Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012483

Physical Location & Seq

Genomic Coordinates Forward (+)

12564741 .. 12566556

Gene Structure 1816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCTAGTGAAGAGTGATGTCCTTCAATTGCTCGTGCAGAGATTGGCTATGTCCAATAGTTTGCAGTTGCTTATTCCGGTGCTAAGAAGTTTAGGCAATCTTATAGCTAGTGATTCACAGACAACCCAAGCTGTTATTGTTCCTGAGCATGAAATCACAGGAAACATAATTGAAGTCCTGGTAAAATGTTTGAATAGTGAGCACCGGGTCCTGAAGAAGGAAGCAGCTTGGGTGCTATCTAATATTGCGGCTGGTTCTGTAGAGCACAAGCAGTTGATATATTCAAGTGAGGCGGTGCCAGTGCTATTACGCCTCCTTTCTACGGCACCATTTGATATAAGAAAGGAAGTAGCGTATGTACTAGGCAACCTCTGTGTGTCTCCTATTTCACCTACAGAAGGTGACGGAAAACCAAGCTTGATTCTGGAGCACTTGGTTTCACTTGTTGGTAGAGGATGCCTCGCTGGTTTCATTGATTTGGTTAACTTGGCTGATACTGAAGCTGCAAGACTAGGACTACAATTCACGGAACTGGTTTTGAGAGGGATGCCGAACGGTGAGGGCCCAAAGCTTGTTGAGAAAGAAAATGGGATCGATGCAATGGAAAGGTTTCAATTTCATGAAAACGAGGACTTGAGAAACATGGCTAACAGTCTGGTGGATAAGTACTTTGGAGAGGACTATGGGCTTGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048471 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

233

Amino Acids

25.43

Weight (kDa)

