Rab subfamily of small GTPases
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G09900 AT5G03520 |
| fragaria_vesca | FvH4_3g35090 |
| malus_domestica | MD03G1099100.v1.1 MD11G1113000.v1.1 |
| prunus_persica | Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 |
| pyrus_communis | pycom03g08140 pycom11g09530 |
| rosa_chinensis | RchiOBHm_Chr5g0063091 |
| rosa_laevigata | RLG00000035603 |
| rosa_multiflora | Rmu_sc0005045.1_g000040 |
| rosa_roxburghii | Rroxscaffold_1G00017560 |
| rosa_rugosa | Rorug05G0354200 Rorug05G0354200 |
| rosa_samantha | Rh5AG414700 Rh5BG429600 Rh5CG453000 Rh5DG443100 |
| rosa_wichuraiana | Rw5G038970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 439 |
| AccI | GTMKAC | 1 cut(s) | 282 |
| AciI | CCGC | 3 cut(s) | 5, 72, 603 |
| AclI | AACGTT | 1 cut(s) | 226 |
| AcsI | RAATTY | 1 cut(s) | 461 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 439 |
| AgsI | TTSAA | 2 cut(s) | 157, 173 |
| AluBI | AGCT | 5 cut(s) | 23, 52, 389, 437, 632 |
| AluI | AGCT | 5 cut(s) | 23, 52, 389, 437, 632 |
| Alw21I | GWGCWC | 1 cut(s) | 25 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| AoxI | GGCC | 1 cut(s) | 430 |
| ApoI | RAATTY | 1 cut(s) | 461 |
| AspLEI | GCGC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 1 cut(s) | 430 |
| BanII | GRGCYC | 2 cut(s) | 25, 570 |
| BbsI | GAAGAC | 1 cut(s) | 603 |
| Bbv12I | GWGCWC | 1 cut(s) | 25 |
| BccI | CCATC | 2 cut(s) | 173, 259 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BfmI | CTRYAG | 3 cut(s) | 243, 615, 637 |
| BisI | GCNGC | 1 cut(s) | 603 |
| BlsI | GCNGC | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 1 cut(s) | 430 |
| BmsI | GCATC | 2 cut(s) | 585, 614 |
| BpiI | GAAGAC | 1 cut(s) | 603 |
| BsaJI | CCNNGG | 1 cut(s) | 571 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 439 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| Bse1I | ACTGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 1 cut(s) | 571 |
| BseGI | GGATG | 3 cut(s) | 301, 333, 403 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 439 |
| BseMII | CTCAG | 2 cut(s) | 120, 366 |
| BseNI | ACTGG | 1 cut(s) | 329 |
| BshFI | GGCC | 1 cut(s) | 432 |
| BsiHKAI | GWGCWC | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslFI | GGGAC | 1 cut(s) | 221 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 439 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsmBI | CGTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 1 cut(s) | 221 |
| BsnI | GGCC | 1 cut(s) | 432 |
| Bsp1286I | GDGCHC | 2 cut(s) | 25, 570 |
| Bsp143I | GATC | 1 cut(s) | 582 |
| BspACI | CCGC | 3 cut(s) | 5, 72, 603 |
| BspANI | GGCC | 1 cut(s) | 432 |
