MD07G1172500.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0017512
Physical Location & Seq
Forward (+)
25001027 .. 25001422
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1172500.v1.1.491

Sequence Viewer

Length: 396 bp
ATGAACATCGATATGATGCTTTTTGAGGCTAAGTTCCTCATCAAACAATTCTTTCGCAGATGCAGGAACCTTGGTGGTACAGTCCTAAGGCGTAAAATCCGGGGTCACTTTAGCAATGCGAAAATGTGGTTCCCCCGTCATGAAGAGGACTACTATGTACCCAAAGATGTCCCAAGAGGCCACCTTGTGGTGTATGTTGGTGAAGACTGCAAGAAATTTATCATCAAGGTTACATTACTCAGCCACCCTCTGTTCCAGGAATTGCTTGATCTCGCTGAAGAAGTTTTTCAGCTTGCAACCAACACGAAACTCTGGATTCCTTGCAACGAATACATTTTCATCAGCGTTCTTCGTTGCATCAGTTATGAACTAGATCTAGGGTTTCATTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

132

Amino Acids

15.68

Weight (kDa)

8.69

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 39 - 120 4.1e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 297
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 2 cut(s) 79, 159
AfiI CCNNNNNNNGG 1 cut(s) 187
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 210
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 2 cut(s) 371, 377
BglII AGATCT 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 101, 257
BmiI GGNNCC 2 cut(s) 68, 131
BmrFI CCNGG 2 cut(s) 101, 257
BmsI GCATC 3 cut(s) 6, 50, 366
BpiI GAAGAC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse21I CCTNAGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 121
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 70, 100
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 253
BshFI GGCC 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 9
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 268, 373
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 252
BspDI ATCGAT 1 cut(s) 9
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 68, 131
BsrDI GCAATG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 70, 100
BssMI GATC 2 cut(s) 268, 373
BssT1I CCWWGG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 3 cut(s) 30, 86, 239
BstKTI GATC 2 cut(s) 271, 376
BstMBI GATC 2 cut(s) 268, 373
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 99, 255
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 9
Bsu36I CCTNAGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 294
CciI TCATGA 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 78, 158
CviAII CATG 1 cut(s) 140
CviJI RGCY 4 cut(s) 29, 180, 243, 292
CviKI_1 RGCY 4 cut(s) 29, 180, 243, 292
CviQI GTAC 2 cut(s) 78, 158
DdeI CTNAG 3 cut(s) 30, 86, 239
DpnI GATC 2 cut(s) 270, 375
DpnII GATC 2 cut(s) 268, 373
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 297
Eco81I CCTNAGG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 1 cut(s) 143
FaiI YATR 5 cut(s) 14, 141, 156, 195, 366
FaqI GGGAC 1 cut(s) 155
FatI CATG 1 cut(s) 139
FspBI CTAG 2 cut(s) 371, 377
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 100
Hin1II CATG 1 cut(s) 143
HinfI GANTC 1 cut(s) 316
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 212
Hpy188III TCNNGA 2 cut(s) 140, 313
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 5 cut(s) 63, 210, 296, 324, 357
HpyF3I CTNAG 3 cut(s) 30, 86, 239
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 2 cut(s) 268, 373
LpnPI CCDG 5 cut(s) 49, 113, 242, 269, 298
LweI GCATC 3 cut(s) 6, 50, 366
MaeI CTAG 2 cut(s) 371, 377
MaeIII GTNAC 2 cut(s) 104, 229
MalI GATC 2 cut(s) 270, 375
MboI GATC 2 cut(s) 268, 373
MboII GAAGA 4 cut(s) 155, 215, 290, 341
MflI RGATCY 1 cut(s) 373
MluCI AATT 3 cut(s) 47, 215, 260
MnlI CCTC 5 cut(s) 19, 47, 139, 170, 258
MroXI GAANNNNTTC 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 101, 257
MvaI CCWGG 1 cut(s) 257
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 268, 373
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 2 cut(s) 68, 131
NmuCI GTSAC 1 cut(s) 104
PagI TCATGA 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 2 cut(s) 68, 131
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 2 cut(s) 79, 159
RsaNI GTAC 2 cut(s) 78, 158
RseI CAYNNNNRTG 1 cut(s) 11
Sau3AI GATC 2 cut(s) 268, 373
ScrFI CCNGG 2 cut(s) 101, 257
SetI ASST 4 cut(s) 72, 186, 231, 294
SfaNI GCATC 3 cut(s) 6, 50, 366
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 3 cut(s) 47, 215, 260
SspMI CTAG 2 cut(s) 371, 377
StyD4I CCNGG 2 cut(s) 99, 255
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 1 cut(s) 9
TasI AATT 3 cut(s) 47, 215, 260
TfiI GAWTC 1 cut(s) 316
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 5 cut(s) 17, 156, 328, 374, 381
Van91I CCANNNNNTGG 1 cut(s) 187
XapI RAATTY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 371, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.