AT5G03310

Indole-3-acetic acid-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017512
Physical Location & Seq
Reverse (-)
799224 .. 799706
483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03310.1

Sequence Viewer

Length: 345 bp
ATGATGAAGAAGAGCAAGCTGATCGCAAAGGCATGGAAGCAAATGTCAAGCAGAGTTGCCAAACACCGCGTCGCCACCGGAAATCCTAAGGATCAATATCATATACCACATGACGTACCAAAGGGACACCTTGTGGTGTACGTTGGTAAAGATGAGGAAACTTATAAGAGGTTCGTTATAAAGATCACGTTGCTTCACGATCCCATCTTCAGAGCTTTGCTTGATCAATCAAAAGATGAAGCTTACGACGATTTCACTTCCGGAGATTCCAAGCTTTGTATTGCTTGTGACGAAACTCTCTTTCTCGAGGTCCTCCGTTGCGCTTCTCCTCGTTATTCGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

114

Amino Acids

13.1

Weight (kDa)

8.98

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 10 - 106 8.8e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 165, 179
AccII CGCG 1 cut(s) 69
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 1 cut(s) 67
AclWI GGATC 2 cut(s) 99, 194
AcuI CTGAAG 1 cut(s) 193
AdeI CACNNNGTG 1 cut(s) 133
AfaI GTAC 2 cut(s) 117, 140
AluBI AGCT 4 cut(s) 19, 215, 242, 274
AluI AGCT 4 cut(s) 19, 215, 242, 274
AlwI GGATC 2 cut(s) 99, 194
Ama87I CYCGRG 1 cut(s) 305
Aor13HI TCCGGA 1 cut(s) 260
ArsI GACNNNNNNTTYG 2 cut(s) 54, 86
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 310
AxyI CCTNAGG 1 cut(s) 87
BccI CCATC 1 cut(s) 212
BcgI CGANNNNNNTGC 2 cut(s) 4, 38
BclI TGATCA 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 96
BsaWI WCCGGW 2 cut(s) 77, 260
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 96
BseAI TCCGGA 1 cut(s) 260
BseJI GATNNNNATC 1 cut(s) 96
BseRI GAGGAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 78, 261
BslFI GGGAC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 138
BsoBI CYCGRG 1 cut(s) 305
Bsp13I TCCGGA 1 cut(s) 260
Bsp143I GATC 5 cut(s) 21, 91, 183, 199, 223
BspACI CCGC 1 cut(s) 67
BspEI TCCGGA 1 cut(s) 260
BspFNI CGCG 1 cut(s) 69
BspPI GGATC 2 cut(s) 99, 194
BspQI GCTCTTC 1 cut(s) 5
BssMI GATC 5 cut(s) 21, 91, 183, 199, 223
Bst6I CTCTTC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 69
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 5 cut(s) 24, 94, 186, 202, 226
BstMBI GATC 5 cut(s) 21, 91, 183, 199, 223
BstUI CGCG 1 cut(s) 69
Bsu36I CCTNAGG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 310
CseI GACGC 1 cut(s) 58
Csp6I GTAC 2 cut(s) 116, 139
CviAII CATG 2 cut(s) 33, 110
CviJI RGCY 4 cut(s) 19, 215, 242, 274
CviKI_1 RGCY 4 cut(s) 19, 215, 242, 274
CviQI GTAC 2 cut(s) 116, 139
DdeI CTNAG 1 cut(s) 87
DpnI GATC 5 cut(s) 23, 93, 185, 201, 225
DpnII GATC 5 cut(s) 21, 91, 183, 199, 223
DraIII CACNNNGTG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 193
Eco81I CCTNAGG 1 cut(s) 87
Eco88I CYCGRG 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 310
FaeI CATG 2 cut(s) 36, 113
FaiI YATR 7 cut(s) 34, 102, 104, 111, 165, 179, 343
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 32, 109
FbaI TGATCA 1 cut(s) 223
GlaI GCGC 1 cut(s) 322
HapII CCGG 2 cut(s) 78, 261
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 36, 113
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HindIII AAGCTT 2 cut(s) 240, 272
HinfI GANTC 1 cut(s) 266
HpaII CCGG 2 cut(s) 78, 261
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 197, 261, 305
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 74, 251
HpyCH4IV ACGT 3 cut(s) 114, 141, 188
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 3 cut(s) 114, 141, 188
Hsp92II CATG 2 cut(s) 36, 113
HspAI GCGC 1 cut(s) 321
Kpn2I TCCGGA 1 cut(s) 260
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 5 cut(s) 21, 91, 183, 199, 223
LguI GCTCTTC 1 cut(s) 5
LpnPI CCDG 2 cut(s) 91, 274
MaeII ACGT 3 cut(s) 114, 141, 188
MaeIII GTNAC 1 cut(s) 287
MalI GATC 5 cut(s) 23, 93, 185, 201, 225
MboI GATC 5 cut(s) 21, 91, 183, 199, 223
MboII GAAGA 3 cut(s) 19, 22, 199
MnlI CCTC 5 cut(s) 148, 162, 301, 323, 339
MroI TCCGGA 1 cut(s) 260
MspI CCGG 2 cut(s) 78, 261
MvnI CGCG 1 cut(s) 69
NdeII GATC 5 cut(s) 21, 91, 183, 199, 223
NlaIII CATG 2 cut(s) 36, 113
NmuCI GTSAC 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 5
PfeI GAWTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 310
PsiI TTATAA 2 cut(s) 165, 179
Psp5II RGGWCCY 1 cut(s) 310
PspPI GGNCC 1 cut(s) 310
PspPPI RGGWCCY 1 cut(s) 310
RsaI GTAC 2 cut(s) 117, 140
RsaNI GTAC 2 cut(s) 116, 139
SapI GCTCTTC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 21, 91, 183, 199, 223
Sau96I GGNCC 1 cut(s) 310
Sfr274I CTCGAG 1 cut(s) 305
SinI GGWCC 1 cut(s) 310
SlaI CTCGAG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SsiI CCGC 1 cut(s) 67
TaiI ACGT 3 cut(s) 117, 144, 191
TaqI TCGA 1 cut(s) 306
TfiI GAWTC 1 cut(s) 266
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 20, 252
TspGWI ACGGA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 310
XhoI CTCGAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.