Prupe.6G240100_v2.0.a1

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
23912551 .. 23917826
5276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G240100.3

Sequence Viewer

Length: 1569 bp
ATGGCTGATGATAATATGGCTCCTCCTCACAGAAGGGAACCTGTCAAGTCTTCAGTTGTGAATCTTGCGGGACAGCGAAGGCGGCAGCAAGCAATTACAATAGGAAAGGAAAGAAGAGAATCTCTTGTGCGTGCGAAGCGCTTATGCAGAGTGGGGACTAGTGGTGATCCTGATGTTCCCTCCGACAGTGAAATGATGATTGATGAAGATCAATCGATCTTGGAGGCTCAAACTTCTTCAGCAGTGGAAGAGTTGAAGTCTGCAGTTGCATATCAGGGGAAAGGTGCATTGCAAAAGAAGGTGAGTGCCCTTCGTGAGCTCAGACGCTTACTGTCAAGATCAGAATTCCCTCCTGTTGAAGCTGCTCTTAAAGCTGGAGCAATACCTTTACTAGTGCAATGTCTTTCATTTGGCTCTCCAGATGAACAGTTGCTTGAGGCAGCTTGGTGCCTTACAAACATAGCGGCAGGGAAACCTGAGGAAACGAAAGCTTTGTTGCCTGCTTTGCCGTTGATTGTTGCTCATCTTGGAGAAAAGAGTTCATTGCCGGTTGCTGAGCAGTGTGCATGGGCGTTGGGAAACGTTGCTGGTGAAGGAGAAGAGCTGAGAAATATTTTGCTATCTCAAGGTGCCTTACCACCTCTTGCCCGAATGATGCTTCCAGACAAGGGTTCAACCGTGAGAACAGCTGCTTGGGCACTCTCAAACCTAATCAAGGGACCCAATCCAAAGGCTGCAACGGAGCTCATTAGAGTTGATGGGGTATTGGATGCAATTATTCGGCATTTGAGAAAAGCAGATGATGAGTTAGCAACTGAAGTAGCGTGGGTGGTTGTGTATCTATCAGCCCTTTCAAATCTTGCTACCAGTATGCTAGTAAAGAGTGATGTCCTTCAACTGCTTGTGGAAAGATTGGCAACATCCAATAGTTTGCAGTTGCTTATTCCGGTGCTAAGAAGTTTGGGCAATCTTATAGCTGGTGATTCACAGACAACCCATGCTGTTATTGTTCCTGGGCATGAAGTCACAGGAAACATCATAGAAGTCCTGGTGAAATGTTTGAACAGTGAGCACCGGGTCCTGAAGAAGGAAGCAGCTTGGGTGCTATCTAATATTGCGGCTGGTTCTATAGAACACAAGCGGTTGATATATTCAAGTGAGGCGGTGCCATTGCTATTACGCCTTCTTTCCACAGCACCATTTGATATAAGAAAGGAAGTAGCATATGTGCTAGGAAACCTCTGTGTTTCTCCTATTTCACCTACAGAAGGTGATGGAAAACCAAACCTGATTCTGGAGCACCTGGTTTCACTTGTTGGTAGAGGATGCCTTCCTGGTTTCATTGATTTGGTTAACTCTGCTGATACTGAAGCTGCCAGACTAGGACTGCAATTCACCGAACTGGTTTTGAGAGGGATGCCACATGGTGAGGGCCCAAAGCTTGTTGAGAAAGAGAATGGGATTGAAGCAATGGAAAGGTTTCAGTTCCACGAAAACGAAGACTTGAGAAATATGGCAAATAGTCTGGTGGATAAGTACTTTGGGGAGGACTATGGGCTTGATGAATAG

Protein Analysis

523

Amino Acids

56.58

Weight (kDa)

