Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008980

Physical Location & Seq

Genomic Coordinates Forward (+)

6559539 .. 6562323

Gene Structure 2785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08140.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCTGCTCCACCGGCAAGGGCTAGAGCCGATTACGATTACCTCATAAAACTTCTGCTCATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGTTTCTCAGATGGTTCCTTCACCACTAGTTTCATAACTACCATTGGCATTGATTTCAAGATAAGGACCATTGAGCTTGATGGAAAACGAATTAAGCTCCAAATTTGGGATACAGCTGGTCAGGAGAGGTTCCGTACAATCACTACTGCTTACTATCGTGGAGCCATGGGAATTTTGCTGGTCTATGATGTAACCGATGAATCATCTTTCAATAACATAAGGAATTGGATTCGCAACATTGAACAGCATGCATCAGATAACGTTAACAAAATACTTGTAGGGAACAAGGCTGACATGGATGAAAGCAAACGGGCTGTGCCTACCTCCAAGGGCCAAGCACTTGCTGATGAATATGGGATCAAGTTCTTTGAAACGAGTGCAAAGACTAATCTTAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGAGACATAAAGCAACGGCTTGCAGACACCGACACTAGGGCTGAGCCTACCACAATCAAGATCAACCCTGACCAGGGAGCCGGGGCCGGTCAAGCTGCACAAAGATCAGCTTGCTGCGGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

216

Amino Acids

23.76

Weight (kDa)

8.39

Isoelectric Point (pI)

