Rmu_sc0001639.1_g000008

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001639.1
Physical Location & Seq
Forward (+)
25636 .. 30035
4400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001639.1_g000008.1.cds

Sequence Viewer

Length: 1719 bp
atgcaaggacttttgaaggtggaagtagaactccacatcagccccatcacaccaccacagcgcggcagccctctatcaattttcttcgcattcaaaaccctctccccatttctcttctctgctccaaagactcaacctttagctctctctacaatggccgatgatactacggcttctcacagaagagaccctatcaaatcctcagttgggagtgttgcgggacagcggagacggcagaatgcaattacagtgggaaaagaaagaagagaatcgttggttcgtgcaaagcgcttgtgtagagtggggactaatggtgacagtgttgatcctcttgacagtgaaatgattatcgatgaagagcagccaatcttagaggctcaaacatctgcagcagtggaagagttgaagtctgcagctgcacatcaggggaaaggtgcttggcaaaagagggtgagcgccctgcgtgaactcaggcgcttactgtctagatcagaattccctcctgttgatgccgctcttaaagctggtgcagtgcctttactagtgcagtgcctctcatttggctctccagatgagcagttacttgaggcagcttggtgccttacaaacatagcagcagggaaacctgaggaaacaaaagctttgttgccagctttaccactacttattgcttatcttggagaaaagagctccgcgcctgttgctgagcaatgtgcatgggcaatcggaaacgtcgctggtgaaggagaagagctgagaaatgttttgctttctcagggtgccttaccacctcttgcaagaatgatgcttccagacaagggttcaactgtgaggacagctgcttgggcgctgtcaaacctaatcaagggacccaatccaaaggctgcaaatgagctcattagagttgaaggagtattggatgcaattatacggcacctgagaaaggcagatgatgagttagcaactgaagttgcatgggtggttgtgtatctctcagccctttcaaatattgctaccagtatgctagtgaagagtgatgtccttcaactgcttgtggaaagattagcgacatccaacagtttacagttgcttattccggtgctaaggagtttaggtaatcttatagctggtgattcacagacaacccatgctattattgcccctgggaatgaaatcacaggtaacatcatagaggtcttggtgaaatgtttgaggagtgaacacagggtcctaaaaaaggaagctgcttgggtgctgtctaatatagctgctggttctatagaacacaagcagttgatatactcaagtgagacagtgccattgctgatacgccttctttccacagcaccatttgatattcgaaaagaagtagcatatgtactaggcaacctctgtgtttcccctattacaccaacagaaggtgatggaaagccaagtctgattctggagcacttggtttcacttgttgttagaggatgccttcctggtttcattgatttggttagttctgttgatactgaagctgcaagagtaggactacagttcatggaactggttttgagagggatgccgaatggtgaggggccaaagcttgttgagaaagagaatgggattgaagcgatggaaaggttccagtttcatgaaaatgaagacttgagaattatggcaaatagtctagtagataagtactttggagaggactatgggcttgatgactag

Protein Analysis

572

Amino Acids

61.97

Weight (kDa)

