Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012483

Physical Location & Seq

Genomic Coordinates Forward (+)

14699171 .. 14701629

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGATGCTTCCAAACAAGGGTTCAACTGTGCGAACAGCTGCTTGGGCACTATCAAACCTAATCAAGGGACCTAATCCAAAGGCTGCAACGGAGCTCATTAGAGTTGATGGGGTATTGGATGCACTTATTCGACACTTGAGAAAAGCAGATGATGAGTTAGCAACTGAAGTAGCATGGGTGGTTGTGTATCTCTCAGCCCTTTCAAATCTTGCCACCAGTATGCTAGTGAAGAGTGATGTCCTTCAACTGCTTGTGGAGAGATTGGCAACATCCAATAGTTTGCAGTTGCTTATTCCGGTGCTAAGAAGTTTAGGTAACCTTATAGCTGGTGATTCACAGACAACCCAAGCTCTTATCGTTCCTGGGCATGAAATCACAGGAAACATAATTGAAGTCCTGGTGAAATGTTTGAATAGTGAGCACCGGGTCCTGAAGAAGGAAGCAGCTTGGGTGCTATCTAATATAGCGGCTGGTTCTGTAGAGCACAAGCAGTTAATATATTCAAGTGACGCAGTGCCAGTGCTATTACGCCTCCTTTCCACAGCCCCATTTGATATAAGAAAGGAAGTAGCATATGTACTAGGCAACCTCTGTGTTCTTCCTATTTCACCTACAGAATGTGATGGAAAACCGAACTTTATTCTGGAGCACTTGGTTTCACTTGTTGGTCGAGGATGCCTTGCTGGTTTCATTGATTTGGTTAACTCTGCTGATATTGAAGCTGCAAGACTCGGACTACAATTCACGGAACTGGTTTTGAGAGGGATGCCGAACGGTGAGGGCCCAAAGCTTGTTGAGAAAGAAAATGGGATCGAAGCGATGGAAAGGTTTCAGTTTCATGAAAACGAGGACTTGCGAAATATGGCGAATAGTCTGGTGGATAAGTACTTTGGGGAGGACTATGGGCTAGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048471 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

306

Amino Acids

33.27

Weight (kDa)

