Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012483

Physical Location & Seq

Genomic Coordinates Reverse (-)

14585882 .. 14590293

Gene Structure 4412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG170200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCCGATGATACTACGGCTTCTCACAGAAGAGACCCTATCAAATCCTCAGTTGGGAGTGTTGCGGGACAGCGGAGACGGCAGAATGCAATTACAGTGGGAAAAGAAAGAAGAGAATCGTTGGTTCGTGCAAAGCGCTTGTGTAGAGTGGGGACTAATGGTGACAGTGTTGATCCTCTTGACAGTGAAATGATTATCGATGAAGAGCAGCCAATCTTAGAGGCTCAAACATCTGCAGCAGTGGAAGAGTTGAAGTCTGCAGCTGCACATCAGGGGAAAGGTGCTTGGCAAAAGAGGGTGAGCGCCCTGCGTGAACTCAGGCGCTTACTGTCTAGATCAGAATTCCCTCCTGTTGATGCCGCTCTTAAAGCTGGTGCAGTGCCTTTACTAGTGCAGTGCCTCTCATTTGGCTCTCCAGATGAGCAGTTACTTGAGGCAGCTTGGTGCCTTACAAACATAGCAGCAGGGAAACCTGAGGAAACAAAAGCTTTGTTGCCAGCTTTACCACTACTTATTGCTTATCTTGGAGAAAAGAGCTCCGCGCCTGTTGCTGAGCAATGTGCATGGGCAATCGGAAACGTCGCTGGTGAAGGAGAAGAGCTGAGAAATGTTTTGCTTTCTCAGGGTGCCTTACCACCTCTTGCAAGAATGATGCTTCCAGACAAGGGTTCAACTGTGAGGACAGCTGCTTGGGCGCTGTCAAACCTAATCAAGGGACCCAATCCAAAGGCTGCAAATGAGCTCATTAGAGTTGAAGGAGTATTGGATGCAATTATACGGCACCTGAGAAAGGCAGATGATGAGTTAGCAACTGAAGTTGCATGGGTGGTTGTGTATCTCTCAGCCCTTTCAAATATTGCTACCAGTATGCTAGTGAAGAGTGATGTCCTTCAACTGCTTGTGGAAAGATTAGCGACATCCAACAGTTTACAGTTGCTTATTCCGGTGCTAAGGAGTTTAGGTAATCTTATAGCTGGTGATTCACAGACAACCCATGCTATTATTGCCCCTGGGAACGAAATCACAGGTAACATCATAGAGGTCTTGGTGAAATGTTTGAGGAGTGAACACAGGGTCCTAAAAAAGGAAGCTGCTTGGGTGCTGTCTAATATAGCTGCTGGTTCTATAGAACACAAGCAGTTGATATACTCAAGTGAGGCAGTGCCATTGCTGATACGCCTTCTTTCCACAGCACCATTTGATATTCGAAAAGAAGTAGCATATGTACTAGGCAACCTCTGTGTTTCCCCTATTACACCAACAGAAGGTGATGGAAAGCCAAGTCTGATTCTGGAGCACTTGGTTTCACTTGTTGTTAGAGGATGCCTTCCTGGTTTCATTGATTTGGTTAGTTCTGTTGATACTGAAGCTGCAAGAGTAGGACTACAGTTCATGGAACTGGTGAGTAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005048 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006606 GO:0006607 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008139 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0017038 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034504 GO:0034613 GO:0042277 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048471 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0072594

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

471

Amino Acids

50.63

Weight (kDa)

