Rroxscaffold_1G00017560

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008980
Physical Location & Seq
Forward (+)
21610813 .. 21615149
4337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00017560.1

Sequence Viewer

Length: 384 bp
ATGGGGATTTTGCTGGTCTATGATGTTACAGATGAATCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAACAGCATGCATCAGATAATGTCAACAAAATACTTGTAGGTAACAAGGCTGACATGGACGAAAGTAAAAGGGCTGTGCCTACCTCTAAGGGCCAAGCACTTGCTGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCAAAGACGAATCTCAACGTGGAGCAAGTTTTTTTCTCAATAGCACGAGACATTAAGCAACGGCTTGCAGACACTGATACTAGGGCTGAGCCAACCACAATCAAGATCAATCAACCTGACCAGGCAGGTGGAGCTGGTCAAGCTGCACAAAAGTCGGGTTGCTGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

5.37

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ras PF00071 2 - 90 1e-30 Ras family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 329
AclWI GGATC 1 cut(s) 200
AgsI TTSAA 3 cut(s) 46, 77, 206
AhlI ACTAGT 1 cut(s) 209
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 2 cut(s) 347, 356
AluI AGCT 2 cut(s) 347, 356
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 287
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 166
BauI CACGAG 1 cut(s) 258
BbvI GCAGC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 209
BfaI CTAG 2 cut(s) 210, 294
BfuAI ACCTGC 1 cut(s) 329
BisI GCNGC 1 cut(s) 357
BlpI GCTNAGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 335
BmgT120I GGNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 255
BsnI GGCC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 192, 318
Bsp1720I GCTNAGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 292
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 65
BssMI GATC 2 cut(s) 192, 318
BssSI CACGAG 1 cut(s) 258
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 84, 279
BstDEI CTNAG 2 cut(s) 162, 300
BstKTI GATC 2 cut(s) 195, 321
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 192, 318
BstMWI GCNNNNNNNGC 2 cut(s) 344, 353
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 343
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuRI GGCC 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 84, 279
CaiI CAGNNNCTG 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 166
CviAII CATG 2 cut(s) 83, 130
CviJI RGCY 8 cut(s) 125, 149, 168, 277, 299, 304, 347, 356
CviKI_1 RGCY 8 cut(s) 125, 149, 168, 277, 299, 304, 347, 356
DdeI CTNAG 2 cut(s) 162, 300
DpnI GATC 2 cut(s) 194, 320
DpnII GATC 2 cut(s) 192, 318
EcoRII CCWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 88
FaeI CATG 2 cut(s) 86, 133
FaiI YATR 4 cut(s) 21, 84, 131, 189
FatI CATG 2 cut(s) 82, 129
Fnu4HI GCNGC 1 cut(s) 357
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 210, 294
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 168
Hin1II CATG 2 cut(s) 86, 133
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 3 cut(s) 35, 64, 223
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4IV ACGT 1 cut(s) 231
HpyCH4V TGCA 4 cut(s) 86, 215, 281, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 353
HpyF3I CTNAG 2 cut(s) 162, 300
HpySE526I ACGT 1 cut(s) 231
Hsp92II CATG 2 cut(s) 86, 133
Kzo9I GATC 2 cut(s) 192, 318
LmnI GCTCC 2 cut(s) 235, 344
LpnPI CCDG 6 cut(s) 46, 320, 324, 333, 342, 347
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 95
MaeI CTAG 2 cut(s) 210, 294
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 25, 116
MalI GATC 2 cut(s) 194, 320
MboI GATC 2 cut(s) 192, 318
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 88
MseI TTAA 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 2 cut(s) 344, 353
NdeII GATC 2 cut(s) 192, 318
NlaIII CATG 2 cut(s) 86, 133
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PaqCI CACCTGC 1 cut(s) 329
PfeI GAWTC 3 cut(s) 35, 64, 223
PkrI GCNGC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspPI GGNCC 1 cut(s) 166
PstNI CAGNNNCTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 192, 318
Sau96I GGNCC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 335
SetI ASST 7 cut(s) 118, 161, 234, 331, 343, 349, 358
SfaNI GCATC 1 cut(s) 95
SpeI ACTAGT 1 cut(s) 209
SphI GCATGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 210, 294
StyD4I CCNGG 1 cut(s) 333
TaiI ACGT 1 cut(s) 234
TfiI GAWTC 3 cut(s) 35, 64, 223
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 292
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 292
XceI RCATGY 1 cut(s) 86
XspI CTAG 2 cut(s) 210, 294
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.