Prupe.6G083700_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0008980
Physical Location & Seq
Forward (+)
5654257 .. 5658279
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G083700.4

Sequence Viewer

Length: 651 bp
ATGGCTGCTCCACCGGCAAGGGCTAGAGCCGATTACGATTACCTCATAAAGCTTCTATTGATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGCTTCTCAGATGGTTCCTTCACAACTAGTTTCATCACAACCATTGGCATTGATTTCAAGATAAGGACTATTGAGCTTGATGGAAAACGAATTAAGCTCCAAATTTGGGATACAGCTGGTCAGGAGCGGTTCCGTACAATCACCACTGCTTACTATCGTGGAGCCATGGGCATTTTGCTGGTCTATGATGTTACCGATGAATCATCTTTCAATAACATAAGGAATTGGATTCGCAACATTGAACAGCATGCATCAGACAACGTTAACAAAATACTCGTAGGGAACAAGGCTGACATGGACGAAAGCAAACGGGCTGTGCCTACGTCCAAGGGCCAAGCACTTGCTGACGAATATGGCATCAAGTTCTTTGAAACTAGTGCAAAGACGAATCTAAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGAGACATAAAGCAACGGCTTGCAGACACCGACACTAGGGCTGAGCCTACCACGATCAAGATCAACCAACCAGATCAGGGAGCTGGGGCTGGTCAAGCTGCACAAAGATCAGCTTGCTGTGGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972
Pfam Domains
Protein Families
Ras

Protein Analysis

217

Amino Acids

23.88

Weight (kDa)