| BspCNI | CTCAG | 2 cut(s) | 119, 365 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 329 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 1 cut(s) | 571 |
| BssMI | GATC | 1 cut(s) | 582 |
| BssT1I | CCWWGG | 1 cut(s) | 571 |
| Bst4CI | ACNGT | 1 cut(s) | 169 |
| Bst6I | CTCTTC | 1 cut(s) | 77 |
| BstC8I | GCNNGC | 2 cut(s) | 15, 634 |
| BstDEI | CTNAG | 2 cut(s) | 106, 352 |
| BstF5I | GGATG | 3 cut(s) | 301, 333, 403 |
| BstHHI | GCGC | 1 cut(s) | 13 |
| BstKTI | GATC | 1 cut(s) | 585 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMBI | GATC | 1 cut(s) | 582 |
| BstNSI | RCATGY | 1 cut(s) | 350 |
| BstSFI | CTRYAG | 3 cut(s) | 243, 615, 637 |
| BstV2I | GAAGAC | 1 cut(s) | 603 |
| BsuRI | GGCC | 1 cut(s) | 432 |
| BtgZI | GCGATG | 1 cut(s) | 278 |
| BtsCI | GGATG | 3 cut(s) | 301, 333, 403 |
| BtsI | GCAGTG | 1 cut(s) | 210 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 15, 634 |
| CfoI | GCGC | 1 cut(s) | 13 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 430 |
| CviAII | CATG | 2 cut(s) | 347, 511 |
| DdeI | CTNAG | 2 cut(s) | 106, 352 |
| DpnI | GATC | 1 cut(s) | 584 |
| DpnII | GATC | 1 cut(s) | 582 |
| Eam1104I | CTCTTC | 1 cut(s) | 77 |
| EarI | CTCTTC | 1 cut(s) | 77 |
| Ecl136II | GAGCTC | 1 cut(s) | 23 |
| Eco130I | CCWWGG | 1 cut(s) | 571 |
| Eco24I | GRGCYC | 2 cut(s) | 25, 570 |
| Eco53kI | GAGCTC | 1 cut(s) | 23 |
| EcoICRI | GAGCTC | 1 cut(s) | 23 |
| EcoT14I | CCWWGG | 1 cut(s) | 571 |
| EcoT38I | GRGCYC | 2 cut(s) | 25, 570 |
| ErhI | CCWWGG | 1 cut(s) | 571 |
| Esp3I | CGTCTC | 1 cut(s) | 464 |
| FaeI | CATG | 2 cut(s) | 350, 514 |
| FaiI | YATR | 7 cut(s) | 36, 272, 348, 395, 453, 512, 530 |
| FaqI | GGGAC | 1 cut(s) | 221 |
| FatI | CATG | 2 cut(s) | 346, 510 |
| FblI | GTMKAC | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 1 cut(s) | 603 |
| FokI | GGATG | 3 cut(s) | 308, 340, 410 |
| FriOI | GRGCYC | 2 cut(s) | 25, 570 |
| Fsp4HI | GCNGC | 1 cut(s) | 603 |
| GlaI | GCGC | 1 cut(s) | 12 |
| GluI | GCNGC | 1 cut(s) | 603 |
| HaeIII | GGCC | 1 cut(s) | 432 |
| HapII | CCGG | 1 cut(s) | 14 |
| HhaI | GCGC | 1 cut(s) | 13 |
| Hin1II | CATG | 2 cut(s) | 350, 514 |
| Hin6I | GCGC | 1 cut(s) | 11 |
| HinP1I | GCGC | 1 cut(s) | 11 |
| HincII | GTYRAC | 1 cut(s) | 364 |
| HindII | GTYRAC | 1 cut(s) | 364 |
| HindIII | AAGCTT | 2 cut(s) | 50, 435 |
| HinfI | GANTC | 3 cut(s) | 102, 299, 456 |
| HpaII | CCGG | 1 cut(s) | 14 |
| Hpy166II | GTNNAC | 2 cut(s) | 283, 364 |
| Hpy188I | TCNGA | 4 cut(s) | 31, 109, 233, 355 |
| Hpy188III | TCNNGA | 3 cut(s) | 157, 221, 580 |
| Hpy8I | GTNNAC | 2 cut(s) | 283, 364 |
| HpyAV | CCTTC | 1 cut(s) | 553 |
| HpyCH4III | ACNGT | 1 cut(s) | 169 |
| HpyCH4IV | ACGT | 2 cut(s) | 226, 645 |