5.58

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 447, 629, 1165
AciI CCGC 6 cut(s) 68, 82, 464, 1118, 1141, 1163
AclI AACGTT 1 cut(s) 582
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 5 cut(s) 36, 222, 837, 1103, 1389
AdeI CACNNNGTG 1 cut(s) 1427
AfaI GTAC 1 cut(s) 1538
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 5 cut(s) 668, 715, 1087, 1268, 1294
AgsI TTSAA 8 cut(s) 256, 359, 675, 855, 896, 1063, 1155, 1466
AhlI ACTAGT 2 cut(s) 158, 391
AjnI CCWGG 4 cut(s) 1012, 1047, 1302, 1333
AjuI GAANNNNNNNTTGG 2 cut(s) 676, 708
Alw21I GWGCWC 4 cut(s) 321, 747, 1074, 1302
AlwI GGATC 1 cut(s) 161
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 1 cut(s) 1432
ApaI GGGCCC 1 cut(s) 1436
ApeKI GCWGC 7 cut(s) 85, 362, 440, 689, 734, 1094, 1373
ApoI RAATTY 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 1479
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 4 cut(s) 719, 1078, 1432, 1433
AsuC2I CCSGG 1 cut(s) 1076
AsuHPI GGTGA 9 cut(s) 176, 313, 602, 992, 1063, 1251, 1283, 1387, 1439
AvaII GGWCC 2 cut(s) 719, 1078
AxyI CCTNAGG 1 cut(s) 477
BaeGI GKGCMC 3 cut(s) 310, 700, 1436
BanI GGYRCC 3 cut(s) 447, 629, 1165
BanII GRGCYC 3 cut(s) 321, 747, 1436
BbsI GAAGAC 2 cut(s) 42, 1506
Bbv12I GWGCWC 4 cut(s) 321, 747, 1074, 1302
BbvI GCAGC 7 cut(s) 97, 349, 452, 676, 721, 1106, 1360
BccI CCATC 2 cut(s) 752, 1268
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 4 cut(s) 1014, 1049, 1304, 1335
BcnI CCSGG 1 cut(s) 1076
BcuI ACTAGT 2 cut(s) 158, 391
BfaI CTAG 5 cut(s) 159, 392, 875, 1232, 1382
BfmI CTRYAG 3 cut(s) 261, 1128, 1263
BfoI RGCGCY 1 cut(s) 142
BlpI GCTNAGC 1 cut(s) 555
BmcAI AGTACT 1 cut(s) 1538
Bme1390I CCNGG 5 cut(s) 1014, 1049, 1076, 1304, 1335
Bme18I GGWCC 2 cut(s) 719, 1078
BmgT120I GGNCC 4 cut(s) 719, 1078, 1432, 1433
BmiI GGNNCC 9 cut(s) 21, 39, 449, 631, 720, 721, 1079, 1167, 1434
BmrFI CCNGG 5 cut(s) 1014, 1049, 1076, 1304, 1335
BmsI GCATC 4 cut(s) 645, 760, 1316, 1407
BpiI GAAGAC 2 cut(s) 42, 1506
BpmI CTGGAG 3 cut(s) 396, 402, 1316
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 3 cut(s) 455, 609, 1525
BpuMI CCSGG 1 cut(s) 1076
Bsa29I ATCGAT 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 1013
BsaWI WCCGGW 1 cut(s) 946
Bsc4I CCNNNNNNNGG 5 cut(s) 668, 715, 1087, 1268, 1294
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 2 cut(s) 867, 1407
Bse21I CCTNAGG 1 cut(s) 477
Bse3DI GCAATG 5 cut(s) 287, 404, 542, 1169, 1476
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 4 cut(s) 1014, 1049, 1304, 1335
BseCI ATCGAT 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 1013
BseGI GGATG 4 cut(s) 775, 920, 1331, 1422
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 5 cut(s) 668, 715, 1087, 1268, 1294
