FvH4_6g15480

Belongs to the importin alpha family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
9613672 .. 9618137
4466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15480.t3

Sequence Viewer

Length: 1566 bp
ATGGCCGATGATACTACGGCTTCTCAAAGAAGAGACCCTATCAAATCGTCAGTTGGGAATGTTGCGGGACAGCGGAGGCGGCAGAATGCAATCACAGTGGGAAAAGAAAGAAGAGAATCGTTGATTCGTGCAAAGCGCTTGTGTAGAGAGGGGACTAATGGTGATAGTGTTGATCCGTTTGACGGTGAAATGATGATTGACCAAGAGCAGCCGATCTTGGAGGCTCAGACTTCTGCTGCTGTGGAAGAGTTGAAGTCTGCAGTTGCACATCAGGGGAAAGGTGCTTGGCAAAAGAGGGTGAGCACCCTGCGTGCACTCAGGCGCTTACTGTCTAGATCAGAATTTCCTCCTGTTGATGCTGCTCTTAAAGCTGGTGCAGTACCTTTACTAGTGCAATGCCTTTCATTTGGCTCTCCGGATGAACAGTTGCTTGAGGCAGCTTGGTGCCTTACAAACATAGCAGCAGGGAAACCTGAGGAAACAAAAGCTTTGTTGCCAGCCTTACCACTACTTATTGCTCATCTTGGAGAAAAGAGTTCCGCGCCTGTTGCTGAGCAATGTGCATGGGCGATCGGAAACGTAGCTGGTGAAGGCGAAGAGCTGAGAAATGTTTTGCTTTCTCAGGGTGCCTTACCACCTCTGGCAAGAATGATGCTTCCAGACAAGGGTTCAACTGTGAGAACAGCTGCTTGGGCACTGTCGAACCTAATCAAGGGACCCAATCCAAAGGCTTCAAATGAGCTCATTAGAGTTGAAGGAGTACTGGATGCAATTATACGGCACCTGAGAAAGGCAGACGACGAGTTAGCAACTGAAGCTGCATGGGTGGTTGTGTACCTGTCTGCCCTTTCAAATATTGCTACCAGTATGCTAGTAAAGAGTGATGTCCTTCAACTGCTTGTGGAAAGATTGGCGACATCCAATAGTTTACAATTACTTATTCCGGTTCTGAGGAGTTTAGGTAATCTAATAGCTGGCGATTCACAGACAACCCATGCTATTATTGTCCCTGGGAATGACATCACAGGTAACATCATAGAAGTCCTTGTGAAATGTTTGAGAGGTGAACACCGGGTCCTAAAGAAGGAAGCTGCTTGGGTGCTATCTAATATAGCTGCTGGTTCTATAGAACACAAGCAGTTGATATACTCAAGTGAGGCCGTGCCATTGCTGATACGACTTCTTTCCACAGCACCATTTGATATACGAAAAGAAGTAGCATATGTACTAGGCAACCTCTGTGTTTCCCCTATAACACCAACAGAAGGCGATGGAAAGCCAACTCTAATTCTGGAGCACTTGGTTTCACTTGTTGGTAGAGGATGCCTTCCTGGTTTCATTGATTTGGTTAGCTCTGTTGATACTGAAGCTGCAAGAGTAGGACTACAATTCATGGAACTGGTTTTGAGAGGGATGCCGAATGGTGAGGGGCCAAAGCTGGTTGAGAATGAGAATGGGATTGAAGCGATGGAAAGGTTTCAGTTTCATGAGAATGAAGACTTGAGAAATATGGCAAATACTCTAGTAGATAAGTACTTTGGAGAGGATTATGGGCTTGATGACTAG

Protein Analysis

522

Amino Acids

56.38

Weight (kDa)

