAAAGCTCTATTACCTGCATTGCCGTTACTCATTGCTCACCTTGGAGAAAAGAGCTCCGCACCGGTGGCTGAGCAGTGCGCATGGGCAATTGGTAATGTTGCCGGTGAAGGAGAAGATTTGAGAAATGTTCTTTTGTCTCAAGGGGCTTTGCCACCTCTAGCACGTATGATTTTTCCCGACAAGGGTTCAACAGTGAGAACAGCTGCATGGGCATTGTCAAATCTGATTAAGGGACCTGAGTCAAAGGCAGCAGCACAACTTGTTAAAATTGATGGGATACTGGATGCAATTCTTCGACACTTGAAGAAAACGGATGAGGAAACTGCCACGGAAATTGCATGGATCATTGTTTACCTATCTGCCCTCTCAGATATCGCTACAAGTATGCTCTTGAAGGGAGGCATTCTTCAACTACTTATTGACAGATTAGCAACCTCAAGTAGCCTACAACTTCTCATCCCGGTTCTCCGAAGTTTAGGCAATTTTGTCGCTGTTGATCCCAAAGCAGTATTAACAATTCTTATCCGTGAACAGAACACTGAAGAAAGCATCATTGGTGTGCTTGCAAAGTGCTTAAGAAGCGAGCACCGTGTTTTAAAGAAGGAAGCTGCTTGGGTGCTATCTAATATAGCGGCGGGATCTATTGAACACAAGAGAATGATACATTCTACTGAAGTAATGCCATTGTTGCTACGGATTCTTTCCACATCCCCCTTTGATATAAGGAAAGAAGTTGCCTATGTCTTGGGAAATCTCTGTGTAGAATCTGCAGAAGGAGACAGAAAACCAAGGATAATTCAAGAGCATTTAGTCTCTATTGTCAGTGGCGGTTGCCTCCGGGGTTTCATTGAGCTGGTCAGATCTCCTGATATCGAAGCTGCTAGGCTTGGTCTTCAGTTCATTGAGCTGGTTTTAAGAGGAATGCCAAACGGGGAAGGGCCAAAGCTTGTGGAAGGAGAAGACGGTATCGATGCAATGGAACGGTTTCAGTTTCATGAGAACGAAGAGCTGAGAGTCATGGCGAACAGTCTTGTGGATAAATACTTTGGTGAAGATTATGGAATCGATGAATGA

Protein Analysis

519

Amino Acids

56.68

Weight (kDa)

5.67

Isoelectric Point (pI)

46.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm PF00514 118 - 156 3e-06 Armadillo/beta-catenin-like repeat
Arm PF00514 203 - 237 3.7e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 565
Acc36I ACCTGC 1 cut(s) 508
AciI CCGC 9 cut(s) 5, 18, 65, 136, 261, 543, 1118, 1121, 1314
AclWI GGATC 3 cut(s) 836, 977, 1132
AcuI CTGAAG 5 cut(s) 33, 498, 1047, 1179, 1364
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 668
AflII CTTAAG 1 cut(s) 1060
AgeI ACCGGT 1 cut(s) 547
AgsI TTSAA 8 cut(s) 269, 359, 675, 790, 880, 896, 1133, 1286
AjnI CCWGG 1 cut(s) 273
AjuI GAANNNNNNNTTGG 4 cut(s) 31, 63, 1023, 1055
Alw21I GWGCWC 3 cut(s) 255, 542, 1074
Alw26I GTCTC 3 cut(s) 627, 1257, 1303
AlwI GGATC 3 cut(s) 836, 977, 1132
AoxI GGCC 1 cut(s) 1424
ApeKI GCWGC 8 cut(s) 211, 362, 464, 689, 734, 737, 1094, 1364
AsiGI ACCGGT 1 cut(s) 547
Asp700I GAANNNNTTC 1 cut(s) 1470
AspLEI GCGC 2 cut(s) 367, 566
AspS9I GGNCC 3 cut(s) 34, 719, 1424
AsuC2I CCSGG 2 cut(s) 947, 1325
AsuHPI GGTGA 4 cut(s) 313, 515, 602, 1547
AvaII GGWCC 2 cut(s) 34, 719
BanII GRGCYC 2 cut(s) 255, 542
BbsI GAAGAC 4 cut(s) 39, 82, 1370, 1452
Bbv12I GWGCWC 3 cut(s) 255, 542, 1074
BbvI GCAGC 8 cut(s) 223, 349, 451, 676, 746, 749, 1081, 1351
BccI CCATC 3 cut(s) 5, 190, 752
BceAI ACGGC 1 cut(s) 493
BcgI CGANNNNNNTGC 2 cut(s) 955, 989