BseMI GCAATG 5 cut(s) 287, 404, 542, 1169, 1476
BseMII CTCAG 4 cut(s) 334, 468, 546, 596
BseNI ACTGG 2 cut(s) 867, 1407
BseRI GAGGAG 2 cut(s) 12, 15
BseSI GKGCMC 3 cut(s) 310, 700, 1436
BseXI GCAGC 7 cut(s) 97, 349, 452, 676, 721, 1106, 1360
BshFI GGCC 1 cut(s) 1434
BshNI GGYRCC 3 cut(s) 447, 629, 1165
BshVI ATCGAT 1 cut(s) 215
BsiHKAI GWGCWC 4 cut(s) 321, 747, 1074, 1302
BsiSI CCGG 3 cut(s) 548, 947, 1075
BslFI GGGAC 3 cut(s) 84, 169, 732
BslI CCNNNNNNNGG 5 cut(s) 668, 715, 1087, 1268, 1294
BsmFI GGGAC 3 cut(s) 84, 169, 732
BsnI GGCC 1 cut(s) 1434
Bsp120I GGGCCC 1 cut(s) 1432
Bsp1286I GDGCHC 7 cut(s) 310, 321, 700, 747, 1074, 1302, 1436
Bsp143I GATC 4 cut(s) 166, 208, 216, 338
Bsp1720I GCTNAGC 1 cut(s) 555
BspACI CCGC 6 cut(s) 68, 82, 464, 1118, 1141, 1163
BspANI GGCC 1 cut(s) 1434
BspCNI CTCAG 4 cut(s) 333, 469, 547, 597
BspDI ATCGAT 1 cut(s) 215
BspLI GGNNCC 9 cut(s) 21, 39, 449, 631, 720, 721, 1079, 1167, 1434
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 161
BspQI GCTCTTC 1 cut(s) 594
BspT107I GGYRCC 3 cut(s) 447, 629, 1165
BsrDI GCAATG 5 cut(s) 287, 404, 542, 1169, 1476
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 2 cut(s) 867, 1407
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 1013
BssMI GATC 4 cut(s) 166, 208, 216, 338
Bst2UI CCWGG 4 cut(s) 1014, 1049, 1304, 1335
Bst4CI ACNGT 5 cut(s) 188, 333, 429, 679, 1067
Bst6I CTCTTC 3 cut(s) 109, 243, 594
BstC8I GCNNGC 3 cut(s) 90, 132, 501
BstDEI CTNAG 5 cut(s) 320, 477, 555, 605, 953
BstENI CCTNNNNNAGG 3 cut(s) 713, 1085, 1266
BstF5I GGATG 4 cut(s) 775, 920, 1331, 1422
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 4 cut(s) 169, 211, 219, 341
BstMBI GATC 4 cut(s) 166, 208, 216, 338
BstMWI GCNNNNNNNGC 5 cut(s) 82, 136, 371, 505, 695
BstNI CCWGG 4 cut(s) 1014, 1049, 1304, 1335
BstSCI CCNGG 5 cut(s) 1012, 1047, 1074, 1302, 1333
BstSFI CTRYAG 3 cut(s) 261, 1128, 1263
BstSLI GKGCMC 3 cut(s) 310, 700, 1436
BstV1I GCAGC 7 cut(s) 97, 349, 452, 676, 721, 1106, 1360
BstV2I GAAGAC 2 cut(s) 42, 1506
Bsu15I ATCGAT 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 1 cut(s) 1434
BsuTUI ATCGAT 1 cut(s) 215
BtsCI GGATG 4 cut(s) 775, 920, 1331, 1422
BtsI GCAGTG 2 cut(s) 249, 566
BtsIMutI CAGTG 4 cut(s) 193, 249, 566, 1072
Cac8I GCNNGC 3 cut(s) 90, 132, 501
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 719, 1078, 1432, 1433
ClaI ATCGAT 1 cut(s) 215
CseI GACGC 1 cut(s) 333
CsiI ACCWGGT 1 cut(s) 1302
Csp6I GTAC 1 cut(s) 1537
CviAII CATG 4 cut(s) 567, 998, 1019, 1424
CviQI GTAC 1 cut(s) 1537
DdeI CTNAG 5 cut(s) 320, 477, 555, 605, 953
DpnI GATC 4 cut(s) 168, 210, 218, 340
DpnII GATC 4 cut(s) 166, 208, 216, 338