5.45

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arm PF00514 117 - 155 2.3e-07 Armadillo/beta-catenin-like repeat
HEAT_EZ PF13513 144 - 194 6.7e-06 HEAT-like repeat
Arm PF00514 201 - 236 1.9e-06 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012483)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 444, 626, 780
AccII CGCG 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 415
AciI CCGC 4 cut(s) 65, 73, 79, 540
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 2 cut(s) 834, 1386
AfaI GTAC 5 cut(s) 381, 762, 836, 1227, 1535
AfeI AGCGCT 1 cut(s) 137
AfiI CCNNNNNNNGG 6 cut(s) 182, 665, 712, 790, 1084, 1265
AgsI TTSAA 7 cut(s) 253, 672, 735, 755, 852, 893, 1463
AhlI ACTAGT 1 cut(s) 388
AjnI CCWGG 2 cut(s) 1009, 1330
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AloI GAACNNNNNNTCC 2 cut(s) 1059, 1091
Alw21I GWGCWC 4 cut(s) 305, 316, 744, 1299
Alw26I GTCTC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 1 cut(s) 167
Aor13HI TCCGGA 1 cut(s) 415
Aor51HI AGCGCT 1 cut(s) 137
AoxI GGCC 3 cut(s) 3, 1158, 1430
ApaLI GTGCAC 1 cut(s) 312
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 1476
AspLEI GCGC 3 cut(s) 138, 324, 544
AspS9I GGNCC 3 cut(s) 716, 1075, 1430
AsuC2I CCSGG 1 cut(s) 1073
AsuHPI GGTGA 6 cut(s) 173, 197, 310, 599, 1076, 1436
AvaII GGWCC 2 cut(s) 716, 1075
AxyI CCTNAGG 1 cut(s) 474
BaeGI GKGCMC 2 cut(s) 316, 697
BanI GGYRCC 3 cut(s) 444, 626, 780
BanII GRGCYC 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 1503
Bbv12I GWGCWC 4 cut(s) 305, 316, 744, 1299
BccI CCATC 2 cut(s) 1265, 1462
BceAI ACGGC 3 cut(s) 33, 794, 1145
BciT130I CCWGG 2 cut(s) 1011, 1332
BcnI CCSGG 1 cut(s) 1073
BcoDI GTCTC 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 388
BfaI CTAG 6 cut(s) 333, 389, 872, 1229, 1523, 1564
BfmI CTRYAG 2 cut(s) 258, 1125
BfoI RGCGCY 2 cut(s) 139, 325
BlpI GCTNAGC 1 cut(s) 552
BmcAI AGTACT 2 cut(s) 762, 1535
Bme1390I CCNGG 3 cut(s) 1011, 1073, 1332
Bme18I GGWCC 2 cut(s) 716, 1075
BmgT120I GGNCC 3 cut(s) 716, 1075, 1430
BmiI GGNNCC 7 cut(s) 446, 628, 717, 718, 782, 1076, 1431
BmrFI CCNGG 3 cut(s) 1011, 1073, 1332
BmsI GCATC 5 cut(s) 346, 642, 757, 1313, 1404
BpiI GAAGAC 1 cut(s) 1503
BpmI CTGGAG 1 cut(s) 1313
Bpu1102I GCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 452, 1135, 1522
BpuMI CCSGG 1 cut(s) 1073
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 2 cut(s) 1009, 1010
BsaWI WCCGGW 2 cut(s) 415, 943
BsaXI ACNNNNNCTCC 2 cut(s) 946, 976
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 665, 712, 790, 1084, 1265
Bse1I ACTGG 3 cut(s) 768, 864, 1404
Bse21I CCTNAGG 1 cut(s) 474
Bse3DI GCAATG 3 cut(s) 401, 563, 1166
BseAI TCCGGA 1 cut(s) 415
BseBI CCWGG 2 cut(s) 1011, 1332
BseDI CCNNGG 2 cut(s) 1009, 1010