32.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09900 AT5G03520
fragaria_vesca	FvH4_3g35090
malus_domestica	MD03G1099100.v1.1 MD11G1113000.v1.1
prunus_persica	Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1
pyrus_communis	pycom03g08140 pycom11g09530
rosa_chinensis	RchiOBHm_Chr5g0063091
rosa_laevigata	RLG00000035603
rosa_multiflora	Rmu_sc0005045.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017560
rosa_rugosa	Rorug05G0354200 Rorug05G0354200
rosa_samantha	Rh5AG414700 Rh5BG429600 Rh5CG453000 Rh5DG443100
rosa_wichuraiana	Rw5G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	72, 639
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	201, 270
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	4 cut(s)	205, 558, 595, 596
AgsI	TTSAA	5 cut(s)	157, 310, 341, 470, 516
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	5 cut(s)	175, 196, 215, 617, 632
AluI	AGCT	5 cut(s)	175, 196, 215, 617, 632
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	2 cut(s)	430, 606
ApeKI	GCWGC	3 cut(s)	5, 617, 636
ApoI	RAATTY	2 cut(s)	201, 270
AspS9I	GGNCC	3 cut(s)	165, 430, 606
AsuC2I	CCSGG	1 cut(s)	604
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	604, 623
BccI	CCATC	2 cut(s)	104, 173
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	596
BciVI	GTATCC	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	604
BcoDI	GTCTC	1 cut(s)	519
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	3 cut(s)	24, 126, 558
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	3 cut(s)	6, 618, 637
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	7, 619, 638
Bme1390I	CCNGG	2 cut(s)	596, 604
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	165, 430, 606
BmiI	GGNNCC	5 cut(s)	115, 230, 262, 601, 607
BmrFI	CCNGG	2 cut(s)	596, 604
BmsI	GCATC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	604
BsaJI	CCNNGG	4 cut(s)	264, 426, 595, 603
Bsc4I	CCNNNNNNNGG	4 cut(s)	205, 558, 595, 596
Bse118I	RCCGGY	2 cut(s)	13, 608
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	4 cut(s)	264, 426, 595, 603
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	4 cut(s)	205, 558, 595, 596
BseMII	CTCAG	2 cut(s)	120, 555
BseXI	GCAGC	2 cut(s)	604, 623
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	2 cut(s)	432, 608
BsiSI	CCGG	3 cut(s)	14, 603, 609
BslI	CCNNNNNNNGG	4 cut(s)	205, 558, 595, 596
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	2 cut(s)	432, 608
Bsp143I	GATC	3 cut(s)	456, 582, 626
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	72, 639
BspANI	GGCC	2 cut(s)	432, 608
BspCNI	CTCAG	2 cut(s)	119, 556
BspLI	GGNNCC	5 cut(s)	115, 230, 262, 601, 607
BspPI	GGATC	1 cut(s)	464
BsrFI	RCCGGY	2 cut(s)	13, 608
BssAI	RCCGGY	2 cut(s)	13, 608
BssECI	CCNNGG	4 cut(s)	264, 426, 595, 603
BssMI	GATC	3 cut(s)	456, 582, 626
BssT1I	CCWWGG	2 cut(s)	264, 426
Bst2UI	CCWGG	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	348, 543, 634
BstDEI	CTNAG	2 cut(s)	106, 564
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	3 cut(s)	459, 585, 629
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	3 cut(s)	456, 582, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 614
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	594, 602
BstV1I	GCAGC	2 cut(s)	604, 623
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	432, 608
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	3 cut(s)	348, 543, 634
Cfr10I	RCCGGY	2 cut(s)	13, 608
Cfr13I	GGNCC	3 cut(s)	165, 430, 606
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	265, 347, 394
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	2 cut(s)	106, 564
DpnI	GATC	3 cut(s)	458, 584, 628
DpnII	GATC	3 cut(s)	456, 582, 626
Eco130I	CCWWGG	2 cut(s)	264, 426
Eco47I	GGWCC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	264, 426
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	264, 426
FaeI	CATG	3 cut(s)	268, 350, 397
FaiI	YATR	9 cut(s)	47, 134, 266, 285, 317, 348, 395, 453, 530
FalI	AAGNNNNNCTT	2 cut(s)	616, 648
FatI	CATG	3 cut(s)	264, 346, 393
Fnu4HI	GCNGC	3 cut(s)	6, 618, 637
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	3 cut(s)	6, 618, 637
FspBI	CTAG	3 cut(s)	24, 126, 558
GluI	GCNGC	3 cut(s)	6, 618, 637
HaeIII	GGCC	2 cut(s)	432, 608
HapII	CCGG	3 cut(s)	14, 603, 609
Hin1II	CATG	3 cut(s)	268, 350, 397
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	299, 328
HpaI	GTTAAC	1 cut(s)	364
HpaII	CCGG	3 cut(s)	14, 603, 609
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	109, 355
Hpy188III	TCNNGA	3 cut(s)	157, 221, 580
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	101, 127
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	4 cut(s)	350, 479, 545, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 614
HpyF3I	CTNAG	2 cut(s)	106, 564
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	3 cut(s)	268, 350, 397
KspAI	GTTAAC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	456, 582, 626
LmnI	GCTCC	5 cut(s)	13, 201, 260, 499, 599
LpnPI	CCDG	9 cut(s)	27, 201, 206, 263, 581, 603, 608, 616, 622
Lsp1109I	GCAGC	2 cut(s)	604, 623
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	3 cut(s)	24, 126, 558
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	458, 584, 628
MboI	GATC	3 cut(s)	456, 582, 626
MluCI	AATT	4 cut(s)	189, 201, 270, 322
MnlI	CCTC	3 cut(s)	53, 219, 433
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	4 cut(s)	192, 363, 492, 646
MspA1I	CMGCKG	2 cut(s)	72, 215
MspI	CCGG	3 cut(s)	14, 603, 609
MspR9I	CCNGG	2 cut(s)	596, 604
MvaI	CCWGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	14, 614
NciI	CCSGG	1 cut(s)	604
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	456, 582, 626
NlaIII	CATG	3 cut(s)	268, 350, 397
NlaIV	GGNNCC	5 cut(s)	115, 230, 262, 601, 607
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	299, 328
PkrI	GCNGC	3 cut(s)	7, 619, 638
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	5 cut(s)	115, 230, 262, 601, 607
PspPI	GGNCC	3 cut(s)	165, 430, 606
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	4 cut(s)	192, 363, 492, 646
SatI	GCNGC	3 cut(s)	6, 618, 637
Sau3AI	GATC	3 cut(s)	456, 582, 626
Sau96I	GGNCC	3 cut(s)	165, 430, 606
ScrFI	CCNGG	2 cut(s)	596, 604
SetI	ASST	9 cut(s)	45, 177, 198, 217, 230, 363, 425, 619, 634
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	165
SpeI	ACTAGT	1 cut(s)	125
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	4 cut(s)	189, 201, 270, 322
SsiI	CCGC	2 cut(s)	72, 639
SspMI	CTAG	3 cut(s)	24, 126, 558
StyD4I	CCNGG	2 cut(s)	594, 602
StyI	CCWWGG	2 cut(s)	264, 426
TaiI	ACGT	1 cut(s)	363
TasI	AATT	4 cut(s)	189, 201, 270, 322
TfiI	GAWTC	2 cut(s)	299, 328
Tru1I	TTAA	4 cut(s)	192, 363, 492, 646
Tru9I	TTAA	4 cut(s)	192, 363, 492, 646
TseI	GCWGC	3 cut(s)	5, 617, 636
TspDTI	ATGAA	4 cut(s)	121, 312, 414, 462
TspGWI	ACGGA	1 cut(s)	221
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	2 cut(s)	201, 270
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	3 cut(s)	24, 126, 558
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.