5.69

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 597, 779, 933
AccBSI CCGCTC 1 cut(s) 515
AccII CGCG 2 cut(s) 63, 695
AciI CCGC 5 cut(s) 63, 218, 226, 513, 693
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 2 cut(s) 987, 1539
AfaI GTAC 2 cut(s) 1380, 1688
AfeI AGCGCT 1 cut(s) 290
AfiI CCNNNNNNNGG 7 cut(s) 62, 207, 818, 865, 943, 1237, 1418
AgsI TTSAA 8 cut(s) 16, 94, 406, 825, 908, 1005, 1046, 1616
AhlI ACTAGT 1 cut(s) 541
AjnI CCWGG 2 cut(s) 1162, 1483
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
Alw21I GWGCWC 3 cut(s) 692, 897, 1452
Alw26I GTCTC 3 cut(s) 180, 223, 1304
AlwI GGATC 1 cut(s) 320
Aor51HI AGCGCT 1 cut(s) 290
AoxI GGCC 2 cut(s) 156, 1583
ApoI RAATTY 1 cut(s) 494
AspLEI GCGC 6 cut(s) 63, 291, 458, 477, 697, 850
AspS9I GGNCC 3 cut(s) 869, 1228, 1583
AsuHPI GGTGA 7 cut(s) 326, 463, 752, 1142, 1213, 1433, 1589
AsuII TTCGAA 1 cut(s) 1360
AvaII GGWCC 2 cut(s) 869, 1228
AxyI CCTNAGG 1 cut(s) 627
BanI GGYRCC 3 cut(s) 597, 779, 933
BanII GRGCYC 2 cut(s) 692, 897
BbsI GAAGAC 1 cut(s) 1656
Bbv12I GWGCWC 3 cut(s) 692, 897, 1452
BccI CCATC 3 cut(s) 53, 1418, 1615
BceAI ACGGC 3 cut(s) 186, 248, 947
BciT130I CCWGG 2 cut(s) 1164, 1485
BcoDI GTCTC 3 cut(s) 180, 223, 1304
BcuI ACTAGT 1 cut(s) 541
BfaI CTAG 6 cut(s) 486, 542, 1025, 1382, 1676, 1717
BfmI CTRYAG 4 cut(s) 387, 411, 1278, 1538
BfoI RGCGCY 4 cut(s) 292, 459, 478, 851
BlpI GCTNAGC 1 cut(s) 705
BmcAI AGTACT 1 cut(s) 1688
Bme1390I CCNGG 2 cut(s) 1164, 1485
Bme18I GGWCC 2 cut(s) 869, 1228
BmgT120I GGNCC 3 cut(s) 869, 1228, 1583
BmiI GGNNCC 8 cut(s) 599, 781, 870, 871, 935, 1229, 1584, 1631
BmrFI CCNGG 2 cut(s) 1164, 1485
BmsI GCATC 5 cut(s) 499, 795, 910, 1466, 1557
BpiI GAAGAC 1 cut(s) 1656
BpmI CTGGAG 2 cut(s) 552, 1466
Bpu10I CCTNAGC 1 cut(s) 1103
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 1360
BpuEI CTTGAG 3 cut(s) 605, 1288, 1675
Bsa29I ATCGAT 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 1162, 1163
BsaWI WCCGGW 1 cut(s) 1096
BsaXI ACNNNNNCTCC 2 cut(s) 1099, 1129
Bsc4I CCNNNNNNNGG 7 cut(s) 62, 207, 818, 865, 943, 1237, 1418
Bse1I ACTGG 3 cut(s) 1017, 1557, 1633
Bse21I CCTNAGG 1 cut(s) 627
Bse3DI GCAATG 2 cut(s) 716, 1319
BseBI CCWGG 2 cut(s) 1164, 1485
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 2 cut(s) 1162, 1163
BseGI GGATG 4 cut(s) 925, 1070, 1481, 1572
BseLI CCNNNNNNNGG 7 cut(s) 62, 207, 818, 865, 943, 1237, 1418
BseMI GCAATG 2 cut(s) 716, 1319
BseMII CTCAG 8 cut(s) 216, 484, 618, 696, 746, 788, 929, 1008
BseNI ACTGG 3 cut(s) 1017, 1557, 1633
BseRI GAGGAG 1 cut(s) 1228
BsgI GTGCAG 3 cut(s) 402, 549, 566
Bsh1236I CGCG 2 cut(s) 63, 695
BshFI GGCC 2 cut(s) 158, 1585
BshNI GGYRCC 3 cut(s) 597, 779, 933
