Rroxscaffold_4G00293570

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017512
Physical Location & Seq
Reverse (-)
13799984 .. 13800442
459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293570.1

Sequence Viewer

Length: 459 bp
ATGTTGATGATGTTGATCATGAAGAGCAAGTTTTTCAAAGAATGCTTTGGTAGGTGCAGAAAAGCTGGTGCTAGAGCACTAGAGTTTGTATCTTGGGATCATGTTTTCAATAGAGATATGAAGTGGTTCTGTTTGCATTCTGAAGAGGACAATTATAATATCCCCAAAGATGTCCCAAAAGGTCACCTAGTGGTCTATGTTGGTGAAGAATGCAAGAGATTTGTGATCAAGATTACCTTACTCAGCCATCCTTTGTTCCAGGCATTGCTGGATCAGGCTGAGGAAGTGTTTCAGTTTGCCACCAACTCATCAAAACTCTGCATTCCTTGCAGCGAGTACTTGTTCCTCAGCGTTCTTCAGTGCATTAGCTCTGAAGTCCTAGATCAAAGGTGTTCGTTCTCCATGAGACCCTTGTTTTTCAGAGAGATAAGATATGAGAGAAGATCTGCATCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

152

Amino Acids

17.94

Weight (kDa)

8.43

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 46 - 122 1.3e-23 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03310
fragaria_vesca FvH4_7g19120
malus_domestica MD01G1106100.v1.1 MD07G1172500.v1.1
prunus_persica Prupe.2G211600_v2.0.a1
pyrus_communis pycom07g16700
rosa_chinensis RchiOBHm_Chr1g0362991
rosa_laevigata RLG00000027604
rosa_multiflora Rmu_sc0000174.1_g000005
rosa_roxburghii Rroxscaffold_4G00293570
rosa_wichuraiana Rw0G002930 Rw1G027680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AclWI GGATC 2 cut(s) 105, 279
AcuI CTGAAG 3 cut(s) 162, 341, 393
AdeI CACNNNGTG 1 cut(s) 190
AfaI GTAC 1 cut(s) 338
AgsI TTSAA 2 cut(s) 37, 109
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 2 cut(s) 65, 369
AluI AGCT 2 cut(s) 65, 369
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 400
AlwI GGATC 2 cut(s) 105, 279
ApeKI GCWGC 1 cut(s) 330
Asp700I GAANNNNTTC 2 cut(s) 125, 288
AsuHPI GGTGA 2 cut(s) 176, 215
Bbv12I GWGCWC 1 cut(s) 79
BbvCI CCTCAGC 2 cut(s) 279, 347
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 2 cut(s) 15, 225
BcoDI GTCTC 1 cut(s) 400
BfaI CTAG 4 cut(s) 72, 80, 188, 380
BglII AGATCT 1 cut(s) 443
BisI GCNGC 1 cut(s) 331
BlsI GCNGC 1 cut(s) 332
BmcAI AGTACT 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 260
Bpu10I CCTNAGC 2 cut(s) 279, 347
BsaBI GATNNNNATC 2 cut(s) 14, 448
BsaI GGTCTC 1 cut(s) 400
Bse3DI GCAATG 1 cut(s) 263
Bse8I GATNNNNATC 2 cut(s) 14, 448
BseBI CCWGG 1 cut(s) 260
BseGI GGATG 2 cut(s) 247, 449
BseJI GATNNNNATC 2 cut(s) 14, 448
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 3 cut(s) 256, 270, 361
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 400
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 4 cut(s) 47, 136, 215, 321
Bso31I GGTCTC 1 cut(s) 400
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 6 cut(s) 15, 97, 225, 271, 382, 443
BspCNI CTCAG 3 cut(s) 255, 271, 360
BspHI TCATGA 1 cut(s) 18
BspPI GGATC 2 cut(s) 105, 279
BspQI GCTCTTC 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 263
BssMI GATC 6 cut(s) 15, 97, 225, 271, 382, 443
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 17, 138
BstAPI GCANNNNNTGC 1 cut(s) 327
BstDEI CTNAG 3 cut(s) 242, 279, 347
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 247, 449
BstKTI GATC 6 cut(s) 18, 100, 228, 274, 385, 446
