Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008980

Physical Location & Seq

Genomic Coordinates Reverse (-)

30293600 .. 30297992

Gene Structure 4393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g35090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTGCTCCACCAGCAAGGGCTAGAGCCGATTATGACTACCTCATAAAGCTTCTTCTGATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGTTTCTCAGATGGTTCCTTCACCACTAGTTTCATAACAACCATTGGGATTGATTTTAAGATAAGGACCATTGAACTAGATGGAAAACGAATTAAGCTCCAAATTTGGGATACAGCTGGTCAAGAACGGTTCCGCACAATCACAACTGCTTACTATCGTGGAGCCATGGGGATTTTGCTGGTTTATGATGTTACCGATGAATCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAACAACATGCATCAGATAATGTCAACAAAATACTTGTAGGGAACAAGGCTGACATGGACGAAAGTAAAAGGGCTGTGCCTACCTCTAAGGGCCAAGCACTTGCTGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCAAAGACAAATCTCAACGTGGAGCAAGTTTTCTTCTCAATAGCAAGAGACATTAAGCAACGGCTTGCAGACACTGACACCAGGGCTGAGCCAACCACAATTAAGATCAATCAACCTGAGGCAGGTGGAGCTGGTCAAGCTTCACAAAAGTCAGGTTGCTGCGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

215

Amino Acids

23.67

Weight (kDa)

8.38

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 143	5.2e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	3e-68	Ras family
Roc	PF08477	17 - 131	5.6e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 173	7.9e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09900 AT5G03520
fragaria_vesca	FvH4_3g35090
malus_domestica	MD03G1099100.v1.1 MD11G1113000.v1.1
prunus_persica	Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1
pyrus_communis	pycom03g08140 pycom11g09530
rosa_chinensis	RchiOBHm_Chr5g0063091
rosa_laevigata	RLG00000035603
rosa_multiflora	Rmu_sc0005045.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017560
rosa_rugosa	Rorug05G0354200 Rorug05G0354200
rosa_samantha	Rh5AG414700 Rh5BG429600 Rh5CG453000 Rh5DG443100
rosa_wichuraiana	Rw5G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	590
AccII	CGCG	1 cut(s)	641
AciI	CCGC	2 cut(s)	72, 232
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	205, 599
AgsI	TTSAA	4 cut(s)	173, 310, 341, 470
AhlI	ACTAGT	2 cut(s)	125, 473
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	5 cut(s)	52, 196, 215, 608, 617
AluI	AGCT	5 cut(s)	52, 196, 215, 608, 617
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	2 cut(s)	5, 636
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	2 cut(s)	165, 430
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	165
AxyI	CCTNAGG	1 cut(s)	594
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	2 cut(s)	104, 173
BceAI	ACGGC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	559
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	519
BcuI	ACTAGT	2 cut(s)	125, 473
BfaI	CTAG	4 cut(s)	24, 126, 176, 474
BfuAI	ACCTGC	1 cut(s)	590
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	6, 637
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	2 cut(s)	7, 638
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	165, 430
BmiI	GGNNCC	3 cut(s)	115, 230, 262
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	1 cut(s)	359
Bpu1102I	GCTNAGC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	264, 558
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 599
Bse1I	ACTGG	1 cut(s)	329
Bse21I	CCTNAGG	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	2 cut(s)	264, 558
BseLI	CCNNNNNNNGG	2 cut(s)	205, 599
BseMII	CTCAG	3 cut(s)	120, 555, 585
BseNI	ACTGG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	1 cut(s)	432
BslI	CCNNNNNNNGG	2 cut(s)	205, 599
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	60, 456, 582
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	2 cut(s)	72, 232
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	3 cut(s)	119, 556, 586
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	3 cut(s)	115, 230, 262
BspMI	ACCTGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	264, 558
BssMI	GATC	3 cut(s)	60, 456, 582
BssT1I	CCWWGG	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	106, 426, 564, 594
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	641
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	3 cut(s)	63, 459, 585
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	3 cut(s)	60, 456, 582
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 605, 614
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	557
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	1 cut(s)	623
Bsu36I	CCTNAGG	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	543
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	2 cut(s)	165, 430
CviAII	CATG	3 cut(s)	265, 347, 394
DdeI	CTNAG	4 cut(s)	106, 426, 564, 594
DpnI	GATC	3 cut(s)	62, 458, 584
DpnII	GATC	3 cut(s)	60, 456, 582
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	594
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	268, 350, 397
FaiI	YATR	8 cut(s)	36, 47, 134, 266, 285, 348, 395, 453
FatI	CATG	3 cut(s)	264, 346, 393
Fnu4HI	GCNGC	2 cut(s)	6, 637
Fsp4HI	GCNGC	2 cut(s)	6, 637
FspBI	CTAG	4 cut(s)	24, 126, 176, 474
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	2 cut(s)	6, 637
HaeIII	GGCC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	3 cut(s)	268, 350, 397
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	2 cut(s)	50, 615
HinfI	GANTC	2 cut(s)	299, 328
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	60, 109, 355
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	101, 127
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	3 cut(s)	350, 479, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 605, 614
HpyF3I	CTNAG	4 cut(s)	106, 426, 564, 594
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	268, 350, 397
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	60, 456, 582
LmnI	GCTCC	5 cut(s)	13, 201, 260, 499, 605
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	4 cut(s)	24, 126, 176, 474
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	3 cut(s)	62, 458, 584
MboI	GATC	3 cut(s)	60, 456, 582
MboII	GAAGA	2 cut(s)	47, 502
MluCI	AATT	3 cut(s)	189, 201, 576
MnlI	CCTC	3 cut(s)	53, 433, 589
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	4 cut(s)	156, 192, 531, 579
MspA1I	CMGCKG	2 cut(s)	72, 215
MspR9I	CCNGG	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	559
MvnI	CGCG	1 cut(s)	641
MwoI	GCNNNNNNNGC	3 cut(s)	14, 605, 614
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	3 cut(s)	60, 456, 582
NlaIII	CATG	3 cut(s)	268, 350, 397
NlaIV	GGNNCC	3 cut(s)	115, 230, 262
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	350
PaqCI	CACCTGC	1 cut(s)	590
PfeI	GAWTC	2 cut(s)	299, 328
PkrI	GCNGC	2 cut(s)	7, 638
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	3 cut(s)	115, 230, 262
PspPI	GGNCC	2 cut(s)	165, 430
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	215
SaqAI	TTAA	4 cut(s)	156, 192, 531, 579
SatI	GCNGC	2 cut(s)	6, 637
Sau3AI	GATC	3 cut(s)	60, 456, 582
Sau96I	GGNCC	2 cut(s)	165, 430
ScrFI	CCNGG	1 cut(s)	559
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	165
SpeI	ACTAGT	2 cut(s)	125, 473
Sse9I	AATT	3 cut(s)	189, 201, 576
SsiI	CCGC	2 cut(s)	72, 232
SspMI	CTAG	4 cut(s)	24, 126, 176, 474
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	498
TasI	AATT	3 cut(s)	189, 201, 576
TfiI	GAWTC	2 cut(s)	299, 328
Tru1I	TTAA	4 cut(s)	156, 192, 531, 579
Tru9I	TTAA	4 cut(s)	156, 192, 531, 579
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	2 cut(s)	5, 636
TspDTI	ATGAA	2 cut(s)	121, 312
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	597
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	4 cut(s)	24, 126, 176, 474
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.