BseGI GGATG 5 cut(s) 424, 772, 917, 1328, 1419
BseLI CCNNNNNNNGG 6 cut(s) 182, 665, 712, 790, 1084, 1265
BseMI GCAATG 3 cut(s) 401, 563, 1166
BseMII CTCAG 8 cut(s) 239, 331, 465, 543, 593, 635, 776, 941
BseNI ACTGG 3 cut(s) 768, 864, 1404
BseRI GAGGAG 1 cut(s) 967
BseSI GKGCMC 2 cut(s) 316, 697
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 573
BshFI GGCC 3 cut(s) 5, 1160, 1432
BshNI GGYRCC 3 cut(s) 444, 626, 780
BsiEI CGRYCG 1 cut(s) 573
BsiHKAI GWGCWC 4 cut(s) 305, 316, 744, 1299
BsiSI CCGG 3 cut(s) 416, 944, 1072
BslFI GGGAC 4 cut(s) 81, 166, 729, 992
BslI CCNNNNNNNGG 6 cut(s) 182, 665, 712, 790, 1084, 1265
BsmAI GTCTC 1 cut(s) 27
BsmFI GGGAC 4 cut(s) 81, 166, 729, 992
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 3 cut(s) 5, 1160, 1432
Bso31I GGTCTC 1 cut(s) 27
Bsp1286I GDGCHC 5 cut(s) 305, 316, 697, 744, 1299
Bsp13I TCCGGA 1 cut(s) 415
Bsp143I GATC 4 cut(s) 172, 213, 335, 570
Bsp1720I GCTNAGC 1 cut(s) 552
BspACI CCGC 4 cut(s) 65, 73, 79, 540
BspANI GGCC 3 cut(s) 5, 1160, 1432
BspCNI CTCAG 8 cut(s) 238, 330, 466, 544, 594, 634, 777, 942
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 1 cut(s) 542
BspHI TCATGA 1 cut(s) 1486
BspLI GGNNCC 7 cut(s) 446, 628, 717, 718, 782, 1076, 1431
BspMAI CTGCAG 1 cut(s) 262
BspPI GGATC 1 cut(s) 167
BspQI GCTCTTC 1 cut(s) 591
BspT107I GGYRCC 3 cut(s) 444, 626, 780
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 401, 563, 1166
BsrI ACTGG 3 cut(s) 768, 864, 1404
BssECI CCNNGG 2 cut(s) 1009, 1010
BssMI GATC 4 cut(s) 172, 213, 335, 570
Bst2UI CCWGG 2 cut(s) 1011, 1332
Bst4CI ACNGT 6 cut(s) 97, 185, 330, 426, 676, 699
Bst6I CTCTTC 4 cut(s) 25, 106, 240, 591
BstC8I GCNNGC 3 cut(s) 312, 498, 976
BstDEI CTNAG 8 cut(s) 225, 317, 474, 552, 602, 621, 785, 950
BstENI CCTNNNNNAGG 3 cut(s) 710, 788, 1082
BstF5I GGATG 5 cut(s) 424, 772, 917, 1328, 1419
BstFNI CGCG 1 cut(s) 542
BstH2I RGCGCY 2 cut(s) 139, 325
BstHHI GCGC 3 cut(s) 138, 324, 544
BstKTI GATC 4 cut(s) 175, 216, 338, 573
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 172, 213, 335, 570
BstMCI CGRYCG 1 cut(s) 573
BstMWI GCNNNNNNNGC 5 cut(s) 79, 368, 548, 692, 815
BstNI CCWGG 2 cut(s) 1011, 1332
BstSCI CCNGG 3 cut(s) 1009, 1071, 1330
BstSFI CTRYAG 2 cut(s) 258, 1125
BstSLI GKGCMC 2 cut(s) 316, 697
BstUI CGCG 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 1503
Bsu36I CCTNAGG 1 cut(s) 474
BsuRI GGCC 3 cut(s) 5, 1160, 1432
BtgZI GCGATG 2 cut(s) 1284, 1481
BtsCI GGATG 5 cut(s) 424, 772, 917, 1328, 1419
BtsIMutI CAGTG 2 cut(s) 102, 695
Cac8I GCNNGC 3 cut(s) 312, 498, 976
CciI TCATGA 1 cut(s) 1486
CfoI GCGC 3 cut(s) 138, 324, 544
Cfr13I GGNCC 3 cut(s) 716, 1075, 1430
Csp6I GTAC 5 cut(s) 380, 761, 835, 1226, 1534
CspCI CAANNNNNGTGG 2 cut(s) 78, 113