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 756
BcnI CCSGG 2 cut(s) 947, 1325
BcoDI GTCTC 3 cut(s) 627, 1257, 1303
BfaI CTAG 2 cut(s) 644, 1368
BfmI CTRYAG 1 cut(s) 1254
BfrI CTTAAG 1 cut(s) 1060
BfuAI ACCTGC 1 cut(s) 508
BfuI GTATCC 1 cut(s) 756
BglII AGATCT 1 cut(s) 1346
BlpI GCTNAGC 1 cut(s) 555
Bme1390I CCNGG 3 cut(s) 275, 947, 1325
Bme18I GGWCC 2 cut(s) 34, 719
BmgT120I GGNCC 3 cut(s) 34, 719, 1424
BmiI GGNNCC 5 cut(s) 16, 35, 36, 415, 720
BmrFI CCNGG 3 cut(s) 275, 947, 1325
BmsI GCATC 4 cut(s) 163, 760, 1044, 1447
BoxI GACNNNNGTC 1 cut(s) 724
BpiI GAAGAC 4 cut(s) 39, 82, 1370, 1452
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 5 cut(s) 213, 239, 455, 609, 907
BpuMI CCSGG 2 cut(s) 947, 1325
Bsa29I ATCGAT 2 cut(s) 1455, 1551
BsaAI YACGTR 1 cut(s) 650
BsaJI CCNNGG 5 cut(s) 274, 526, 813, 1274, 1324
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse118I RCCGGY 2 cut(s) 547, 587
Bse1I ACTGG 3 cut(s) 126, 234, 771
Bse3DI GCAATG 5 cut(s) 294, 459, 503, 516, 1467
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 2 cut(s) 1455, 1551
BseDI CCNNGG 5 cut(s) 274, 526, 813, 1274, 1324
BseGI GGATG 6 cut(s) 13, 178, 775, 805, 942, 1193
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMI GCAATG 5 cut(s) 294, 459, 503, 516, 1467
BseMII CTCAG 6 cut(s) 333, 334, 546, 714, 867, 1487
BseNI ACTGG 3 cut(s) 126, 234, 771
BseXI GCAGC 8 cut(s) 223, 349, 451, 676, 746, 749, 1081, 1351
BsgI GTGCAG 1 cut(s) 416
BshFI GGCC 1 cut(s) 1426
BshTI ACCGGT 1 cut(s) 547
BshVI ATCGAT 2 cut(s) 1455, 1551
BsiHKAI GWGCWC 3 cut(s) 255, 542, 1074
BsiSI CCGG 4 cut(s) 548, 588, 947, 1324
BslFI GGGAC 3 cut(s) 47, 81, 732
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 3 cut(s) 627, 1257, 1303
BsmFI GGGAC 3 cut(s) 47, 81, 732
BsmI GAATGC 2 cut(s) 888, 1413
BsnI GGCC 1 cut(s) 1426
Bsp1286I GDGCHC 3 cut(s) 255, 542, 1074
Bsp143I GATC 4 cut(s) 828, 982, 1124, 1346
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 9 cut(s) 5, 18, 65, 136, 261, 543, 1118, 1121, 1314
BspANI GGCC 1 cut(s) 1426
BspCNI CTCAG 6 cut(s) 333, 334, 547, 715, 866, 1488
BspDI ATCGAT 2 cut(s) 1455, 1551
BspHI TCATGA 1 cut(s) 1480
BspLI GGNNCC 5 cut(s) 16, 35, 36, 415, 720
BspMAI CTGCAG 1 cut(s) 1258
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 3 cut(s) 836, 977, 1132
BspQI GCTCTTC 4 cut(s) 201, 243, 315, 1485
BspTI CTTAAG 1 cut(s) 1060
BsrDI GCAATG 5 cut(s) 294, 459, 503, 516, 1467
BsrFI RCCGGY 2 cut(s) 547, 587
BsrI ACTGG 3 cut(s) 126, 234, 771
BssAI RCCGGY 2 cut(s) 547, 587