6.3

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arm	PF00514	117 - 155	2.9e-07	Armadillo/beta-catenin-like repeat
Arm	PF00514	201 - 236	2.9e-06	Armadillo/beta-catenin-like repeat
Arm	PF00514	377 - 414	7.2e-07	Armadillo/beta-catenin-like repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012483)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03070
fragaria_vesca	FvH4_6g15480 FvH4_6g15480 FvH4_6g15480
malus_domestica	MD12G1123100.v1.1
prunus_persica	Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1 Prupe.6G240100_v2.0.a1
pyrus_communis	pycom04g09800 pycom12g12180
rosa_chinensis	RchiOBHm_Chr3g0468961
rosa_laevigata	RLG00000024396
rosa_multiflora	Rmu_sc0001639.1_g000008
rosa_roxburghii	Rroxscaffold_6G00412420
rosa_rugosa	Rorug03G0097900.1
rosa_samantha	Rh3AG147600 Rh3BG170200 Rh3DG204900
rosa_wichuraiana	Rw3G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	444, 626, 780
AccBSI	CCGCTC	1 cut(s)	362
AccII	CGCG	1 cut(s)	542
AciI	CCGC	4 cut(s)	65, 73, 360, 540
AclWI	GGATC	1 cut(s)	167
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	834, 1386
AfaI	GTAC	1 cut(s)	1227
AfeI	AGCGCT	1 cut(s)	137
AfiI	CCNNNNNNNGG	6 cut(s)	54, 665, 712, 790, 1084, 1265
AgsI	TTSAA	5 cut(s)	253, 672, 755, 852, 893
AhlI	ACTAGT	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	1009, 1330
AloI	GAACNNNNNNTCC	2 cut(s)	1059, 1091
Alw21I	GWGCWC	3 cut(s)	539, 744, 1299
Alw26I	GTCTC	2 cut(s)	27, 70
AlwI	GGATC	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	137
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	341
AspLEI	GCGC	5 cut(s)	138, 305, 324, 544, 697
AspS9I	GGNCC	2 cut(s)	716, 1075
AsuHPI	GGTGA	7 cut(s)	173, 310, 599, 989, 1060, 1280, 1414
AsuII	TTCGAA	1 cut(s)	1207
AvaII	GGWCC	2 cut(s)	716, 1075
AxyI	CCTNAGG	1 cut(s)	474
BanI	GGYRCC	3 cut(s)	444, 626, 780
BanII	GRGCYC	2 cut(s)	539, 744
Bbv12I	GWGCWC	3 cut(s)	539, 744, 1299
BccI	CCATC	1 cut(s)	1265
BceAI	ACGGC	3 cut(s)	33, 95, 794
BciT130I	CCWGG	2 cut(s)	1011, 1332
BcoDI	GTCTC	2 cut(s)	27, 70
BcuI	ACTAGT	1 cut(s)	388
BfaI	CTAG	4 cut(s)	333, 389, 872, 1229
BfmI	CTRYAG	4 cut(s)	234, 258, 1125, 1385
BfoI	RGCGCY	4 cut(s)	139, 306, 325, 698
BlpI	GCTNAGC	1 cut(s)	552
Bme1390I	CCNGG	2 cut(s)	1011, 1332
Bme18I	GGWCC	2 cut(s)	716, 1075
BmgT120I	GGNCC	2 cut(s)	716, 1075
BmiI	GGNNCC	6 cut(s)	446, 628, 717, 718, 782, 1076
BmrFI	CCNGG	2 cut(s)	1011, 1332
BmsI	GCATC	4 cut(s)	346, 642, 757, 1313
BpmI	CTGGAG	2 cut(s)	399, 1313
Bpu10I	CCTNAGC	1 cut(s)	950
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	1207
BpuEI	CTTGAG	2 cut(s)	452, 1135
Bsa29I	ATCGAT	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	1009, 1010
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 665, 712, 790, 1084, 1265
Bse1I	ACTGG	2 cut(s)	864, 1404
Bse21I	CCTNAGG	1 cut(s)	474
Bse3DI	GCAATG	2 cut(s)	563, 1166
BseBI	CCWGG	2 cut(s)	1011, 1332
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	2 cut(s)	1009, 1010
BseGI	GGATG	3 cut(s)	772, 917, 1328
BseLI	CCNNNNNNNGG	6 cut(s)	54, 665, 712, 790, 1084, 1265
BseMI	GCAATG	2 cut(s)	563, 1166
BseMII	CTCAG	8 cut(s)	63, 331, 465, 543, 593, 635, 776, 855
BseNI	ACTGG	2 cut(s)	864, 1404
BseRI	GAGGAG	1 cut(s)	1075
BsgI	GTGCAG	3 cut(s)	249, 396, 413
Bsh1236I	CGCG	1 cut(s)	542
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	3 cut(s)	444, 626, 780
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	3 cut(s)	539, 744, 1299
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	3 cut(s)	81, 166, 729
BslI	CCNNNNNNNGG	6 cut(s)	54, 665, 712, 790, 1084, 1265