BstMAI GTCTC 1 cut(s) 400
BstMBI GATC 6 cut(s) 15, 97, 225, 271, 382, 443
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BtsCI GGATG 2 cut(s) 247, 449
BtsIMutI CAGTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 18
Csp6I GTAC 1 cut(s) 337
CviAII CATG 3 cut(s) 19, 101, 403
CviJI RGCY 4 cut(s) 65, 246, 278, 369
CviKI_1 RGCY 4 cut(s) 65, 246, 278, 369
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 242, 279, 347
DpnI GATC 6 cut(s) 17, 99, 227, 273, 384, 445
DpnII GATC 6 cut(s) 15, 97, 225, 271, 382, 443
DraIII CACNNNGTG 1 cut(s) 190
Eam1104I CTCTTC 2 cut(s) 17, 138
EarI CTCTTC 2 cut(s) 17, 138
Eco31I GGTCTC 1 cut(s) 400
Eco57I CTGAAG 3 cut(s) 162, 341, 393
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 22, 104, 406
FaiI YATR 9 cut(s) 20, 102, 119, 156, 198, 404, 435, 455, 457
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FaqI GGGAC 1 cut(s) 158
FatI CATG 3 cut(s) 18, 100, 402
FbaI TGATCA 2 cut(s) 15, 225
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 2 cut(s) 234, 436
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 4 cut(s) 72, 80, 188, 380
GluI GCNGC 1 cut(s) 331
Hin1II CATG 3 cut(s) 22, 104, 406
HphI GGTGA 2 cut(s) 176, 215
Hpy188I TCNGA 3 cut(s) 142, 373, 422
Hpy188III TCNNGA 2 cut(s) 19, 229
HpyCH4V TGCA 7 cut(s) 57, 136, 213, 321, 330, 363, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 3 cut(s) 242, 279, 347
Hsp92II CATG 3 cut(s) 22, 104, 406
Ksp22I TGATCA 2 cut(s) 15, 225
Kzo9I GATC 6 cut(s) 15, 97, 225, 271, 382, 443
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 51, 245, 254, 260, 272
Lsp1109I GCAGC 1 cut(s) 342
MaeI CTAG 4 cut(s) 72, 80, 188, 380
MaeIII GTNAC 1 cut(s) 182
MalI GATC 6 cut(s) 17, 99, 227, 273, 384, 445
MboI GATC 6 cut(s) 15, 97, 225, 271, 382, 443
MboII GAAGA 5 cut(s) 34, 155, 218, 347, 453
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 151
MnlI CCTC 3 cut(s) 139, 274, 356
MroXI GAANNNNTTC 2 cut(s) 125, 288
MspR9I CCNGG 1 cut(s) 260
Mva1269I GAATGC 4 cut(s) 47, 136, 215, 321
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 327
NdeII GATC 6 cut(s) 15, 97, 225, 271, 382, 443
NlaIII CATG 3 cut(s) 22, 104, 406
NmuCI GTSAC 1 cut(s) 182
PagI TCATGA 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 17
PctI GAATGC 4 cut(s) 47, 136, 215, 321
PdmI GAANNNNTTC 2 cut(s) 125, 288
PkrI GCNGC 1 cut(s) 332
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 182
PspGI CCWGG 1 cut(s) 258
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SapI GCTCTTC 1 cut(s) 17
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 6 cut(s) 15, 97, 225, 271, 382, 443
ScaI AGTACT 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 56, 67, 184, 189, 239, 371, 392
Sse9I AATT 1 cut(s) 151
SspMI CTAG 4 cut(s) 72, 80, 188, 380
StyD4I CCNGG 1 cut(s) 258
TasI AATT 1 cut(s) 151
TatI WGTACW 1 cut(s) 336
TscAI CASTG 1 cut(s) 365
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 35, 134
TspRI CASTG 1 cut(s) 365
XmnI GAANNNNTTC 2 cut(s) 125, 288
XspI CTAG 4 cut(s) 72, 80, 188, 380
ZrmI AGTACT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.