8.39

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 226
AciI CCGC 2 cut(s) 72, 226
AclI AACGTT 1 cut(s) 360
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 3 cut(s) 205, 558, 599
AgsI TTSAA 5 cut(s) 157, 310, 341, 470, 516
AhlI ACTAGT 2 cut(s) 125, 473
AluBI AGCT 7 cut(s) 52, 175, 196, 215, 605, 620, 635
AluI AGCT 7 cut(s) 52, 175, 196, 215, 605, 620, 635
Alw26I GTCTC 1 cut(s) 519
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 5, 620
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 232
BbvI GCAGC 1 cut(s) 607
BccI CCATC 2 cut(s) 104, 173
BceAI ACGGC 1 cut(s) 554
BciVI GTATCC 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 519
BcuI ACTAGT 2 cut(s) 125, 473
BfaI CTAG 4 cut(s) 24, 126, 474, 558
BfuI GTATCC 1 cut(s) 202
BisI GCNGC 2 cut(s) 6, 621
BlpI GCTNAGC 1 cut(s) 564
BlsI GCNGC 2 cut(s) 7, 622
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 3 cut(s) 115, 230, 262
BmsI GCATC 2 cut(s) 359, 465
Bpu1102I GCTNAGC 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 581
BsaJI CCNNGG 2 cut(s) 264, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 558, 599
Bse118I RCCGGY 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 581
BseDI CCNNGG 2 cut(s) 264, 426
BseJI GATNNNNATC 1 cut(s) 581
BseLI CCNNNNNNNGG 3 cut(s) 205, 558, 599
BseMII CTCAG 2 cut(s) 120, 555
BseXI GCAGC 1 cut(s) 607
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 606
BshFI GGCC 1 cut(s) 432
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 3 cut(s) 205, 558, 599
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 1 cut(s) 432
Bsp143I GATC 5 cut(s) 60, 576, 582, 595, 629
Bsp1720I GCTNAGC 1 cut(s) 564
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 2 cut(s) 72, 226
BspANI GGCC 1 cut(s) 432
BspCNI CTCAG 2 cut(s) 119, 556
BspLI GGNNCC 3 cut(s) 115, 230, 262
BsrBI CCGCTC 1 cut(s) 226
BsrFI RCCGGY 1 cut(s) 13
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 2 cut(s) 264, 426
BssMI GATC 5 cut(s) 60, 576, 582, 595, 629
BssT1I CCWWGG 2 cut(s) 264, 426
BstC8I GCNNGC 3 cut(s) 348, 543, 637
BstDEI CTNAG 2 cut(s) 106, 564
BstDSI CCRYGG 1 cut(s) 264
BstHHI GCGC 1 cut(s) 102
BstKTI GATC 5 cut(s) 63, 579, 585, 598, 632
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 60, 576, 582, 595, 629
BstMWI GCNNNNNNNGC 2 cut(s) 14, 617
BstNSI RCATGY 1 cut(s) 350
BstV1I GCAGC 1 cut(s) 607
BsuI GTATCC 1 cut(s) 202
BsuRI GGCC 1 cut(s) 432
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 348, 543, 637
CfoI GCGC 1 cut(s) 102
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 1 cut(s) 234
CviAII CATG 3 cut(s) 265, 347, 394
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 2 cut(s) 106, 564
DpnI GATC 5 cut(s) 62, 578, 584, 597, 631
DpnII GATC 5 cut(s) 60, 576, 582, 595, 629
Eco130I CCWWGG 2 cut(s) 264, 426
EcoT14I CCWWGG 2 cut(s) 264, 426
EcoT22I ATGCAT 1 cut(s) 352
ErhI CCWWGG 2 cut(s) 264, 426
FaeI CATG 3 cut(s) 268, 350, 397
FaiI YATR 8 cut(s) 47, 266, 285, 317, 348, 395, 453, 530
FalI AAGNNNNNCTT 2 cut(s) 619, 651
FatI CATG 3 cut(s) 264, 346, 393
Fnu4HI GCNGC 2 cut(s) 6, 621
Fsp4HI GCNGC 2 cut(s) 6, 621
FspBI CTAG 4 cut(s) 24, 126, 474, 558
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 6, 621
GsaI CCCAGC 1 cut(s) 609
HaeIII GGCC 1 cut(s) 432
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 102
Hin1II CATG 3 cut(s) 268, 350, 397
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 50
HinfI GANTC 3 cut(s) 299, 328, 487
HpaI GTTAAC 1 cut(s) 364
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 109, 355
Hpy188III TCNNGA 3 cut(s) 157, 221, 580
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 101, 127
HpyCH4IV ACGT 2 cut(s) 360, 422
HpyCH4V TGCA 4 cut(s) 350, 479, 545, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 617
HpyF3I CTNAG 2 cut(s) 106, 564
HpySE526I ACGT 2 cut(s) 360, 422
Hsp92II CATG 3 cut(s) 268, 350, 397
HspAI GCGC 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 5 cut(s) 60, 576, 582, 595, 629
LmnI GCTCC 6 cut(s) 13, 201, 223, 260, 499, 602
LpnPI CCDG 8 cut(s) 27, 201, 206, 263, 584, 591, 597, 606
Lsp1109I GCAGC 1 cut(s) 607
LweI GCATC 2 cut(s) 359, 465
MaeI CTAG 4 cut(s) 24, 126, 474, 558
MaeII ACGT 2 cut(s) 360, 422
MaeIII GTNAC 1 cut(s) 289
MalI GATC 5 cut(s) 62, 578, 584, 597, 631
MbiI CCGCTC 1 cut(s) 226
MboI GATC 5 cut(s) 60, 576, 582, 595, 629
MluCI AATT 3 cut(s) 189, 201, 322
MnlI CCTC 1 cut(s) 53
Mph1103I ATGCAT 1 cut(s) 352
MseI TTAA 3 cut(s) 192, 363, 649
MspA1I CMGCKG 2 cut(s) 72, 215
MspI CCGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 14, 617
NcoI CCATGG 1 cut(s) 264
NdeII GATC 5 cut(s) 60, 576, 582, 595, 629
NlaIII CATG 3 cut(s) 268, 350, 397
NlaIV GGNNCC 3 cut(s) 115, 230, 262
NsiI ATGCAT 1 cut(s) 352
NspI RCATGY 1 cut(s) 350
PaeI GCATGC 1 cut(s) 350
PfeI GAWTC 3 cut(s) 299, 328, 487
PkrI GCNGC 2 cut(s) 7, 622
Psp1406I AACGTT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 605
PspN4I GGNNCC 3 cut(s) 115, 230, 262
PspPI GGNCC 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 3 cut(s) 192, 363, 649
SatI GCNGC 2 cut(s) 6, 621
Sau3AI GATC 5 cut(s) 60, 576, 582, 595, 629
Sau96I GGNCC 1 cut(s) 430
SfaNI GCATC 2 cut(s) 359, 465
SpeI ACTAGT 2 cut(s) 125, 473
SphI GCATGC 1 cut(s) 350
Sse9I AATT 3 cut(s) 189, 201, 322
SsiI CCGC 2 cut(s) 72, 226
SspMI CTAG 4 cut(s) 24, 126, 474, 558
StyI CCWWGG 2 cut(s) 264, 426
TaiI ACGT 2 cut(s) 363, 425
TasI AATT 3 cut(s) 189, 201, 322
TfiI GAWTC 3 cut(s) 299, 328, 487
Tru1I TTAA 3 cut(s) 192, 363, 649
Tru9I TTAA 3 cut(s) 192, 363, 649
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 5, 620
TspDTI ATGAA 2 cut(s) 121, 312
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 1 cut(s) 250
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 350
XspI CTAG 4 cut(s) 24, 126, 474, 558
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.