BssECI CCNNGG 5 cut(s) 274, 526, 813, 1274, 1324
BssMI GATC 4 cut(s) 828, 982, 1124, 1346
BssT1I CCWWGG 2 cut(s) 526, 1274
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 7 cut(s) 97, 429, 679, 1076, 1451, 1470, 1514
Bst6I CTCTTC 5 cut(s) 201, 243, 290, 315, 1485
BstAFI CTTAAG 1 cut(s) 1060
BstBAI YACGTR 1 cut(s) 650
BstC8I GCNNGC 2 cut(s) 1050, 1070
BstDEI CTNAG 6 cut(s) 320, 342, 555, 723, 853, 1496
BstDSI CCRYGG 1 cut(s) 813
BstF5I GGATG 6 cut(s) 13, 178, 775, 805, 942, 1193
BstHHI GCGC 2 cut(s) 367, 566
BstKTI GATC 4 cut(s) 831, 985, 1127, 1349
BstMAI GTCTC 3 cut(s) 627, 1257, 1303
BstMBI GATC 4 cut(s) 828, 982, 1124, 1346
BstMWI GCNNNNNNNGC 5 cut(s) 371, 551, 695, 1065, 1174
BstNI CCWGG 1 cut(s) 275
BstPAI GACNNNNGTC 1 cut(s) 724
BstSCI CCNGG 3 cut(s) 273, 945, 1323
BstSFI CTRYAG 1 cut(s) 1254
BstV1I GCAGC 8 cut(s) 223, 349, 451, 676, 746, 749, 1081, 1351
BstV2I GAAGAC 4 cut(s) 39, 82, 1370, 1452
BstX2I RGATCY 2 cut(s) 1124, 1346
BstYI RGATCY 2 cut(s) 1124, 1346
Bsu15I ATCGAT 2 cut(s) 1455, 1551
BsuI GTATCC 1 cut(s) 756
BsuRI GGCC 1 cut(s) 1426
BsuTUI ATCGAT 2 cut(s) 1455, 1551
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 6 cut(s) 13, 178, 775, 805, 942, 1193
BtsI GCAGTG 2 cut(s) 404, 566
BtsIMutI CAGTG 6 cut(s) 102, 404, 566, 684, 1023, 1315
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 2 cut(s) 1050, 1070
CciI TCATGA 1 cut(s) 1480
CfoI GCGC 2 cut(s) 367, 566
Cfr10I RCCGGY 2 cut(s) 547, 587
Cfr13I GGNCC 3 cut(s) 34, 719, 1424
ClaI ATCGAT 2 cut(s) 1455, 1551
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 547
CspCI CAANNNNNGTGG 4 cut(s) 802, 837, 1416, 1451
CviAII CATG 5 cut(s) 567, 693, 825, 1481, 1504
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 6 cut(s) 320, 342, 555, 723, 853, 1496
DpnI GATC 4 cut(s) 830, 984, 1126, 1348
DpnII GATC 4 cut(s) 828, 982, 1124, 1346
DraI TTTAAA 1 cut(s) 1083
Eam1104I CTCTTC 5 cut(s) 201, 243, 290, 315, 1485
EarI CTCTTC 5 cut(s) 201, 243, 290, 315, 1485
EciI GGCGGA 2 cut(s) 7, 20
Ecl136II GAGCTC 2 cut(s) 253, 540
Eco130I CCWWGG 2 cut(s) 526, 1274
Eco24I GRGCYC 2 cut(s) 255, 542
Eco32I GATATC 2 cut(s) 859, 1357
Eco47I GGWCC 2 cut(s) 34, 719
Eco53kI GAGCTC 2 cut(s) 253, 540
Eco57I CTGAAG 5 cut(s) 33, 498, 1047, 1179, 1364
EcoICRI GAGCTC 2 cut(s) 253, 540
EcoO109I RGGNCCY 2 cut(s) 34, 719
EcoRII CCWGG 1 cut(s) 273
EcoRV GATATC 2 cut(s) 859, 1357
EcoT14I CCWWGG 2 cut(s) 526, 1274
EcoT38I GRGCYC 2 cut(s) 255, 542
ErhI CCWWGG 2 cut(s) 526, 1274