DraIII CACNNNGTG 1 cut(s) 1427
Eam1104I CTCTTC 3 cut(s) 109, 243, 594
EarI CTCTTC 3 cut(s) 109, 243, 594
Ecl136II GAGCTC 2 cut(s) 319, 745
Eco24I GRGCYC 3 cut(s) 321, 747, 1436
Eco47I GGWCC 2 cut(s) 719, 1078
Eco47III AGCGCT 1 cut(s) 140
Eco53kI GAGCTC 2 cut(s) 319, 745
Eco57I CTGAAG 5 cut(s) 36, 222, 837, 1103, 1389
Eco81I CCTNAGG 1 cut(s) 477
EcoICRI GAGCTC 2 cut(s) 319, 745
EcoNI CCTNNNNNAGG 3 cut(s) 713, 1085, 1266
EcoO109I RGGNCCY 3 cut(s) 719, 1078, 1432
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 1012, 1047, 1302, 1333
EcoT38I GRGCYC 3 cut(s) 321, 747, 1436
FaeI CATG 4 cut(s) 570, 1001, 1022, 1427
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 3 cut(s) 84, 169, 732
FatI CATG 4 cut(s) 566, 997, 1018, 1423
FauI CCCGC 1 cut(s) 61
FauNDI CATATG 1 cut(s) 1225
FokI GGATG 4 cut(s) 782, 907, 1338, 1429
FriOI GRGCYC 3 cut(s) 321, 747, 1436
FspBI CTAG 5 cut(s) 159, 392, 875, 1232, 1382
GlaI GCGC 1 cut(s) 140
GsuI CTGGAG 3 cut(s) 396, 402, 1316
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 1 cut(s) 1434
HapII CCGG 3 cut(s) 548, 947, 1075
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 141
Hin1II CATG 4 cut(s) 570, 1001, 1022, 1427
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 1354
HindII GTYRAC 1 cut(s) 1354
HindIII AAGCTT 2 cut(s) 489, 1439
HinfI GANTC 4 cut(s) 61, 119, 983, 1291
HpaI GTTAAC 1 cut(s) 1354
HpaII CCGG 3 cut(s) 548, 947, 1075
HphI GGTGA 9 cut(s) 176, 313, 602, 992, 1063, 1251, 1283, 1387, 1439
Hpy166II GTNNAC 1 cut(s) 1354
Hpy188I TCNGA 3 cut(s) 184, 323, 343
Hpy188III TCNNGA 7 cut(s) 170, 314, 336, 419, 662, 1081, 1295
Hpy8I GTNNAC 1 cut(s) 1354
HpyCH4III ACNGT 5 cut(s) 188, 333, 429, 679, 1067
HpyCH4IV ACGT 1 cut(s) 582
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 136, 371, 505, 695
HpyF3I CTNAG 5 cut(s) 320, 477, 555, 605, 953
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 4 cut(s) 570, 1001, 1022, 1427
HspAI GCGC 1 cut(s) 139
KflI GGGWCCC 1 cut(s) 719
KspAI GTTAAC 1 cut(s) 1354
Kzo9I GATC 4 cut(s) 166, 208, 216, 338
LguI GCTCTTC 1 cut(s) 594
LmnI GCTCC 4 cut(s) 25, 377, 742, 1297
Lsp1109I GCAGC 7 cut(s) 97, 349, 452, 676, 721, 1106, 1360
LweI GCATC 4 cut(s) 645, 760, 1316, 1407
MabI ACCWGGT 1 cut(s) 1302
MaeI CTAG 5 cut(s) 159, 392, 875, 1232, 1382
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 1 cut(s) 1024
MalI GATC 4 cut(s) 168, 210, 218, 340
MboI GATC 4 cut(s) 166, 208, 216, 338
MboII GAAGA 8 cut(s) 42, 126, 218, 228, 260, 611, 1096, 1511
MhlI GDGCHC 7 cut(s) 310, 321, 700, 747, 1074, 1302, 1436
MluCI AATT 4 cut(s) 93, 344, 774, 1391
MmeI TCCRAC 1 cut(s) 207
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 2 cut(s) 369, 1353