5.19

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	128 - 157	7.3e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	160 - 198	2.2e-07	Armadillo/beta-catenin-like repeat
Arm_3	PF16186	264 - 301	3.6e-06	Atypical Arm repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03070
fragaria_vesca	FvH4_6g15480 FvH4_6g15480 FvH4_6g15480
malus_domestica	MD12G1123100.v1.1
prunus_persica	Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1
pyrus_communis	pycom04g09800 pycom12g12180
rosa_chinensis	RchiOBHm_Chr3g0468961
rosa_laevigata	RLG00000024396
rosa_multiflora	Rmu_sc0001639.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412420
rosa_rugosa	Rorug03G0097900.1
rosa_samantha	Rh3AG147600 Rh3BG170200 Rh3DG204900
rosa_wichuraiana	Rw3G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	818
AcuI	CTGAAG	2 cut(s)	186, 452
AfaI	GTAC	2 cut(s)	579, 887
AfiI	CCNNNNNNNGG	3 cut(s)	17, 64, 436
AgsI	TTSAA	7 cut(s)	24, 204, 245, 392, 412, 504, 719
AjnI	CCWGG	2 cut(s)	361, 396
AjuI	GAANNNNNNNTTGG	3 cut(s)	25, 36, 57
AluBI	AGCT	7 cut(s)	38, 94, 326, 350, 446, 722, 790
AluI	AGCT	7 cut(s)	38, 94, 326, 350, 446, 722, 790
Alw21I	GWGCWC	4 cut(s)	96, 423, 486, 651
AlwI	GGATC	1 cut(s)	818
AoxI	GGCC	1 cut(s)	781
ApaI	GGGCCC	1 cut(s)	785
ApeKI	GCWGC	4 cut(s)	38, 83, 443, 722
Asp700I	GAANNNNTTC	1 cut(s)	828
AspS9I	GGNCC	4 cut(s)	68, 427, 781, 782
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	341, 412, 600, 788
AvaII	GGWCC	2 cut(s)	68, 427
BaeGI	GKGCMC	2 cut(s)	49, 785
BanII	GRGCYC	2 cut(s)	96, 785
Bbv12I	GWGCWC	4 cut(s)	96, 423, 486, 651
BbvI	GCAGC	4 cut(s)	25, 70, 455, 709
BccI	CCATC	3 cut(s)	101, 617, 814
BciT130I	CCWGG	2 cut(s)	363, 398
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	3 cut(s)	224, 581, 908
BfmI	CTRYAG	2 cut(s)	477, 612
BisI	GCNGC	5 cut(s)	39, 84, 444, 468, 723
BlsI	GCNGC	5 cut(s)	40, 85, 445, 469, 724
BmcAI	AGTACT	1 cut(s)	887
Bme1390I	CCNGG	3 cut(s)	363, 398, 425
Bme18I	GGWCC	2 cut(s)	68, 427
BmgT120I	GGNCC	4 cut(s)	68, 427, 781, 782
BmiI	GGNNCC	3 cut(s)	69, 428, 783
BmrFI	CCNGG	3 cut(s)	363, 398, 425
BmsI	GCATC	3 cut(s)	109, 665, 756
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	362
BsaWI	WCCGGW	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 64, 436
Bse1I	ACTGG	3 cut(s)	216, 518, 756
BseBI	CCWGG	2 cut(s)	363, 398
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	4 cut(s)	124, 269, 680, 771
BseLI	CCNNNNNNNGG	3 cut(s)	17, 64, 436
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	3 cut(s)	216, 518, 756
BseSI	GKGCMC	2 cut(s)	49, 785
BseXI	GCAGC	4 cut(s)	25, 70, 455, 709
BshFI	GGCC	1 cut(s)	783
BsiHKAI	GWGCWC	4 cut(s)	96, 423, 486, 651
BsiSI	CCGG	2 cut(s)	296, 424
BslFI	GGGAC	1 cut(s)	81
BslI	CCNNNNNNNGG	3 cut(s)	17, 64, 436
BsmFI	GGGAC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	783
Bsp120I	GGGCCC	1 cut(s)	781
Bsp1286I	GDGCHC	6 cut(s)	49, 96, 423, 486, 651, 785
Bsp143I	GATC	1 cut(s)	810
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	838
BspLI	GGNNCC	3 cut(s)	69, 428, 783
BspPI	GGATC	1 cut(s)	818
BsrI	ACTGG	3 cut(s)	216, 518, 756
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	810
Bst2UI	CCWGG	2 cut(s)	363, 398
Bst4CI	ACNGT	2 cut(s)	28, 776
Bst6I	CTCTTC	1 cut(s)	224
BstDEI	CTNAG	2 cut(s)	193, 302
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	2 cut(s)	62, 434
BstF5I	GGATG	4 cut(s)	124, 269, 680, 771
BstKTI	GATC	1 cut(s)	813
BstMBI	GATC	1 cut(s)	810
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	2 cut(s)	363, 398
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	361, 396, 423
BstSFI	CTRYAG	2 cut(s)	477, 612
BstSLI	GKGCMC	2 cut(s)	49, 785
BstV1I	GCAGC	4 cut(s)	25, 70, 455, 709
BsuRI	GGCC	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	833
BtsCI	GGATG	4 cut(s)	124, 269, 680, 771
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	2 cut(s)	519, 525
CciI	TCATGA	1 cut(s)	838
Cfr13I	GGNCC	4 cut(s)	68, 427, 781, 782
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	578, 886
CviAII	CATG	3 cut(s)	174, 368, 839
CviQI	GTAC	2 cut(s)	578, 886
DdeI	CTNAG	2 cut(s)	193, 302
DpnI	GATC	1 cut(s)	812
DpnII	GATC	1 cut(s)	810
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	96, 785