FaeI CATG 5 cut(s) 570, 696, 828, 1484, 1507
FaqI GGGAC 3 cut(s) 47, 81, 732
FatI CATG 5 cut(s) 566, 692, 824, 1480, 1503
FauI CCCGC 2 cut(s) 58, 1114
FokI GGATG 6 cut(s) 20, 185, 782, 812, 929, 1180
FriOI GRGCYC 2 cut(s) 255, 542
FspAI RTGCGCAY 1 cut(s) 565
FspBI CTAG 2 cut(s) 644, 1368
FspI TGCGCA 1 cut(s) 565
GlaI GCGC 2 cut(s) 366, 565
HaeIII GGCC 1 cut(s) 1426
HapII CCGG 4 cut(s) 548, 588, 947, 1324
HhaI GCGC 2 cut(s) 367, 566
Hin1II CATG 5 cut(s) 570, 696, 828, 1484, 1507
Hin6I GCGC 2 cut(s) 365, 564
HinP1I GCGC 2 cut(s) 365, 564
HindIII AAGCTT 1 cut(s) 1430
HinfI GANTC 6 cut(s) 437, 725, 1183, 1250, 1500, 1548
HpaII CCGG 4 cut(s) 548, 588, 947, 1324
HphI GGTGA 4 cut(s) 313, 515, 602, 1547
Hpy166II GTNNAC 2 cut(s) 838, 1016
Hpy188I TCNGA 5 cut(s) 343, 711, 856, 956, 1346
Hpy188III TCNNGA 6 cut(s) 314, 662, 877, 1286, 1352, 1481
Hpy8I GTNNAC 2 cut(s) 838, 1016
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 9 cut(s) 24, 97, 105, 587, 874, 1081, 1253, 1415, 1433
HpyCH4III ACNGT 7 cut(s) 97, 429, 679, 1076, 1451, 1470, 1514
HpyCH4IV ACGT 1 cut(s) 649
HpyF10VI GCNNNNNNNGC 5 cut(s) 371, 551, 695, 1065, 1174
HpyF3I CTNAG 6 cut(s) 320, 342, 555, 723, 853, 1496
HpySE526I ACGT 1 cut(s) 649
Hsp92II CATG 5 cut(s) 570, 696, 828, 1484, 1507
HspAI GCGC 2 cut(s) 365, 564
KflI GGGWCCC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 828, 982, 1124, 1346
LguI GCTCTTC 4 cut(s) 201, 243, 315, 1485
LmnI GCTCC 4 cut(s) 20, 372, 419, 545
Lsp1109I GCAGC 8 cut(s) 223, 349, 451, 676, 746, 749, 1081, 1351
LweI GCATC 4 cut(s) 163, 760, 1044, 1447
MaeI CTAG 2 cut(s) 644, 1368
MaeII ACGT 1 cut(s) 649
MaeIII GTNAC 4 cut(s) 91, 301, 429, 510
MalI GATC 4 cut(s) 830, 984, 1126, 1348
MboI GATC 4 cut(s) 828, 982, 1124, 1346
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 1124, 1346
MhlI GDGCHC 3 cut(s) 255, 542, 1074
MluCI AATT 8 cut(s) 116, 573, 753, 774, 819, 967, 1002, 1281
MlyI GAGTC 3 cut(s) 446, 734, 1509
MmeI TCCRAC 1 cut(s) 34
MroXI GAANNNNTTC 1 cut(s) 1470
MseI TTAA 6 cut(s) 714, 750, 998, 1061, 1082, 1400
MslI CAYNNNNRTG 1 cut(s) 1043
MspA1I CMGCKG 2 cut(s) 263, 689
MspCI CTTAAG 1 cut(s) 1060
MspI CCGG 4 cut(s) 548, 588, 947, 1324
MspR9I CCNGG 3 cut(s) 275, 947, 1325
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 888, 1413
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 5 cut(s) 371, 551, 695, 1065, 1174
NciI CCSGG 2 cut(s) 947, 1325
NdeII GATC 4 cut(s) 828, 982, 1124, 1346
NlaIII CATG 5 cut(s) 570, 696, 828, 1484, 1507
