MD01G1106100.v1.1

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017512
Physical Location & Seq
Forward (+)
21931954 .. 21932349
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1106100.v1.1.491

Sequence Viewer

Length: 396 bp
ATGAACATTTATATGATGCTTTTGGAGGCTAGGTTGCTCATCAAACAATCCTTTCGCAGATGCAGGAAACTTGGCGGTACACTCCTAAAGCGTGCAATCCGGGGTCACATTGGCAGTCAGAACATGTGGTTCCGCCTTCATGAAGAGGACTACAATATACCCAAGGATGTCCCGAAAGGCCACCTTGTGGTGTATGTTGGTGAAGACCGCAAGAGATTTGTCGTCAAGGTTACCTTACTCAGCCACCCTTTGTTCCAAGAATTGCTTGATCTTGCCGAAGAAGCTTTTCATTTTGCTGCAAACTCGAAACTCTGGATTCCTTGCAACGAATACATTTTCCTCAGCGTTATTCGTTGCATCGGTTATGAACTAGATCGAGGGCTTCCTTATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

132

Amino Acids

15.44

Weight (kDa)

9.24

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 47 - 120 9.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 187
AciI CCGC 3 cut(s) 75, 133, 208
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 123
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 296
Asp700I GAANNNNTTC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 2 cut(s) 30, 371
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
Bme1390I CCNGG 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 3 cut(s) 6, 50, 366
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 341
BpuMI CCSGG 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 100, 162
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseDI CCNNGG 2 cut(s) 100, 162
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 2 cut(s) 253, 355
BseXI GCAGC 1 cut(s) 283
BshFI GGCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 268, 373
BspACI CCGC 3 cut(s) 75, 133, 208
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 252, 354
BspHI TCATGA 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 100, 162
BssMI GATC 2 cut(s) 268, 373
BssT1I CCWWGG 1 cut(s) 162
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 239, 341
BstEII GGTNACC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 2 cut(s) 271, 376
BstMBI GATC 2 cut(s) 268, 373
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 127
BstPI GGTNACC 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 180
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 93
CciI TCATGA 1 cut(s) 139
Csp6I GTAC 1 cut(s) 78
CviAII CATG 2 cut(s) 124, 140
CviJI RGCY 5 cut(s) 29, 180, 243, 284, 382
CviKI_1 RGCY 5 cut(s) 29, 180, 243, 284, 382
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 239, 341
DpnI GATC 2 cut(s) 270, 375
DpnII GATC 2 cut(s) 268, 373
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 162
Eco91I GGTNACC 1 cut(s) 229
EcoO65I GGTNACC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 127, 143
FaiI YATR 7 cut(s) 12, 14, 125, 141, 158, 195, 366
FalI AAGNNNNNCTT 6 cut(s) 168, 200, 218, 250, 249, 281
FaqI GGGAC 1 cut(s) 155
FatI CATG 2 cut(s) 123, 139
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 2 cut(s) 30, 371
GluI GCNGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 127, 143
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 316
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 3 cut(s) 140, 172, 313
Hpy8I GTNNAC 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 5 cut(s) 63, 95, 299, 324, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 239, 341
Hsp92II CATG 2 cut(s) 127, 143
Kzo9I GATC 2 cut(s) 268, 373
LpnPI CCDG 3 cut(s) 49, 113, 298
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 3 cut(s) 6, 50, 366
MaeI CTAG 2 cut(s) 30, 371
MaeIII GTNAC 2 cut(s) 104, 229
MalI GATC 2 cut(s) 270, 375
MboI GATC 2 cut(s) 268, 373
MboII GAAGA 3 cut(s) 155, 215, 290
MluCI AATT 1 cut(s) 260
MnlI CCTC 4 cut(s) 19, 139, 350, 371
MroXI GAANNNNTTC 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 281
NciI CCSGG 1 cut(s) 101
NdeII GATC 2 cut(s) 268, 373
NlaIII CATG 2 cut(s) 127, 143
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 127
PagI TCATGA 1 cut(s) 139
PciI ACATGT 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 316
PflMI CCANNNNNTGG 1 cut(s) 187
PkrI GCNGC 1 cut(s) 298
PscI ACATGT 1 cut(s) 123
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 131
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 1 cut(s) 11
SatI GCNGC 1 cut(s) 297
Sau3AI GATC 2 cut(s) 268, 373
ScrFI CCNGG 1 cut(s) 101
SetI ASST 5 cut(s) 35, 186, 231, 236, 286
SfaNI GCATC 3 cut(s) 6, 50, 366
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 1 cut(s) 260
SsiI CCGC 3 cut(s) 75, 133, 208
SspMI CTAG 2 cut(s) 30, 371
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 162
TaqI TCGA 2 cut(s) 305, 376
TasI AATT 1 cut(s) 260
TfiI GAWTC 1 cut(s) 316
TseFI GTSAC 1 cut(s) 104
TseI GCWGC 1 cut(s) 296
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 5 cut(s) 17, 128, 156, 278, 381
Van91I CCANNNNNTGG 1 cut(s) 187
XceI RCATGY 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 2 cut(s) 30, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.