CviAII CATG 5 cut(s) 564, 822, 995, 1393, 1487
CviQI GTAC 5 cut(s) 380, 761, 835, 1226, 1534
DdeI CTNAG 8 cut(s) 225, 317, 474, 552, 602, 621, 785, 950
DpnI GATC 4 cut(s) 174, 215, 337, 572
DpnII GATC 4 cut(s) 172, 213, 335, 570
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 25, 106, 240, 591
EarI CTCTTC 4 cut(s) 25, 106, 240, 591
Ecl136II GAGCTC 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 716, 1075
Eco47III AGCGCT 1 cut(s) 137
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 2 cut(s) 834, 1386
Eco81I CCTNAGG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 742
EcoNI CCTNNNNNAGG 3 cut(s) 710, 788, 1082
EcoO109I RGGNCCY 2 cut(s) 716, 1075
EcoRII CCWGG 2 cut(s) 1009, 1330
EcoT38I GRGCYC 1 cut(s) 744
FaeI CATG 5 cut(s) 567, 825, 998, 1396, 1490
FaqI GGGAC 4 cut(s) 81, 166, 729, 992
FatI CATG 5 cut(s) 563, 821, 994, 1392, 1486
FauI CCCGC 1 cut(s) 58
FauNDI CATATG 1 cut(s) 1222
FokI GGATG 5 cut(s) 431, 779, 904, 1335, 1426
FriOI GRGCYC 1 cut(s) 744
FspBI CTAG 6 cut(s) 333, 389, 872, 1229, 1523, 1564
GlaI GCGC 3 cut(s) 137, 323, 543
GsuI CTGGAG 1 cut(s) 1313
HaeII RGCGCY 2 cut(s) 139, 325
HaeIII GGCC 3 cut(s) 5, 1160, 1432
HapII CCGG 3 cut(s) 416, 944, 1072
HhaI GCGC 3 cut(s) 138, 324, 544
Hin1II CATG 5 cut(s) 567, 825, 998, 1396, 1490
Hin6I GCGC 3 cut(s) 136, 322, 542
HinP1I GCGC 3 cut(s) 136, 322, 542
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 3 cut(s) 116, 124, 980
HpaII CCGG 3 cut(s) 416, 944, 1072
HphI GGTGA 6 cut(s) 173, 197, 310, 599, 1076, 1436
Hpy166II GTNNAC 4 cut(s) 314, 835, 929, 1067
Hpy188I TCNGA 4 cut(s) 228, 340, 575, 951
Hpy188III TCNNGA 5 cut(s) 333, 416, 659, 1292, 1487
Hpy8I GTNNAC 4 cut(s) 314, 835, 929, 1067
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 6 cut(s) 584, 749, 899, 1078, 1259, 1337
HpyCH4III ACNGT 6 cut(s) 97, 185, 330, 426, 676, 699
HpyCH4IV ACGT 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 368, 548, 692, 815
HpyF3I CTNAG 8 cut(s) 225, 317, 474, 552, 602, 621, 785, 950
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 5 cut(s) 567, 825, 998, 1396, 1490
HspAI GCGC 3 cut(s) 136, 322, 542
KflI GGGWCCC 1 cut(s) 716
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 4 cut(s) 172, 213, 335, 570
LguI GCTCTTC 1 cut(s) 591
LmnI GCTCC 1 cut(s) 1294
LweI GCATC 5 cut(s) 346, 642, 757, 1313, 1404
MaeI CTAG 6 cut(s) 333, 389, 872, 1229, 1523, 1564
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 1028
MalI GATC 4 cut(s) 174, 215, 337, 572
MboI GATC 4 cut(s) 172, 213, 335, 570
MboII GAAGA 5 cut(s) 42, 123, 257, 608, 1508
MhlI GDGCHC 5 cut(s) 305, 316, 697, 744, 1299
MluCI AATT 5 cut(s) 341, 771, 932, 1287, 1388
MroI TCCGGA 1 cut(s) 415
MroXI GAANNNNTTC 1 cut(s) 1476