Eco47I	GGWCC	2 cut(s)	68, 427
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	2 cut(s)	186, 452
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	2 cut(s)	62, 434
EcoO109I	RGGNCCY	3 cut(s)	68, 427, 781
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	361, 396
EcoT38I	GRGCYC	2 cut(s)	96, 785
FaeI	CATG	3 cut(s)	177, 371, 842
FaqI	GGGAC	1 cut(s)	81
FatI	CATG	3 cut(s)	173, 367, 838
FauNDI	CATATG	1 cut(s)	574
Fnu4HI	GCNGC	5 cut(s)	39, 84, 444, 468, 723
FokI	GGATG	4 cut(s)	131, 256, 687, 778
FriOI	GRGCYC	2 cut(s)	96, 785
Fsp4HI	GCNGC	5 cut(s)	39, 84, 444, 468, 723
FspBI	CTAG	3 cut(s)	224, 581, 908
GluI	GCNGC	5 cut(s)	39, 84, 444, 468, 723
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	1 cut(s)	783
HapII	CCGG	2 cut(s)	296, 424
HgaI	GACGC	1 cut(s)	518
Hin1II	CATG	3 cut(s)	177, 371, 842
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	2 cut(s)	332, 729
HpaI	GTTAAC	1 cut(s)	703
HpaII	CCGG	2 cut(s)	296, 424
HphI	GGTGA	4 cut(s)	341, 412, 600, 788
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	1 cut(s)	734
Hpy188III	TCNNGA	3 cut(s)	430, 644, 839
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	2 cut(s)	251, 430
HpyCH4III	ACNGT	2 cut(s)	28, 776
HpyCH4V	TGCA	4 cut(s)	86, 122, 283, 725
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	193, 302
Hsp92II	CATG	3 cut(s)	177, 371, 842
KspAI	GTTAAC	1 cut(s)	703
Kzo9I	GATC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	91, 646
Lsp1109I	GCAGC	4 cut(s)	25, 70, 455, 709
LweI	GCATC	3 cut(s)	109, 665, 756
MaeI	CTAG	3 cut(s)	224, 581, 908
MaeIII	GTNAC	2 cut(s)	314, 506
MalI	GATC	1 cut(s)	812
MboI	GATC	1 cut(s)	810
MboII	GAAGA	3 cut(s)	241, 445, 590
MhlI	GDGCHC	6 cut(s)	49, 96, 423, 486, 651, 785
MluCI	AATT	2 cut(s)	387, 740
MlyI	GAGTC	1 cut(s)	723
MnlI	CCTC	7 cut(s)	542, 599, 665, 755, 772, 841, 889
MroXI	GAANNNNTTC	1 cut(s)	828
MseI	TTAA	2 cut(s)	494, 702
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	2 cut(s)	296, 424
MspR9I	CCNGG	3 cut(s)	363, 398, 425
MvaI	CCWGG	2 cut(s)	363, 398
MwoI	GCNNNNNNNGC	1 cut(s)	44
NciI	CCSGG	1 cut(s)	425
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	1 cut(s)	810
NlaIII	CATG	3 cut(s)	177, 371, 842
NlaIV	GGNNCC	3 cut(s)	69, 428, 783
NmuCI	GTSAC	1 cut(s)	506
PagI	TCATGA	1 cut(s)	838
PdmI	GAANNNNTTC	1 cut(s)	828
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	5 cut(s)	40, 85, 445, 469, 724
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
PpuMI	RGGWCCY	2 cut(s)	68, 427
Psp124BI	GAGCTC	1 cut(s)	96
Psp5II	RGGWCCY	2 cut(s)	68, 427
Psp6I	CCWGG	2 cut(s)	361, 396
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	361, 396
PspN4I	GGNNCC	3 cut(s)	69, 428, 783
PspOMI	GGGCCC	1 cut(s)	781
PspPI	GGNCC	4 cut(s)	68, 427, 781, 782
PspPPI	RGGWCCY	2 cut(s)	68, 427
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	579, 887
RsaNI	GTAC	2 cut(s)	578, 886
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	494, 702
SatI	GCNGC	5 cut(s)	39, 84, 444, 468, 723
Sau3AI	GATC	1 cut(s)	810
Sau96I	GGNCC	4 cut(s)	68, 427, 781, 782
ScaI	AGTACT	1 cut(s)	887
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	3 cut(s)	363, 398, 425
SduI	GDGCHC	6 cut(s)	49, 96, 423, 486, 651, 785
SfaNI	GCATC	3 cut(s)	109, 665, 756
SfcI	CTRYAG	2 cut(s)	477, 612
SinI	GGWCC	2 cut(s)	68, 427
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	2 cut(s)	387, 740
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	3 cut(s)	224, 581, 908
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	3 cut(s)	361, 396, 423
TaaI	ACNGT	2 cut(s)	28, 776
TaqI	TCGA	3 cut(s)	130, 670, 813
TasI	AATT	2 cut(s)	387, 740
TatI	WGTACW	2 cut(s)	577, 885
TauI	GCSGC	1 cut(s)	470
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	494, 702
Tru9I	TTAA	2 cut(s)	494, 702
TscAI	CASTG	2 cut(s)	519, 525
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	4 cut(s)	38, 83, 443, 722
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	384, 679, 827, 855
TspGWI	ACGGA	2 cut(s)	104, 761
TspRI	CASTG	2 cut(s)	519, 525
VpaK11BI	GGWCC	2 cut(s)	68, 427
XagI	CCTNNNNNAGG	2 cut(s)	62, 434
XmnI	GAANNNNTTC	1 cut(s)	828
XspI	CTAG	3 cut(s)	224, 581, 908
ZrmI	AGTACT	1 cut(s)	887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.