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 3 cut(s) 692, 897, 1452
BsiSI CCGG 1 cut(s) 1097
BslFI GGGAC 3 cut(s) 234, 319, 882
BslI CCNNNNNNNGG 7 cut(s) 62, 207, 818, 865, 943, 1237, 1418
BsmAI GTCTC 3 cut(s) 180, 223, 1304
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 3 cut(s) 234, 319, 882
BsmI GAATGC 2 cut(s) 89, 244
BsnI GGCC 2 cut(s) 158, 1585
Bso31I GGTCTC 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 1360
Bsp1286I GDGCHC 3 cut(s) 692, 897, 1452
Bsp143I GATC 2 cut(s) 325, 488
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 5 cut(s) 63, 218, 226, 513, 693
BspANI GGCC 2 cut(s) 158, 1585
BspCNI CTCAG 8 cut(s) 215, 483, 619, 697, 747, 787, 930, 1007
BspDI ATCGAT 1 cut(s) 351
BspFNI CGCG 2 cut(s) 63, 695
BspHI TCATGA 1 cut(s) 1639
BspLI GGNNCC 8 cut(s) 599, 781, 870, 871, 935, 1229, 1584, 1631
BspMAI CTGCAG 2 cut(s) 391, 415
BspPI GGATC 1 cut(s) 320
BspQI GCTCTTC 2 cut(s) 351, 744
BspT104I TTCGAA 1 cut(s) 1360
BspT107I GGYRCC 3 cut(s) 597, 779, 933
BspTNI GGTCTC 1 cut(s) 180
BsrBI CCGCTC 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 716, 1319
BsrI ACTGG 3 cut(s) 1017, 1557, 1633
BssECI CCNNGG 2 cut(s) 1162, 1163
BssMI GATC 2 cut(s) 325, 488
Bst2UI CCWGG 2 cut(s) 1164, 1485
Bst4CI ACNGT 9 cut(s) 250, 320, 338, 483, 829, 1079, 1086, 1315, 1542
Bst6I CTCTTC 7 cut(s) 119, 178, 259, 351, 393, 744, 1025
BstBI TTCGAA 1 cut(s) 1360
BstC8I GCNNGC 1 cut(s) 651
BstENI CCTNNNNNAGG 3 cut(s) 863, 941, 1235
BstF5I GGATG 4 cut(s) 925, 1070, 1481, 1572
BstFNI CGCG 2 cut(s) 63, 695
BstH2I RGCGCY 4 cut(s) 292, 459, 478, 851
BstHHI GCGC 6 cut(s) 63, 291, 458, 477, 697, 850
BstKTI GATC 2 cut(s) 328, 491
BstMAI GTCTC 3 cut(s) 180, 223, 1304
BstMBI GATC 2 cut(s) 325, 488
BstMWI GCNNNNNNNGC 5 cut(s) 232, 521, 701, 845, 1157
BstNI CCWGG 2 cut(s) 1164, 1485
BstSCI CCNGG 2 cut(s) 1162, 1483
BstSFI CTRYAG 4 cut(s) 387, 411, 1278, 1538
BstUI CGCG 2 cut(s) 63, 695
BstV2I GAAGAC 1 cut(s) 1656
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 627
BsuRI GGCC 2 cut(s) 158, 1585
BsuTUI ATCGAT 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 1634
BtsCI GGATG 4 cut(s) 925, 1070, 1481, 1572
BtsI GCAGTG 3 cut(s) 399, 537, 554
BtsIMutI CAGTG 7 cut(s) 255, 325, 343, 399, 537, 554, 1320
Cac8I GCNNGC 1 cut(s) 651
CciI TCATGA 1 cut(s) 1639
CfoI GCGC 6 cut(s) 63, 291, 458, 477, 697, 850
Cfr13I GGNCC 3 cut(s) 869, 1228, 1583
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 2 cut(s) 1379, 1687
CspCI CAANNNNNGTGG 2 cut(s) 231, 266
CviAII CATG 5 cut(s) 717, 975, 1148, 1546, 1640
CviQI GTAC 2 cut(s) 1379, 1687
DpnI GATC 2 cut(s) 327, 490
DpnII GATC 2 cut(s) 325, 488