4.95

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03070
fragaria_vesca	FvH4_6g15480 FvH4_6g15480 FvH4_6g15480
malus_domestica	MD12G1123100.v1.1
prunus_persica	Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1
pyrus_communis	pycom04g09800 pycom12g12180
rosa_chinensis	RchiOBHm_Chr3g0468961
rosa_laevigata	RLG00000024396
rosa_multiflora	Rmu_sc0001639.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412420
rosa_rugosa	Rorug03G0097900.1
rosa_samantha	Rh3AG147600 Rh3BG170200 Rh3DG204900
rosa_wichuraiana	Rw3G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	295, 325
AciI	CCGC	2 cut(s)	248, 293
AclWI	GGATC	1 cut(s)	599
AcuI	CTGAAG	2 cut(s)	233, 519
AfaI	GTAC	2 cut(s)	360, 668
AfiI	CCNNNNNNNGG	3 cut(s)	217, 322, 398
AgsI	TTSAA	5 cut(s)	26, 173, 193, 285, 614
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	6 cut(s)	107, 131, 227, 417, 503, 571
AluI	AGCT	6 cut(s)	107, 131, 227, 417, 503, 571
Alw21I	GWGCWC	3 cut(s)	204, 267, 432
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	562
ApaI	GGGCCC	1 cut(s)	566
ApeKI	GCWGC	2 cut(s)	224, 503
Asp700I	GAANNNNTTC	1 cut(s)	609
AspS9I	GGNCC	3 cut(s)	208, 562, 563
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	381, 413, 569
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	566
BanI	GGYRCC	2 cut(s)	295, 325
BanII	GRGCYC	1 cut(s)	566
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	3 cut(s)	204, 267, 432
BbvI	GCAGC	2 cut(s)	236, 490
BceAI	ACGGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	4 cut(s)	5, 108, 362, 512
BfmI	CTRYAG	2 cut(s)	258, 393
BisI	GCNGC	3 cut(s)	225, 249, 504
BlsI	GCNGC	3 cut(s)	226, 250, 505
BmcAI	AGTACT	1 cut(s)	668
Bme1390I	CCNGG	2 cut(s)	179, 206
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	3 cut(s)	208, 562, 563
BmiI	GGNNCC	4 cut(s)	209, 297, 327, 564
BmrFI	CCNGG	2 cut(s)	179, 206
BmsI	GCATC	3 cut(s)	446, 537, 586
BplI	GAGNNNNNCTC	2 cut(s)	444, 476
BpmI	CTGGAG	1 cut(s)	446
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	206
Bsa29I	ATCGAT	1 cut(s)	594
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 322, 398
Bse1I	ACTGG	2 cut(s)	299, 537
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	179
BseCI	ATCGAT	1 cut(s)	594
BseGI	GGATG	2 cut(s)	461, 552
BseLI	CCNNNNNNNGG	3 cut(s)	217, 322, 398
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	299, 537
BseSI	GKGCMC	1 cut(s)	566
BseXI	GCAGC	2 cut(s)	236, 490
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	564
BshNI	GGYRCC	2 cut(s)	295, 325
BshVI	ATCGAT	1 cut(s)	594
BsiHKAI	GWGCWC	3 cut(s)	204, 267, 432
BsiSI	CCGG	2 cut(s)	77, 205
BslI	CCNNNNNNNGG	3 cut(s)	217, 322, 398
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	564
Bsp120I	GGGCCC	1 cut(s)	562
Bsp1286I	GDGCHC	4 cut(s)	204, 267, 432, 566
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	2 cut(s)	248, 293
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	4 cut(s)	209, 297, 327, 564
BspPI	GGATC	1 cut(s)	599
BspT107I	GGYRCC	2 cut(s)	295, 325
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	299, 537
BssMI	GATC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	557, 653
Bst6I	CTCTTC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	83, 144
BstENI	CCTNNNNNAGG	2 cut(s)	215, 396
BstF5I	GGATG	2 cut(s)	461, 552
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	591
BstNI	CCWGG	1 cut(s)	179
BstSCI	CCNGG	2 cut(s)	177, 204
BstSFI	CTRYAG	2 cut(s)	258, 393
BstSLI	GKGCMC	1 cut(s)	566
BstV1I	GCAGC	2 cut(s)	236, 490
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	461, 552
BtsIMutI	CAGTG	1 cut(s)	306
CciI	TCATGA	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	208, 562, 563
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	359, 667
CviAII	CATG	3 cut(s)	149, 620, 643
CviQI	GTAC	2 cut(s)	359, 667
DdeI	CTNAG	2 cut(s)	83, 144
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	233, 519
EcoNI	CCTNNNNNAGG	2 cut(s)	215, 396
EcoO109I	RGGNCCY	2 cut(s)	208, 562
EcoRII	CCWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	566
FaeI	CATG	3 cut(s)	152, 623, 646
FatI	CATG	3 cut(s)	148, 619, 642
Fnu4HI	GCNGC	3 cut(s)	225, 249, 504
FokI	GGATG	2 cut(s)	468, 559
FriOI	GRGCYC	1 cut(s)	566
Fsp4HI	GCNGC	3 cut(s)	225, 249, 504
FspBI	CTAG	4 cut(s)	5, 108, 362, 512
GluI	GCNGC	3 cut(s)	225, 249, 504
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	564
HapII	CCGG	2 cut(s)	77, 205
Hin1II	CATG	3 cut(s)	152, 623, 646
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HindIII	AAGCTT	2 cut(s)	415, 569
HinfI	GANTC	2 cut(s)	113, 421
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	2 cut(s)	77, 205
HphI	GGTGA	3 cut(s)	381, 413, 569
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188III	TCNNGA	4 cut(s)	143, 211, 425, 620
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	3 cut(s)	32, 211, 392
HpyCH4III	ACNGT	2 cut(s)	557, 653
HpyCH4V	TGCA	4 cut(s)	37, 64, 506, 599
HpyF3I	CTNAG	2 cut(s)	83, 144
Hsp92II	CATG	3 cut(s)	152, 623, 646
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	2 cut(s)	236, 490
LweI	GCATC	3 cut(s)	446, 537, 586
MaeI	CTAG	4 cut(s)	5, 108, 362, 512
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	2 cut(s)	22, 226
MfeI	CAATTG	1 cut(s)	26
MhlI	GDGCHC	4 cut(s)	204, 267, 432, 566
MluCI	AATT	4 cut(s)	26, 168, 521, 614
MnlI	CCTC	9 cut(s)	283, 323, 380, 446, 470, 536, 553, 622, 670
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	483
MspI	CCGG	2 cut(s)	77, 205
MspR9I	CCNGG	2 cut(s)	179, 206
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	179
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	152, 623, 646
NlaIV	GGNNCC	4 cut(s)	209, 297, 327, 564
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	113, 421
PkrI	GCNGC	3 cut(s)	226, 250, 505
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	4 cut(s)	209, 297, 327, 564
PspOMI	GGGCCC	1 cut(s)	562
PspPI	GGNCC	3 cut(s)	208, 562, 563
PspPPI	RGGWCCY	1 cut(s)	208
RsaI	GTAC	2 cut(s)	360, 668
RsaNI	GTAC	2 cut(s)	359, 667
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	3 cut(s)	225, 249, 504
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	3 cut(s)	208, 562, 563
ScaI	AGTACT	1 cut(s)	668
ScrFI	CCNGG	2 cut(s)	179, 206
SduI	GDGCHC	4 cut(s)	204, 267, 432, 566
SfaNI	GCATC	3 cut(s)	446, 537, 586
SfcI	CTRYAG	2 cut(s)	258, 393
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	4 cut(s)	26, 168, 521, 614
SsiI	CCGC	2 cut(s)	248, 293
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	4 cut(s)	5, 108, 362, 512
StyD4I	CCNGG	2 cut(s)	177, 204
TaaI	ACNGT	2 cut(s)	557, 653
TaqI	TCGA	1 cut(s)	594
TasI	AATT	4 cut(s)	26, 168, 521, 614
TatI	WGTACW	2 cut(s)	358, 666
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	113, 421
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	224, 503
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	4 cut(s)	165, 460, 608, 636
TspGWI	ACGGA	2 cut(s)	420, 542
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	2 cut(s)	215, 396
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	4 cut(s)	5, 108, 362, 512
ZrmI	AGTACT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.