FvH4_7g19120

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0017512
Physical Location & Seq
Forward (+)
15854632 .. 15855063
432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19120.t1

Sequence Viewer

Length: 432 bp
ATGTTGATGATGTTGATCATGAAGAGCAAGTCTCTCAGAGAATGCTATGGTAGGTGCAGAAAAGCTGGTGCTAGAGTACTAAAGTATGTATCTTGGGATCATGTTTTCAATAGAGATATTAAGTGGTTCTGTTTGCATTCTGAAGAGGACAACTGTAGTATCCCCAAAGATGTCCCGAAAGGTCACCTAGTGGTTTATGTTGGTGAAGAGTGCAGGAGATTTGTGATCAAGGTTACCTTACTCAACCACCCTTTGTTCCGGGCATTGCTTGCTCAGGCTGAGGAAGTGTTTCAGTTTGCCACCAACTCATCAAAACTCTGCATTCCTTGCAGCGAGTACATGTTCCTCAGTGTTCTTCAGTGCATTAGCTCTGAAGTGCTAGATCGAAGGTGTTCGTTTTCTATGAGGCGCTTGTTCTTCAGAGGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

144

Amino Acids

16.77

Weight (kDa)

9.16

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 47 - 122 1.7e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 105
AcuI CTGAAG 4 cut(s) 162, 341, 393, 403
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 2 cut(s) 78, 338
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 1 cut(s) 109
AluBI AGCT 2 cut(s) 65, 369
AluI AGCT 2 cut(s) 65, 369
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 330
Asp700I GAANNNNTTC 2 cut(s) 288, 391
AspLEI GCGC 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 2 cut(s) 176, 215
BaeI ACNNNNGTAYC 2 cut(s) 142, 175
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 342
BciVI GTATCC 1 cut(s) 170
BclI TGATCA 2 cut(s) 15, 225
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 36
BfaI CTAG 3 cut(s) 72, 188, 380
BfmI CTRYAG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 412
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 16, 48
Bpu10I CCTNAGC 2 cut(s) 273, 279
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 263
Bse8I GATNNNNATC 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 14
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 4 cut(s) 49, 270, 287, 361
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 2 cut(s) 76, 232
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 3 cut(s) 47, 136, 321
Bsp143I GATC 4 cut(s) 15, 97, 225, 382
BspCNI CTCAG 4 cut(s) 48, 271, 286, 360
BspHI TCATGA 1 cut(s) 18
BspPI GGATC 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 263
BssMI GATC 4 cut(s) 15, 97, 225, 382
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 3 cut(s) 17, 138, 201
BstAPI GCANNNNNTGC 2 cut(s) 269, 327
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 4 cut(s) 35, 273, 279, 347
BstEII GGTNACC 2 cut(s) 182, 232
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 4 cut(s) 18, 100, 228, 385
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 4 cut(s) 15, 97, 225, 382
BstMWI GCNNNNNNNGC 2 cut(s) 269, 327
BstNSI RCATGY 1 cut(s) 343
BstPI GGTNACC 2 cut(s) 182, 232
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 342
BsuI GTATCC 1 cut(s) 170
BtsIMutI CAGTG 2 cut(s) 355, 365
Cac8I GCNNGC 1 cut(s) 270
CciI TCATGA 1 cut(s) 18
CfoI GCGC 1 cut(s) 411
Csp6I GTAC 2 cut(s) 77, 337
CviAII CATG 3 cut(s) 19, 101, 340
CviJI RGCY 3 cut(s) 65, 278, 369
CviKI_1 RGCY 3 cut(s) 65, 278, 369
CviQI GTAC 2 cut(s) 77, 337
DdeI CTNAG 4 cut(s) 35, 273, 279, 347
DpnI GATC 4 cut(s) 17, 99, 227, 384
DpnII GATC 4 cut(s) 15, 97, 225, 382
DraIII CACNNNGTG 1 cut(s) 190
Eam1104I CTCTTC 3 cut(s) 17, 138, 201
EarI CTCTTC 3 cut(s) 17, 138, 201
Eco57I CTGAAG 4 cut(s) 162, 341, 393, 403
Eco91I GGTNACC 2 cut(s) 182, 232
EcoO65I GGTNACC 2 cut(s) 182, 232
FaeI CATG 3 cut(s) 22, 104, 343
FaiI YATR 9 cut(s) 20, 48, 87, 102, 198, 341, 404, 428, 430
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 18, 100, 339
FbaI TGATCA 2 cut(s) 15, 225
Fnu4HI GCNGC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 3 cut(s) 72, 188, 380
GlaI GCGC 1 cut(s) 410
GluI GCNGC 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 412
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 411
Hin1II CATG 3 cut(s) 22, 104, 343
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HpaII CCGG 1 cut(s) 259
HphI GGTGA 2 cut(s) 176, 215
Hpy188I TCNGA 4 cut(s) 38, 142, 373, 422
Hpy188III TCNNGA 2 cut(s) 19, 175
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 6 cut(s) 57, 136, 213, 321, 330, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 327
HpyF3I CTNAG 4 cut(s) 35, 273, 279, 347
Hsp92II CATG 3 cut(s) 22, 104, 343
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 2 cut(s) 15, 225
Kzo9I GATC 4 cut(s) 15, 97, 225, 382
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 4 cut(s) 51, 199, 260, 272
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 3 cut(s) 72, 188, 380
MaeIII GTNAC 2 cut(s) 182, 232
MalI GATC 4 cut(s) 17, 99, 227, 384
MboI GATC 4 cut(s) 15, 97, 225, 382
MboII GAAGA 5 cut(s) 34, 155, 218, 347, 409
MnlI CCTC 5 cut(s) 139, 274, 356, 399, 416
MroXI GAANNNNTTC 2 cut(s) 288, 391
MseI TTAA 1 cut(s) 120
MspI CCGG 1 cut(s) 259
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 3 cut(s) 47, 136, 321
MwoI GCNNNNNNNGC 2 cut(s) 269, 327
NciI CCSGG 1 cut(s) 260
NdeII GATC 4 cut(s) 15, 97, 225, 382
NlaIII CATG 3 cut(s) 22, 104, 343
NmuCI GTSAC 1 cut(s) 182
NspI RCATGY 1 cut(s) 343
PagI TCATGA 1 cut(s) 18
PciI ACATGT 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 3 cut(s) 47, 136, 321
PdmI GAANNNNTTC 2 cut(s) 288, 391
PkrI GCNGC 1 cut(s) 332
PscI ACATGT 1 cut(s) 339
PspEI GGTNACC 2 cut(s) 182, 232
RsaI GTAC 2 cut(s) 78, 338
RsaNI GTAC 2 cut(s) 77, 337
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 4 cut(s) 15, 97, 225, 382
ScaI AGTACT 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 260
SetI ASST 8 cut(s) 56, 67, 184, 189, 234, 239, 371, 392
SfcI CTRYAG 1 cut(s) 154
SspMI CTAG 3 cut(s) 72, 188, 380
StyD4I CCNGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 385
TatI WGTACW 2 cut(s) 76, 336
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 2 cut(s) 355, 365
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 2 cut(s) 355, 365
XceI RCATGY 1 cut(s) 343
XmnI GAANNNNTTC 2 cut(s) 288, 391
XspI CTAG 3 cut(s) 72, 188, 380
ZrmI AGTACT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.