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 7 cut(s) 119, 178, 259, 351, 393, 744, 1025
EarI CTCTTC 7 cut(s) 119, 178, 259, 351, 393, 744, 1025
Ecl136II GAGCTC 2 cut(s) 690, 895
Eco24I GRGCYC 2 cut(s) 692, 897
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 869, 1228
Eco47III AGCGCT 1 cut(s) 290
Eco53kI GAGCTC 2 cut(s) 690, 895
Eco57I CTGAAG 2 cut(s) 987, 1539
Eco81I CCTNAGG 1 cut(s) 627
EcoICRI GAGCTC 2 cut(s) 690, 895
EcoNI CCTNNNNNAGG 3 cut(s) 863, 941, 1235
EcoO109I RGGNCCY 2 cut(s) 869, 1228
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 1162, 1483
EcoT38I GRGCYC 2 cut(s) 692, 897
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 5 cut(s) 720, 978, 1151, 1549, 1643
FaqI GGGAC 3 cut(s) 234, 319, 882
FatI CATG 5 cut(s) 716, 974, 1147, 1545, 1639
FauI CCCGC 1 cut(s) 211
FauNDI CATATG 1 cut(s) 1375
FokI GGATG 4 cut(s) 932, 1057, 1488, 1579
FriOI GRGCYC 2 cut(s) 692, 897
FspBI CTAG 6 cut(s) 486, 542, 1025, 1382, 1676, 1717
GlaI GCGC 6 cut(s) 62, 290, 457, 476, 696, 849
GsuI CTGGAG 2 cut(s) 552, 1466
HaeII RGCGCY 4 cut(s) 292, 459, 478, 851
HaeIII GGCC 2 cut(s) 158, 1585
HapII CCGG 1 cut(s) 1097
HhaI GCGC 6 cut(s) 63, 291, 458, 477, 697, 850
Hin1II CATG 5 cut(s) 720, 978, 1151, 1549, 1643
Hin6I GCGC 6 cut(s) 61, 289, 456, 475, 695, 848
HinP1I GCGC 6 cut(s) 61, 289, 456, 475, 695, 848
HindIII AAGCTT 2 cut(s) 639, 1589
HinfI GANTC 4 cut(s) 130, 269, 1133, 1441
HpaII CCGG 1 cut(s) 1097
HphI GGTGA 7 cut(s) 326, 463, 752, 1142, 1213, 1433, 1589
Hpy166II GTNNAC 3 cut(s) 467, 1082, 1220
Hpy188I TCNGA 3 cut(s) 493, 728, 1440
Hpy188III TCNNGA 6 cut(s) 332, 486, 569, 812, 1445, 1640
Hpy8I GTNNAC 3 cut(s) 467, 1082, 1220
Hpy99I CGWCG 1 cut(s) 737
HpyAV CCTTC 7 cut(s) 10, 737, 902, 1052, 1343, 1412, 1490
HpyCH4III ACNGT 9 cut(s) 250, 320, 338, 483, 829, 1079, 1086, 1315, 1542
HpyCH4IV ACGT 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 5 cut(s) 232, 521, 701, 845, 1157
HpySE526I ACGT 1 cut(s) 732
Hsp92II CATG 5 cut(s) 720, 978, 1151, 1549, 1643
HspAI GCGC 6 cut(s) 61, 289, 456, 475, 695, 848
KflI GGGWCCC 1 cut(s) 869
Kzo9I GATC 2 cut(s) 325, 488
LguI GCTCTTC 2 cut(s) 351, 744
LmnI GCTCC 3 cut(s) 127, 695, 1447
LweI GCATC 5 cut(s) 499, 795, 910, 1466, 1557
MaeI CTAG 6 cut(s) 486, 542, 1025, 1382, 1676, 1717
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 3 cut(s) 314, 579, 1181
MalI GATC 2 cut(s) 327, 490
MbiI CCGCTC 1 cut(s) 515
MboI GATC 2 cut(s) 325, 488
MboII GAAGA 9 cut(s) 76, 106, 195, 276, 368, 410, 761, 1042, 1661
MhlI GDGCHC 3 cut(s) 692, 897, 1452
MluCI AATT 5 cut(s) 78, 243, 494, 924, 1659
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 1098
MseI TTAA 1 cut(s) 519
MslI CAYNNNNRTG 1 cut(s) 1644