BsmAI	GTCTC	2 cut(s)	27, 70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	3 cut(s)	81, 166, 729
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	27
Bsp119I	TTCGAA	1 cut(s)	1207
Bsp1286I	GDGCHC	3 cut(s)	539, 744, 1299
Bsp143I	GATC	2 cut(s)	172, 335
Bsp1720I	GCTNAGC	1 cut(s)	552
BspACI	CCGC	4 cut(s)	65, 73, 360, 540
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	8 cut(s)	62, 330, 466, 544, 594, 634, 777, 854
BspDI	ATCGAT	1 cut(s)	198
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	6 cut(s)	446, 628, 717, 718, 782, 1076
BspMAI	CTGCAG	2 cut(s)	238, 262
BspPI	GGATC	1 cut(s)	167
BspQI	GCTCTTC	2 cut(s)	198, 591
BspT104I	TTCGAA	1 cut(s)	1207
BspT107I	GGYRCC	3 cut(s)	444, 626, 780
BspTNI	GGTCTC	1 cut(s)	27
BsrBI	CCGCTC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	563, 1166
BsrI	ACTGG	2 cut(s)	864, 1404
BssECI	CCNNGG	2 cut(s)	1009, 1010
BssMI	GATC	2 cut(s)	172, 335
Bst2UI	CCWGG	2 cut(s)	1011, 1332
Bst4CI	ACNGT	8 cut(s)	97, 167, 185, 330, 676, 926, 933, 1389
Bst6I	CTCTTC	6 cut(s)	25, 106, 198, 240, 591, 872
BstBI	TTCGAA	1 cut(s)	1207
BstC8I	GCNNGC	1 cut(s)	498
BstENI	CCTNNNNNAGG	3 cut(s)	710, 788, 1082
BstF5I	GGATG	3 cut(s)	772, 917, 1328
BstFNI	CGCG	1 cut(s)	542
BstH2I	RGCGCY	4 cut(s)	139, 306, 325, 698
BstHHI	GCGC	5 cut(s)	138, 305, 324, 544, 697
BstKTI	GATC	2 cut(s)	175, 338
BstMAI	GTCTC	2 cut(s)	27, 70
BstMBI	GATC	2 cut(s)	172, 335
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 368, 548, 692, 1004
BstNI	CCWGG	2 cut(s)	1011, 1332
BstSCI	CCNGG	2 cut(s)	1009, 1330
BstSFI	CTRYAG	4 cut(s)	234, 258, 1125, 1385
BstUI	CGCG	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	198
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	772, 917, 1328
BtsI	GCAGTG	4 cut(s)	246, 384, 401, 1167
BtsIMutI	CAGTG	8 cut(s)	102, 172, 190, 246, 384, 401, 1167, 1411
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	5 cut(s)	138, 305, 324, 544, 697
Cfr13I	GGNCC	2 cut(s)	716, 1075
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	1226
CspCI	CAANNNNNGTGG	2 cut(s)	78, 113
CviAII	CATG	4 cut(s)	564, 822, 995, 1393
CviQI	GTAC	1 cut(s)	1226
DpnI	GATC	2 cut(s)	174, 337
DpnII	GATC	2 cut(s)	172, 335
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	6 cut(s)	25, 106, 198, 240, 591, 872
EarI	CTCTTC	6 cut(s)	25, 106, 198, 240, 591, 872
Ecl136II	GAGCTC	2 cut(s)	537, 742
Eco24I	GRGCYC	2 cut(s)	539, 744
Eco31I	GGTCTC	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	716, 1075
Eco47III	AGCGCT	1 cut(s)	137
Eco53kI	GAGCTC	2 cut(s)	537, 742
Eco57I	CTGAAG	2 cut(s)	834, 1386
Eco81I	CCTNAGG	1 cut(s)	474
EcoICRI	GAGCTC	2 cut(s)	537, 742
EcoNI	CCTNNNNNAGG	3 cut(s)	710, 788, 1082
EcoO109I	RGGNCCY	2 cut(s)	716, 1075
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	1009, 1330
EcoT38I	GRGCYC	2 cut(s)	539, 744
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	4 cut(s)	567, 825, 998, 1396
FaqI	GGGAC	3 cut(s)	81, 166, 729
FatI	CATG	4 cut(s)	563, 821, 994, 1392
FauI	CCCGC	1 cut(s)	58
FauNDI	CATATG	1 cut(s)	1222
FokI	GGATG	3 cut(s)	779, 904, 1335
FriOI	GRGCYC	2 cut(s)	539, 744
FspBI	CTAG	4 cut(s)	333, 389, 872, 1229
GlaI	GCGC	5 cut(s)	137, 304, 323, 543, 696
GsuI	CTGGAG	2 cut(s)	399, 1313
HaeII	RGCGCY	4 cut(s)	139, 306, 325, 698
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	944
HhaI	GCGC	5 cut(s)	138, 305, 324, 544, 697
Hin1II	CATG	4 cut(s)	567, 825, 998, 1396
Hin6I	GCGC	5 cut(s)	136, 303, 322, 542, 695
HinP1I	GCGC	5 cut(s)	136, 303, 322, 542, 695
HindIII	AAGCTT	1 cut(s)	486
HinfI	GANTC	3 cut(s)	116, 980, 1288
