RLG00000035603

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008980
Physical Location & Seq
Reverse (-)
69253696 .. 69257188
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035603

Sequence Viewer

Length: 720 bp
ATGGCTGCTCCACCAGCAAGGGCTAGAGCCGATTACGATTACCTCATAAAGCTTCTTTTGATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGTTTCTCGGATGGTTCCTTCACCACTAGTTTCATAACAACCATTGGGATTGATTTTAAGATAAGGACCATTGAACTAGATGGAAAACGGATTAAGCTTCAAATTTGGGATACAGCTGGTCAGGAACGGTTCCGTACAATCACAACTGCTTACTATCGTGGAGCCATGGGGATTTTGCTGGTCTATGATGTGACAGATGAATCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAACAGCATGCATCAGATAATGTCAACAAAATACTTGTAGGTAACAAGGCTGACATGGACGAAAGTAAAAGGGTGAGCTTGTGCAAATTTTCAACAATTTTCTTCACCAGATTGCATAGACTTTTCAATGGGGAAGCTTGTTTTGCTGTGCCTACCTCTAAGGGCCAAGCACTTGCTGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCAAAGACGAATCTCAACGTGGAGCAAGTTTTTTTCTCAATAGCACGAGACATTAAGCAACGGCTTGCAGACACTGATACTAGGGCTGAGCCAACCACAATCAAGATCAATCAACCTGACCAGGCAGGTGGAGCTGGTCAAGCTGCACAAAAGTCGGGTTGCTGTGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

240

Amino Acids

26.59

Weight (kDa)

8.77

Isoelectric Point (pI)