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 1491
MspA1I CMGCKG 2 cut(s) 73, 686
MspI CCGG 3 cut(s) 416, 944, 1072
MspR9I CCNGG 3 cut(s) 1011, 1073, 1332
Mva1269I GAATGC 1 cut(s) 91
MvaI CCWGG 2 cut(s) 1011, 1332
MvnI CGCG 1 cut(s) 542
MwoI GCNNNNNNNGC 5 cut(s) 79, 368, 548, 692, 815
NciI CCSGG 1 cut(s) 1073
NdeI CATATG 1 cut(s) 1222
NdeII GATC 4 cut(s) 172, 213, 335, 570
NlaIII CATG 5 cut(s) 567, 825, 998, 1396, 1490
NlaIV GGNNCC 7 cut(s) 446, 628, 717, 718, 782, 1076, 1431
PagI TCATGA 1 cut(s) 1486
PasI CCCWGGG 1 cut(s) 1010
PciSI GCTCTTC 1 cut(s) 591
PctI GAATGC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 1476
PfeI GAWTC 3 cut(s) 116, 124, 980
Ple19I CGATCG 1 cut(s) 573
PpuMI RGGWCCY 2 cut(s) 716, 1075
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 2 cut(s) 716, 1075
Psp6I CCWGG 2 cut(s) 1009, 1330
PspGI CCWGG 2 cut(s) 1009, 1330
PspN4I GGNNCC 7 cut(s) 446, 628, 717, 718, 782, 1076, 1431
PspPI GGNCC 3 cut(s) 716, 1075, 1430
PspPPI RGGWCCY 2 cut(s) 716, 1075
PstI CTGCAG 1 cut(s) 262
PvuI CGATCG 1 cut(s) 573
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 5 cut(s) 381, 762, 836, 1227, 1535
RsaNI GTAC 5 cut(s) 380, 761, 835, 1226, 1534
RseI CAYNNNNRTG 1 cut(s) 1491
SacI GAGCTC 1 cut(s) 744
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 1 cut(s) 366
Sau3AI GATC 4 cut(s) 172, 213, 335, 570
Sau96I GGNCC 3 cut(s) 716, 1075, 1430
ScaI AGTACT 2 cut(s) 762, 1535
ScrFI CCNGG 3 cut(s) 1011, 1073, 1332
SduI GDGCHC 5 cut(s) 305, 316, 697, 744, 1299
SfaNI GCATC 5 cut(s) 346, 642, 757, 1313, 1404
SfcI CTRYAG 2 cut(s) 258, 1125
SinI GGWCC 2 cut(s) 716, 1075
SmiMI CAYNNNNRTG 1 cut(s) 1491
SmlI CTYRAG 3 cut(s) 431, 1150, 1501
SmoI CTYRAG 3 cut(s) 431, 1150, 1501
SpeI ACTAGT 1 cut(s) 388
Sse9I AATT 5 cut(s) 341, 771, 932, 1287, 1388
SsiI CCGC 4 cut(s) 65, 73, 79, 540
SspI AATATT 1 cut(s) 856
SspMI CTAG 6 cut(s) 333, 389, 872, 1229, 1523, 1564
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 3 cut(s) 1009, 1071, 1330
TaaI ACNGT 6 cut(s) 97, 185, 330, 426, 676, 699
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 701
TasI AATT 5 cut(s) 341, 771, 932, 1287, 1388
TatI WGTACW 3 cut(s) 760, 1225, 1533
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 3 cut(s) 116, 124, 980
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 102, 702
TspDTI ATGAA 6 cut(s) 393, 435, 1327, 1381, 1475, 1509
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 2 cut(s) 102, 702
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 716, 1075
XagI CCTNNNNNAGG 3 cut(s) 710, 788, 1082
XapI RAATTY 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 1476
XspI CTAG 6 cut(s) 333, 389, 872, 1229, 1523, 1564
ZrmI AGTACT 2 cut(s) 762, 1535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.