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	7 cut(s)	173, 310, 599, 989, 1060, 1280, 1414
Hpy166II	GTNNAC	4 cut(s)	314, 929, 1067, 1409
Hpy188I	TCNGA	3 cut(s)	340, 575, 1287
Hpy188III	TCNNGA	5 cut(s)	179, 333, 416, 659, 1292
Hpy8I	GTNNAC	4 cut(s)	314, 929, 1067, 1409
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	6 cut(s)	584, 749, 899, 1190, 1259, 1337
HpyCH4III	ACNGT	8 cut(s)	97, 167, 185, 330, 676, 926, 933, 1389
HpyCH4IV	ACGT	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 368, 548, 692, 1004
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	4 cut(s)	567, 825, 998, 1396
HspAI	GCGC	5 cut(s)	136, 303, 322, 542, 695
KflI	GGGWCCC	1 cut(s)	716
Kzo9I	GATC	2 cut(s)	172, 335
LguI	GCTCTTC	2 cut(s)	198, 591
LmnI	GCTCC	2 cut(s)	542, 1294
LweI	GCATC	4 cut(s)	346, 642, 757, 1313
MaeI	CTAG	4 cut(s)	333, 389, 872, 1229
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	161, 426, 1028
MalI	GATC	2 cut(s)	174, 337
MbiI	CCGCTC	1 cut(s)	362
MboI	GATC	2 cut(s)	172, 335
MboII	GAAGA	6 cut(s)	42, 123, 215, 257, 608, 889
MhlI	GDGCHC	3 cut(s)	539, 744, 1299
MluCI	AATT	3 cut(s)	90, 341, 771
MmeI	TCCRAC	1 cut(s)	945
MseI	TTAA	1 cut(s)	366
MspA1I	CMGCKG	3 cut(s)	73, 263, 686
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	2 cut(s)	1011, 1332
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	2 cut(s)	1011, 1332
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	5 cut(s)	79, 368, 548, 692, 1004
NdeI	CATATG	1 cut(s)	1222
NdeII	GATC	2 cut(s)	172, 335
NlaIII	CATG	4 cut(s)	567, 825, 998, 1396
NlaIV	GGNNCC	6 cut(s)	446, 628, 717, 718, 782, 1076
NmuCI	GTSAC	1 cut(s)	161
NspV	TTCGAA	1 cut(s)	1207
PasI	CCCWGGG	1 cut(s)	1010
PciSI	GCTCTTC	2 cut(s)	198, 591
PctI	GAATGC	1 cut(s)	91
PfeI	GAWTC	3 cut(s)	116, 980, 1288
PpuMI	RGGWCCY	2 cut(s)	716, 1075
Psp124BI	GAGCTC	2 cut(s)	539, 744
Psp5II	RGGWCCY	2 cut(s)	716, 1075
Psp6I	CCWGG	2 cut(s)	1009, 1330
PspGI	CCWGG	2 cut(s)	1009, 1330
PspN4I	GGNNCC	6 cut(s)	446, 628, 717, 718, 782, 1076
PspPI	GGNCC	2 cut(s)	716, 1075
PspPPI	RGGWCCY	2 cut(s)	716, 1075
PstI	CTGCAG	2 cut(s)	238, 262
PvuII	CAGCTG	2 cut(s)	263, 686
RsaI	GTAC	1 cut(s)	1227
RsaNI	GTAC	1 cut(s)	1226
SacI	GAGCTC	2 cut(s)	539, 744
SapI	GCTCTTC	2 cut(s)	198, 591
SaqAI	TTAA	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	172, 335
Sau96I	GGNCC	2 cut(s)	716, 1075
ScrFI	CCNGG	2 cut(s)	1011, 1332
SduI	GDGCHC	3 cut(s)	539, 744, 1299
SfaNI	GCATC	4 cut(s)	346, 642, 757, 1313
SfcI	CTRYAG	4 cut(s)	234, 258, 1125, 1385
SfuI	TTCGAA	1 cut(s)	1207
SinI	GGWCC	2 cut(s)	716, 1075
SmlI	CTYRAG	2 cut(s)	431, 1150
SmoI	CTYRAG	2 cut(s)	431, 1150
SpeI	ACTAGT	1 cut(s)	388
Sse9I	AATT	3 cut(s)	90, 341, 771
SsiI	CCGC	4 cut(s)	65, 73, 360, 540
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	4 cut(s)	333, 389, 872, 1229
SstI	GAGCTC	2 cut(s)	539, 744
StyD4I	CCNGG	2 cut(s)	1009, 1330
TaaI	ACNGT	8 cut(s)	97, 167, 185, 330, 676, 926, 933, 1389
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	198, 1207
TasI	AATT	3 cut(s)	90, 341, 771
TatI	WGTACW	1 cut(s)	1225
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	3 cut(s)	116, 980, 1288
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	7 cut(s)	102, 172, 190, 246, 384, 401, 1167
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	216, 1327, 1381
TspRI	CASTG	7 cut(s)	102, 172, 190, 246, 384, 401, 1167
VpaK11BI	GGWCC	2 cut(s)	716, 1075
XagI	CCTNNNNNAGG	3 cut(s)	710, 788, 1082
XapI	RAATTY	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	332
XspI	CTAG	4 cut(s)	333, 389, 872, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.