MspA1I CMGCKG 3 cut(s) 226, 416, 839
MspI CCGG 1 cut(s) 1097
MspR9I CCNGG 2 cut(s) 1164, 1485
Mva1269I GAATGC 2 cut(s) 89, 244
MvaI CCWGG 2 cut(s) 1164, 1485
MvnI CGCG 2 cut(s) 63, 695
MwoI GCNNNNNNNGC 5 cut(s) 232, 521, 701, 845, 1157
NdeI CATATG 1 cut(s) 1375
NdeII GATC 2 cut(s) 325, 488
NlaIII CATG 5 cut(s) 720, 978, 1151, 1549, 1643
NlaIV GGNNCC 8 cut(s) 599, 781, 870, 871, 935, 1229, 1584, 1631
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 1360
PagI TCATGA 1 cut(s) 1639
PasI CCCWGGG 1 cut(s) 1163
PciSI GCTCTTC 2 cut(s) 351, 744
PctI GAATGC 2 cut(s) 89, 244
PfeI GAWTC 3 cut(s) 269, 1133, 1441
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PpuMI RGGWCCY 2 cut(s) 869, 1228
Psp124BI GAGCTC 2 cut(s) 692, 897
Psp5II RGGWCCY 2 cut(s) 869, 1228
Psp6I CCWGG 2 cut(s) 1162, 1483
PspGI CCWGG 2 cut(s) 1162, 1483
PspN4I GGNNCC 8 cut(s) 599, 781, 870, 871, 935, 1229, 1584, 1631
PspPI GGNCC 3 cut(s) 869, 1228, 1583
PspPPI RGGWCCY 2 cut(s) 869, 1228
PstI CTGCAG 2 cut(s) 391, 415
PvuII CAGCTG 2 cut(s) 416, 839
RsaI GTAC 2 cut(s) 1380, 1688
RsaNI GTAC 2 cut(s) 1379, 1687
RseI CAYNNNNRTG 1 cut(s) 1644
SacI GAGCTC 2 cut(s) 692, 897
SapI GCTCTTC 2 cut(s) 351, 744
SaqAI TTAA 1 cut(s) 519
Sau3AI GATC 2 cut(s) 325, 488
Sau96I GGNCC 3 cut(s) 869, 1228, 1583
ScaI AGTACT 1 cut(s) 1688
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 1164, 1485
SduI GDGCHC 3 cut(s) 692, 897, 1452
SfaNI GCATC 5 cut(s) 499, 795, 910, 1466, 1557
SfcI CTRYAG 4 cut(s) 387, 411, 1278, 1538
SfuI TTCGAA 1 cut(s) 1360
SinI GGWCC 2 cut(s) 869, 1228
SmiMI CAYNNNNRTG 1 cut(s) 1644
SmlI CTYRAG 3 cut(s) 584, 1303, 1654
SmoI CTYRAG 3 cut(s) 584, 1303, 1654
SpeI ACTAGT 1 cut(s) 541
Sse9I AATT 5 cut(s) 78, 243, 494, 924, 1659
SsiI CCGC 5 cut(s) 63, 218, 226, 513, 693
SspI AATATT 1 cut(s) 1009
SspMI CTAG 6 cut(s) 486, 542, 1025, 1382, 1676, 1717
SstI GAGCTC 2 cut(s) 692, 897
StyD4I CCNGG 2 cut(s) 1162, 1483
TaaI ACNGT 9 cut(s) 250, 320, 338, 483, 829, 1079, 1086, 1315, 1542
TaiI ACGT 1 cut(s) 735
TaqI TCGA 2 cut(s) 351, 1360
TasI AATT 5 cut(s) 78, 243, 494, 924, 1659
TatI WGTACW 2 cut(s) 1378, 1686
TauI GCSGC 2 cut(s) 66, 515
TfiI GAWTC 3 cut(s) 269, 1133, 1441
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 7 cut(s) 255, 325, 343, 399, 537, 554, 1320
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 7 cut(s) 369, 1185, 1480, 1534, 1628, 1656, 1662
TspRI CASTG 7 cut(s) 255, 325, 343, 399, 537, 554, 1320
VpaK11BI GGWCC 2 cut(s) 869, 1228
XagI CCTNNNNNAGG 3 cut(s) 863, 941, 1235
XapI RAATTY 1 cut(s) 494
XbaI TCTAGA 1 cut(s) 485
XspI CTAG 6 cut(s) 486, 542, 1025, 1382, 1676, 1717
ZrmI AGTACT 1 cut(s) 1688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.