Rw0G002930

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00094
OG0017512
Physical Location & Seq
Forward (+)
7680 .. 8120
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002930.1

Sequence Viewer

Length: 441 bp
ATGAAGAGAAAGTTTTTCAAAGAATGCTTTGGTAGGTGCAGAAAAGCTGGTGCTAGAGCACTAGAGTCTGTATCTTGGGATCATGTTTTCAATAGAGATATTAAGTGGTTATGTTTGCATTCTGAAGAGGACAATTATAATATCCCCAAAGATGTCCCAAAAGGTCACCTAGTGGTCTATGTTGGTGAAGAATGCAGGAGATTTGTGATCAAGATTACCTTACTCAGCCATCCTTTGTTCCAGGCATTGCTGGATCAGGCTGAGGAAGTGTTTCAGTTTGCCACCAACTCATCAAAACTCTGCATTCCTTGCAGCGAGTACTTGTTCCTCAGCGTTCTTCAGTGCATTAGCTCTGAAGTCCTAGATCGAAGGTGTTTGTTCTCTATGAGACGCTTGTTTTTCAGAGAGATAAAATATGAGAGAAGATCTGCATCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

146

Amino Acids

17.28

Weight (kDa)

8.96

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 40 - 116 9.4e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 138
AclWI GGATC 2 cut(s) 87, 261
AcuI CTGAAG 3 cut(s) 144, 323, 375
AdeI CACNNNGTG 1 cut(s) 172
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 2 cut(s) 19, 91
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 47, 351
AluI AGCT 2 cut(s) 47, 351
Alw21I GWGCWC 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 87, 261
ApeKI GCWGC 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 158, 197
Bbv12I GWGCWC 1 cut(s) 61
BbvCI CCTCAGC 2 cut(s) 261, 329
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 237
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 4 cut(s) 54, 62, 170, 362
BglII AGATCT 1 cut(s) 425
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 242
Bpu10I CCTNAGC 2 cut(s) 261, 329
BsaBI GATNNNNATC 1 cut(s) 430
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 430
BseBI CCWGG 1 cut(s) 242
BseGI GGATG 2 cut(s) 229, 431
BseJI GATNNNNATC 1 cut(s) 430
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 3 cut(s) 238, 252, 343
BseXI GCAGC 1 cut(s) 324
BsgI GTGCAG 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 61
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 382
BsmBI CGTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 140
BsmI GAATGC 4 cut(s) 29, 118, 197, 303
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 5 cut(s) 79, 207, 253, 364, 425
BspCNI CTCAG 3 cut(s) 237, 253, 342
BspPI GGATC 2 cut(s) 87, 261
BsrDI GCAATG 1 cut(s) 245
BssMI GATC 5 cut(s) 79, 207, 253, 364, 425
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 1 cut(s) 120
BstAPI GCANNNNNTGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 224, 261, 329
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 229, 431
BstKTI GATC 5 cut(s) 82, 210, 256, 367, 428
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 79, 207, 253, 364, 425
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstNI CCWGG 1 cut(s) 242
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 324
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BtsCI GGATG 2 cut(s) 229, 431
BtsIMutI CAGTG 1 cut(s) 347
CseI GACGC 1 cut(s) 399
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 47, 228, 260, 351
CviKI_1 RGCY 4 cut(s) 47, 228, 260, 351
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 3 cut(s) 224, 261, 329
DpnI GATC 5 cut(s) 81, 209, 255, 366, 427
DpnII GATC 5 cut(s) 79, 207, 253, 364, 425
DraIII CACNNNGTG 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 144, 323, 375
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 382
FaeI CATG 1 cut(s) 86
FaiI YATR 8 cut(s) 84, 112, 138, 180, 386, 417, 437, 439
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 2 cut(s) 216, 418
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 4 cut(s) 54, 62, 170, 362
GluI GCNGC 1 cut(s) 313
HgaI GACGC 1 cut(s) 399
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 65
HphI GGTGA 2 cut(s) 158, 197
Hpy188I TCNGA 3 cut(s) 124, 355, 404
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 363
HpyCH4V TGCA 7 cut(s) 39, 118, 195, 303, 312, 345, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 3 cut(s) 224, 261, 329
Hsp92II CATG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 5 cut(s) 79, 207, 253, 364, 425
LpnPI CCDG 6 cut(s) 33, 181, 227, 236, 242, 254
Lsp1109I GCAGC 1 cut(s) 324
MaeI CTAG 4 cut(s) 54, 62, 170, 362
MaeIII GTNAC 1 cut(s) 164
MalI GATC 5 cut(s) 81, 209, 255, 366, 427
MboI GATC 5 cut(s) 79, 207, 253, 364, 425
MboII GAAGA 5 cut(s) 16, 137, 200, 329, 435
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 3 cut(s) 121, 256, 338
MroXI GAANNNNTTC 1 cut(s) 270
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 242
Mva1269I GAATGC 4 cut(s) 29, 118, 197, 303
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 1 cut(s) 309
NdeII GATC 5 cut(s) 79, 207, 253, 364, 425
NlaIII CATG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 164
PctI GAATGC 4 cut(s) 29, 118, 197, 303
PdmI GAANNNNTTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PsiI TTATAA 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 425
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 5 cut(s) 79, 207, 253, 364, 425
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 61
SetI ASST 7 cut(s) 38, 49, 166, 171, 221, 353, 374
Sse9I AATT 1 cut(s) 133
SspMI CTAG 4 cut(s) 54, 62, 170, 362
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 1 cut(s) 367
TasI AATT 1 cut(s) 133
TatI WGTACW 1 cut(s) 318
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 347
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 312
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 4 cut(s) 54, 62, 170, 362
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.