pycom07g16700

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017512
Physical Location & Seq
Forward (+)
19129960 .. 19130343
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g16700.1

Sequence Viewer

Length: 384 bp
ATGATGCTATTCGACGCTAAGTTCCTCATCAAACAATTCTTTCGCAGATGCAGGAAACTTGGTGGTACAGTCCTAAGGCGTGCAATCCGGGGTCACATTAGCAATGCGAAGATGTGGTTCCGCCGTCATGAAGAGGACTACTGTGTACCCAAAAATGTCCAAAGAGGCCACCTTGTGGTGTATGTTGGTGAAGACTGCAAGAGATTTATCATCAAGGTTACATTACTCAGCCACCCTTTGTTCCAGCAATTGCTTGATCTCGCTGAAGAAGTTTTTCAGTTTGCAGCCAACACGAAACTCTGGATTCCTTGCAACGAATACATTTTCATCGACGTTCTTCATTGCATCAGTTATGAACTAGATCAAGGGCTTCATCACATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

128

Amino Acids

15.14

Weight (kDa)

9.08

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 41 - 115 4.2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 175
AciI CCGC 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 2 cut(s) 67, 147
AfiI CCNNNNNNNGG 1 cut(s) 175
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 284
Asp700I GAANNNNTTC 1 cut(s) 273
AsuC2I CCSGG 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 296
BceAI ACGGC 1 cut(s) 108
BcnI CCSGG 1 cut(s) 89
BfaI CTAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 2 cut(s) 38, 354
BpiI GAAGAC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse21I CCTNAGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 109, 340
BseDI CCNNGG 1 cut(s) 88
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 2 cut(s) 109, 340
BseMII CTCAG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 296
BshFI GGCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 175
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 256, 361
BspACI CCGC 1 cut(s) 121
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 109, 340
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 256, 361
Bst4CI ACNGT 2 cut(s) 70, 143
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 18, 74, 227
BstKTI GATC 2 cut(s) 259, 364
BstMBI GATC 2 cut(s) 256, 361
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 296
BstV2I GAAGAC 1 cut(s) 198
Bsu36I CCTNAGG 1 cut(s) 74
BsuRI GGCC 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 81
CciI TCATGA 1 cut(s) 127
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 66, 146
CviAII CATG 1 cut(s) 128
CviJI RGCY 4 cut(s) 168, 231, 287, 370
CviKI_1 RGCY 4 cut(s) 168, 231, 287, 370
CviQI GTAC 2 cut(s) 66, 146
DdeI CTNAG 3 cut(s) 18, 74, 227
DpnI GATC 2 cut(s) 258, 363
DpnII GATC 2 cut(s) 256, 361
DraIII CACNNNGTG 1 cut(s) 175
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 1 cut(s) 110
Eco57I CTGAAG 1 cut(s) 285
Eco81I CCTNAGG 1 cut(s) 74
FaeI CATG 1 cut(s) 131
FaiI YATR 3 cut(s) 129, 183, 354
FatI CATG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 285
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 304
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 128, 301
Hpy8I GTNNAC 1 cut(s) 146
Hpy99I CGWCG 2 cut(s) 17, 335
HpyCH4III ACNGT 2 cut(s) 70, 143
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 6 cut(s) 51, 83, 198, 284, 312, 345
HpyF3I CTNAG 3 cut(s) 18, 74, 227
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 256, 361
LpnPI CCDG 4 cut(s) 37, 101, 257, 286
Lsp1109I GCAGC 1 cut(s) 296
LweI GCATC 2 cut(s) 38, 354
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 2 cut(s) 92, 217
MalI GATC 2 cut(s) 258, 363
MboI GATC 2 cut(s) 256, 361
MboII GAAGA 5 cut(s) 121, 143, 203, 278, 329
MfeI CAATTG 1 cut(s) 248
MluCI AATT 2 cut(s) 35, 248
MnlI CCTC 3 cut(s) 35, 127, 158
MroXI GAANNNNTTC 1 cut(s) 273
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 1 cut(s) 248
NciI CCSGG 1 cut(s) 89
NdeII GATC 2 cut(s) 256, 361
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 92
PagI TCATGA 1 cut(s) 127
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 175
PkrI GCNGC 1 cut(s) 286
PspN4I GGNNCC 1 cut(s) 119
RsaI GTAC 2 cut(s) 67, 147
RsaNI GTAC 2 cut(s) 66, 146
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 256, 361
ScrFI CCNGG 1 cut(s) 89
SetI ASST 3 cut(s) 174, 219, 336
SfaNI GCATC 2 cut(s) 38, 354
Sse9I AATT 2 cut(s) 35, 248
SsiI CCGC 1 cut(s) 121
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 70, 143
TaiI ACGT 1 cut(s) 336
TaqI TCGA 2 cut(s) 12, 330
TasI AATT 2 cut(s) 35, 248
TfiI GAWTC 1 cut(s) 304
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 5 cut(s) 144, 316, 329, 362, 369
Van91I CCANNNNNTGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.