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 3 cut(s) 548, 947, 1075
MspR9I CCNGG 5 cut(s) 1014, 1049, 1076, 1304, 1335
MvaI CCWGG 4 cut(s) 1014, 1049, 1304, 1335
MwoI GCNNNNNNNGC 5 cut(s) 82, 136, 371, 505, 695
NciI CCSGG 1 cut(s) 1076
NdeI CATATG 1 cut(s) 1225
NdeII GATC 4 cut(s) 166, 208, 216, 338
NlaIII CATG 4 cut(s) 570, 1001, 1022, 1427
NlaIV GGNNCC 9 cut(s) 21, 39, 449, 631, 720, 721, 1079, 1167, 1434
NmuCI GTSAC 1 cut(s) 1024
PciSI GCTCTTC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 4 cut(s) 61, 119, 983, 1291
PpuMI RGGWCCY 2 cut(s) 719, 1078
Psp124BI GAGCTC 2 cut(s) 321, 747
Psp1406I AACGTT 1 cut(s) 582
Psp5II RGGWCCY 2 cut(s) 719, 1078
Psp6I CCWGG 4 cut(s) 1012, 1047, 1302, 1333
PspGI CCWGG 4 cut(s) 1012, 1047, 1302, 1333
PspN4I GGNNCC 9 cut(s) 21, 39, 449, 631, 720, 721, 1079, 1167, 1434
PspOMI GGGCCC 1 cut(s) 1432
PspPI GGNCC 4 cut(s) 719, 1078, 1432, 1433
PspPPI RGGWCCY 2 cut(s) 719, 1078
PstI CTGCAG 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 689
RsaI GTAC 1 cut(s) 1538
RsaNI GTAC 1 cut(s) 1537
SacI GAGCTC 2 cut(s) 321, 747
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 2 cut(s) 369, 1353
Sau3AI GATC 4 cut(s) 166, 208, 216, 338
Sau96I GGNCC 4 cut(s) 719, 1078, 1432, 1433
ScaI AGTACT 1 cut(s) 1538
ScrFI CCNGG 5 cut(s) 1014, 1049, 1076, 1304, 1335
SduI GDGCHC 7 cut(s) 310, 321, 700, 747, 1074, 1302, 1436
SexAI ACCWGGT 1 cut(s) 1302
SfaNI GCATC 4 cut(s) 645, 760, 1316, 1407
SfcI CTRYAG 3 cut(s) 261, 1128, 1263
SinI GGWCC 2 cut(s) 719, 1078
SmlI CTYRAG 3 cut(s) 434, 624, 1504
SmoI CTYRAG 3 cut(s) 434, 624, 1504
SpeI ACTAGT 2 cut(s) 158, 391
Sse9I AATT 4 cut(s) 93, 344, 774, 1391
SsiI CCGC 6 cut(s) 68, 82, 464, 1118, 1141, 1163
SspI AATATT 2 cut(s) 613, 1114
SspMI CTAG 5 cut(s) 159, 392, 875, 1232, 1382
SstI GAGCTC 2 cut(s) 321, 747
StyD4I CCNGG 5 cut(s) 1012, 1047, 1074, 1302, 1333
TaaI ACNGT 5 cut(s) 188, 333, 429, 679, 1067
TaiI ACGT 1 cut(s) 585
TaqI TCGA 1 cut(s) 215
TasI AATT 4 cut(s) 93, 344, 774, 1391
TatI WGTACW 1 cut(s) 1536
TauI GCSGC 3 cut(s) 85, 467, 1121
TfiI GAWTC 4 cut(s) 61, 119, 983, 1291
Tru1I TTAA 2 cut(s) 369, 1353
Tru9I TTAA 2 cut(s) 369, 1353
TscAI CASTG 4 cut(s) 193, 249, 566, 1072
TseFI GTSAC 1 cut(s) 1024
TseI GCWGC 7 cut(s) 85, 362, 440, 689, 734, 1094, 1373
Tsp45I GTSAC 1 cut(s) 1024
TspDTI ATGAA 6 cut(s) 219, 396, 438, 531, 1035, 1330
TspGWI ACGGA 1 cut(s) 755
TspRI CASTG 4 cut(s) 193, 249, 566, 1072
VpaK11BI GGWCC 2 cut(s) 719, 1078
XagI CCTNNNNNAGG 3 cut(s) 713, 1085, 1266
XapI RAATTY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 5 cut(s) 159, 392, 875, 1232, 1382
ZrmI AGTACT 1 cut(s) 1538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.