29.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 16 - 137 1.6e-14 ADP-ribosylation factor family
Ras PF00071 17 - 202 1.7e-64 Ras family
Roc PF08477 17 - 131 7.5e-35 Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU PF00009 49 - 197 8.1e-07 Elongation factor Tu GTP binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 665
AciI CCGC 1 cut(s) 72
AclWI GGATC 1 cut(s) 536
AcsI RAATTY 2 cut(s) 201, 425
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 7 cut(s) 173, 200, 310, 341, 432, 466, 542
AhlI ACTAGT 2 cut(s) 125, 545
AjnI CCWGG 1 cut(s) 669
AluBI AGCT 7 cut(s) 52, 196, 215, 417, 476, 683, 692
AluI AGCT 7 cut(s) 52, 196, 215, 417, 476, 683, 692
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 1 cut(s) 536
AlwNI CAGNNNCTG 1 cut(s) 623
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 2 cut(s) 5, 692
ApoI RAATTY 2 cut(s) 201, 425
AspS9I GGNCC 2 cut(s) 165, 502
AsuHPI GGTGA 3 cut(s) 112, 424, 436
AvaII GGWCC 1 cut(s) 165
BauI CACGAG 1 cut(s) 594
BbvI GCAGC 1 cut(s) 679
BccI CCATC 2 cut(s) 104, 173
BceAI ACGGC 1 cut(s) 626
BcgI CGANNNNNNTGC 2 cut(s) 684, 718
BciT130I CCWGG 1 cut(s) 671
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 591
BcuI ACTAGT 2 cut(s) 125, 545
BfaI CTAG 5 cut(s) 24, 126, 176, 546, 630
BfuAI ACCTGC 1 cut(s) 665
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 6, 693
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 2 cut(s) 7, 694
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 2 cut(s) 165, 502
BmiI GGNNCC 3 cut(s) 115, 230, 262
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 636
BsaJI CCNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 1 cut(s) 671
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 1 cut(s) 679
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 1 cut(s) 504
BsmAI GTCTC 1 cut(s) 591
BsnI GGCC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 60, 528, 654
Bsp1720I GCTNAGC 1 cut(s) 636
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 1 cut(s) 628
BspLI GGNNCC 3 cut(s) 115, 230, 262
BspMI ACCTGC 1 cut(s) 665
BspPI GGATC 1 cut(s) 536
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 60, 528, 654
BssSI CACGAG 1 cut(s) 594
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 594
Bst2UI CCWGG 1 cut(s) 671
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 2 cut(s) 348, 615
BstDEI CTNAG 2 cut(s) 498, 636
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 63, 531, 657
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 60, 528, 654
BstMWI GCNNNNNNNGC 4 cut(s) 14, 482, 680, 689
BstNI CCWGG 1 cut(s) 671
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 669
BstV1I GCAGC 1 cut(s) 679
BstXI CCANNNNNNTGG 1 cut(s) 677
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 504
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 665
Cac8I GCNNGC 2 cut(s) 348, 615
CaiI CAGNNNCTG 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 165, 502
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 265, 347, 394
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 498, 636
DpnI GATC 3 cut(s) 62, 530, 656
DpnII GATC 3 cut(s) 60, 528, 654
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 669
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 3 cut(s) 268, 350, 397
FaiI YATR 8 cut(s) 47, 134, 266, 285, 348, 395, 456, 525
FatI CATG 3 cut(s) 264, 346, 393
Fnu4HI GCNGC 2 cut(s) 6, 693
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 6, 693
FspBI CTAG 5 cut(s) 24, 126, 176, 546, 630
GluI GCNGC 2 cut(s) 6, 693
HaeIII GGCC 1 cut(s) 504
Hin1II CATG 3 cut(s) 268, 350, 397
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 3 cut(s) 50, 194, 474
HinfI GANTC 3 cut(s) 299, 328, 559
HphI GGTGA 3 cut(s) 112, 424, 436
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 109, 355
Hpy188III TCNNGA 2 cut(s) 221, 652
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 101, 127
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 6 cut(s) 350, 423, 454, 551, 617, 695
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 482, 680, 689
HpyF3I CTNAG 2 cut(s) 498, 636
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 3 cut(s) 268, 350, 397
Kzo9I GATC 3 cut(s) 60, 528, 654
LmnI GCTCC 4 cut(s) 13, 260, 571, 680
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 359
MaeI CTAG 5 cut(s) 24, 126, 176, 546, 630
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 289, 380
MalI GATC 3 cut(s) 62, 530, 656
MboI GATC 3 cut(s) 60, 528, 654
MboII GAAGA 1 cut(s) 433
MluCI AATT 3 cut(s) 201, 425, 435
MnlI CCTC 2 cut(s) 53, 505
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 3 cut(s) 156, 192, 603
MspA1I CMGCKG 2 cut(s) 72, 215
MspR9I CCNGG 1 cut(s) 671
MvaI CCWGG 1 cut(s) 671
MwoI GCNNNNNNNGC 4 cut(s) 14, 482, 680, 689
NcoI CCATGG 1 cut(s) 264
NdeII GATC 3 cut(s) 60, 528, 654
NlaIII CATG 3 cut(s) 268, 350, 397
NlaIV GGNNCC 3 cut(s) 115, 230, 262
NmuCI GTSAC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PaqCI CACCTGC 1 cut(s) 665
PfeI GAWTC 3 cut(s) 299, 328, 559
PkrI GCNGC 2 cut(s) 7, 694
Psp6I CCWGG 1 cut(s) 669
PspGI CCWGG 1 cut(s) 669
PspN4I GGNNCC 3 cut(s) 115, 230, 262
PspPI GGNCC 2 cut(s) 165, 502
PstNI CAGNNNCTG 1 cut(s) 623
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 156, 192, 603
SatI GCNGC 2 cut(s) 6, 693
Sau3AI GATC 3 cut(s) 60, 528, 654
Sau96I GGNCC 2 cut(s) 165, 502
ScrFI CCNGG 1 cut(s) 671
SfaNI GCATC 1 cut(s) 359
SinI GGWCC 1 cut(s) 165
SpeI ACTAGT 2 cut(s) 125, 545
SphI GCATGC 1 cut(s) 350
Sse9I AATT 3 cut(s) 201, 425, 435
SsiI CCGC 1 cut(s) 72
SspMI CTAG 5 cut(s) 24, 126, 176, 546, 630
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 570
TasI AATT 3 cut(s) 201, 425, 435
TfiI GAWTC 3 cut(s) 299, 328, 559
Tru1I TTAA 3 cut(s) 156, 192, 603
Tru9I TTAA 3 cut(s) 156, 192, 603
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 2 cut(s) 5, 692
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 121, 312
TspGWI ACGGA 2 cut(s) 202, 221
TspRI CASTG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 2 cut(s) 201, 425
XceI RCATGY 1 cut(s) 350
XspI CTAG 5 cut(s) 24, 126, 176, 546, 630
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.