| HpyCH4V | TGCA | 2 cut(s) | 199, 479 |
| HpyF3I | CTNAG | 2 cut(s) | 106, 352 |
| HpySE526I | ACGT | 2 cut(s) | 226, 645 |
| Hsp92II | CATG | 2 cut(s) | 350, 514 |
| HspAI | GCGC | 1 cut(s) | 11 |
| KroI | GCCGGC | 1 cut(s) | 13 |
| KroNI | GCCGGC | 1 cut(s) | 15 |
| Kzo9I | GATC | 1 cut(s) | 582 |
| LmnI | GCTCC | 1 cut(s) | 260 |
| LpnPI | CCDG | 4 cut(s) | 27, 201, 241, 310 |
| LweI | GCATC | 2 cut(s) | 585, 614 |
| MaeII | ACGT | 2 cut(s) | 226, 645 |
| MaeIII | GTNAC | 4 cut(s) | 93, 289, 380, 641 |
| MalI | GATC | 1 cut(s) | 584 |
| MboI | GATC | 1 cut(s) | 582 |
| MboII | GAAGA | 4 cut(s) | 47, 94, 343, 603 |
| MhlI | GDGCHC | 2 cut(s) | 25, 570 |
| MluCI | AATT | 2 cut(s) | 194, 461 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MmeI | TCCRAC | 1 cut(s) | 443 |
| MnlI | CCTC | 3 cut(s) | 53, 361, 500 |
| MroNI | GCCGGC | 1 cut(s) | 13 |
| MseI | TTAA | 1 cut(s) | 309 |
| MspI | CCGG | 1 cut(s) | 14 |
| NaeI | GCCGGC | 1 cut(s) | 15 |
| NdeII | GATC | 1 cut(s) | 582 |
| NgoMIV | GCCGGC | 1 cut(s) | 13 |
| NlaIII | CATG | 2 cut(s) | 350, 514 |
| NmeAIII | GCCGAG | 1 cut(s) | 646 |
| NspI | RCATGY | 1 cut(s) | 350 |
| PdiI | GCCGGC | 1 cut(s) | 15 |
| PfeI | GAWTC | 2 cut(s) | 102, 456 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 439 |
| PkrI | GCNGC | 1 cut(s) | 604 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| Psp124BI | GAGCTC | 1 cut(s) | 25 |
| Psp1406I | AACGTT | 1 cut(s) | 226 |
| PspPI | GGNCC | 1 cut(s) | 430 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 226, 258 |
| SacI | GAGCTC | 1 cut(s) | 25 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 1 cut(s) | 603 |
| Sau3AI | GATC | 1 cut(s) | 582 |
| Sau96I | GGNCC | 1 cut(s) | 430 |
| SchI | GAGTC | 1 cut(s) | 308 |
| SduI | GDGCHC | 2 cut(s) | 25, 570 |
| SetI | ASST | 9 cut(s) | 25, 45, 54, 229, 391, 439, 492, 634, 648 |
| SfaNI | GCATC | 2 cut(s) | 585, 614 |
| SfcI | CTRYAG | 3 cut(s) | 243, 615, 637 |
| Sse9I | AATT | 2 cut(s) | 194, 461 |
| SsiI | CCGC | 3 cut(s) | 5, 72, 603 |
| SspI | AATATT | 2 cut(s) | 316, 372 |
| SstI | GAGCTC | 1 cut(s) | 25 |
| StyI | CCWWGG | 1 cut(s) | 571 |
| TaaI | ACNGT | 1 cut(s) | 169 |
| TaiI | ACGT | 2 cut(s) | 229, 648 |
| TaqI | TCGA | 2 cut(s) | 100, 498 |
| TasI | AATT | 2 cut(s) | 194, 461 |
| TauI | GCSGC | 1 cut(s) | 605 |
| TfiI | GAWTC | 2 cut(s) | 102, 456 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TspDTI | ATGAA | 4 cut(s) | 121, 344, 414, 499 |
| TspGWI | ACGGA | 1 cut(s) | 308 |
| TspRI | CASTG | 1 cut(s) | 217 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 439 |
| XapI | RAATTY | 1 cut(s) | 461 |
| XceI | RCATGY | 1 cut(s) | 350 |
| XmiI | GTMKAC | 1 cut(s) | 282 |