NlaIV GGNNCC 5 cut(s) 16, 35, 36, 415, 720
NmuCI GTSAC 1 cut(s) 301
NsbI TGCGCA 1 cut(s) 565
PagI TCATGA 1 cut(s) 1480
PciSI GCTCTTC 4 cut(s) 201, 243, 315, 1485
PctI GAATGC 2 cut(s) 888, 1413
PdmI GAANNNNTTC 1 cut(s) 1470
PfeI GAWTC 3 cut(s) 1183, 1250, 1548
PinAI ACCGGT 1 cut(s) 547
PleI GAGTC 3 cut(s) 445, 733, 1508
PpsI GAGTC 3 cut(s) 445, 733, 1508
Ppu21I YACGTR 1 cut(s) 650
PpuMI RGGWCCY 2 cut(s) 34, 719
PshAI GACNNNNGTC 1 cut(s) 724
Psp124BI GAGCTC 2 cut(s) 255, 542
Psp5II RGGWCCY 2 cut(s) 34, 719
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 5 cut(s) 16, 35, 36, 415, 720
PspPI GGNCC 3 cut(s) 34, 719, 1424
PspPPI RGGWCCY 2 cut(s) 34, 719
PstI CTGCAG 1 cut(s) 1258
PsuI RGATCY 2 cut(s) 1124, 1346
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 1043
SacI GAGCTC 2 cut(s) 255, 542
SapI GCTCTTC 4 cut(s) 201, 243, 315, 1485
SaqAI TTAA 6 cut(s) 714, 750, 998, 1061, 1082, 1400
Sau3AI GATC 4 cut(s) 828, 982, 1124, 1346
Sau96I GGNCC 3 cut(s) 34, 719, 1424
SchI GAGTC 3 cut(s) 446, 734, 1509
ScrFI CCNGG 3 cut(s) 275, 947, 1325
SduI GDGCHC 3 cut(s) 255, 542, 1074
SfaNI GCATC 4 cut(s) 163, 760, 1044, 1447
SfcI CTRYAG 1 cut(s) 1254
SgrAI CRCCGGYG 1 cut(s) 547
SinI GGWCC 2 cut(s) 34, 719
SmiMI CAYNNNNRTG 1 cut(s) 1043
SmlI CTYRAG 6 cut(s) 228, 254, 434, 624, 922, 1060
SmoI CTYRAG 6 cut(s) 228, 254, 434, 624, 922, 1060
Sse9I AATT 8 cut(s) 116, 573, 753, 774, 819, 967, 1002, 1281
SsiI CCGC 9 cut(s) 5, 18, 65, 136, 261, 543, 1118, 1121, 1314
SspMI CTAG 2 cut(s) 644, 1368
SstI GAGCTC 2 cut(s) 255, 542
StyD4I CCNGG 3 cut(s) 273, 945, 1323
StyI CCWWGG 2 cut(s) 526, 1274
TaaI ACNGT 7 cut(s) 97, 429, 679, 1076, 1451, 1470, 1514
TaiI ACGT 1 cut(s) 652
TaqI TCGA 5 cut(s) 28, 781, 1359, 1455, 1551
TasI AATT 8 cut(s) 116, 573, 753, 774, 819, 967, 1002, 1281
TauI GCSGC 2 cut(s) 139, 1121
TfiI GAWTC 3 cut(s) 1183, 1250, 1548
Tru1I TTAA 6 cut(s) 714, 750, 998, 1061, 1082, 1400
Tru9I TTAA 6 cut(s) 714, 750, 998, 1061, 1082, 1400
TscAI CASTG 6 cut(s) 102, 404, 566, 684, 1030, 1315
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 8 cut(s) 211, 362, 464, 689, 734, 737, 1094, 1364
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 219, 396, 1321, 1375, 1469
TspGWI ACGGA 5 cut(s) 359, 812, 830, 1001, 1195
TspRI CASTG 6 cut(s) 102, 404, 566, 684, 1030, 1315
Vha464I CTTAAG 1 cut(s) 1060
VpaK11BI GGWCC 2 cut(s) 34, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 1470
XspI CTAG 2 cut(s) 644, 1368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.