Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008980

Physical Location & Seq

Genomic Coordinates Reverse (-)

69380189 .. 69385600

Gene Structure 5412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG429600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGCTCCACCAGCAAGGGCTAGAGCCGATTACGATTACCTCATAAAGCTTCTTTTGATCGGCGACAGCGGTGTTGGTAAGAGTTGCCTTCTTTTGCGCTTCTCAGATGGTTCCTTCACCACTAGTTTCATAACAACCATTGGGATTGATTTTAAGATAAGGACCATTGAACTAGATGGAAAACGGATTAAGCTCCAAATTTGGGATACAGCTGGTCAGGAACGGTTCCGTACAATCACAACTGCTTACTATCGTGGAGCCATGGGGATTTTGCTGGTCTATGATGTTACAGATGAATCATCTTTCAACAACATTAGAAACTGGATTCGCAACATTGAACAGCATGCATCAGATAATGTCAACAAAATACTTGTAGGTAACAAGGCTGACATGGACGAAAGTAAAAGGGCTGTGCCTACCTCTAAGGGCCAAGCACTTGCTGACGAGTATGGGATCAAGTTCTTTGAAACTAGTGCAAAGACGAATCTCAACGTGGAGCAAGTTTTTTTCTCAATAGCACGAGACATTAAGCAACGGCTTGCAGACACTGATACTAGGGCTGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

190

Amino Acids

21.37

Weight (kDa)

7.78

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	16 - 144	3.6e-15	ADP-ribosylation factor family
Ras	PF00071	17 - 178	2e-68	Ras family
Roc	PF08477	17 - 131	4e-35	Ras of Complex, Roc, domain of DAPkinase
GTP_EFTU	PF00009	49 - 173	5.6e-07	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09900 AT5G03520
fragaria_vesca	FvH4_3g35090
malus_domestica	MD03G1099100.v1.1 MD11G1113000.v1.1
prunus_persica	Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1 Prupe.6G083700_v2.0.a1
pyrus_communis	pycom03g08140 pycom11g09530
rosa_chinensis	RchiOBHm_Chr5g0063091
rosa_laevigata	RLG00000035603
rosa_multiflora	Rmu_sc0005045.1_g000040
rosa_roxburghii	Rroxscaffold_1G00017560
rosa_rugosa	Rorug05G0354200 Rorug05G0354200
rosa_samantha	Rh5AG414700 Rh5BG429600 Rh5CG453000 Rh5DG443100
rosa_wichuraiana	Rw5G038970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	1 cut(s)	235
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	173, 310, 341, 470
AhlI	ACTAGT	2 cut(s)	125, 473
AluBI	AGCT	3 cut(s)	52, 196, 215
AluI	AGCT	3 cut(s)	52, 196, 215
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	165, 430
AsuHPI	GGTGA	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	165
BauI	CACGAG	1 cut(s)	522
BbvCI	CCTCAGC	1 cut(s)	564
BccI	CCATC	2 cut(s)	104, 173
BceAI	ACGGC	1 cut(s)	554
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	519
BcuI	ACTAGT	2 cut(s)	125, 473
BfaI	CTAG	5 cut(s)	24, 126, 176, 474, 558
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	165, 430
BmiI	GGNNCC	3 cut(s)	115, 230, 262
BmsI	GCATC	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	564
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMII	CTCAG	2 cut(s)	120, 555
BseNI	ACTGG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	519
BsnI	GGCC	1 cut(s)	432
Bsp143I	GATC	2 cut(s)	60, 456
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	2 cut(s)	119, 556
BspLI	GGNNCC	3 cut(s)	115, 230, 262
BspPI	GGATC	1 cut(s)	464
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	2 cut(s)	60, 456
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	522
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	348, 543
BstDEI	CTNAG	3 cut(s)	106, 426, 564
BstDSI	CCRYGG	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	63, 459
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	2 cut(s)	60, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNSI	RCATGY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	549
Cac8I	GCNNGC	2 cut(s)	348, 543
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	165, 430
Csp6I	GTAC	1 cut(s)	234
CviAII	CATG	3 cut(s)	265, 347, 394
CviQI	GTAC	1 cut(s)	234
DdeI	CTNAG	3 cut(s)	106, 426, 564
DpnI	GATC	2 cut(s)	62, 458
DpnII	GATC	2 cut(s)	60, 456
Eco130I	CCWWGG	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	3 cut(s)	268, 350, 397
FaiI	YATR	8 cut(s)	47, 134, 266, 285, 348, 395, 453, 571
FatI	CATG	3 cut(s)	264, 346, 393
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	5 cut(s)	24, 126, 176, 474, 558
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	3 cut(s)	268, 350, 397
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	3 cut(s)	299, 328, 487
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	2 cut(s)	109, 355
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	2 cut(s)	101, 127
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	3 cut(s)	350, 479, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	106, 426, 564
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	268, 350, 397
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	60, 456
LmnI	GCTCC	4 cut(s)	13, 201, 260, 499
LpnPI	CCDG	5 cut(s)	27, 201, 206, 263, 310
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	5 cut(s)	24, 126, 176, 474, 558
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	2 cut(s)	289, 380
MalI	GATC	2 cut(s)	62, 458
MboI	GATC	2 cut(s)	60, 456
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	3 cut(s)	53, 433, 559
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	3 cut(s)	156, 192, 531
MspA1I	CMGCKG	2 cut(s)	72, 215
MwoI	GCNNNNNNNGC	1 cut(s)	14
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	2 cut(s)	60, 456
NlaIII	CATG	3 cut(s)	268, 350, 397
NlaIV	GGNNCC	3 cut(s)	115, 230, 262
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	350
PaeI	GCATGC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	299, 328, 487
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	3 cut(s)	115, 230, 262
PspPI	GGNCC	2 cut(s)	165, 430
PstNI	CAGNNNCTG	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	235
RsaNI	GTAC	1 cut(s)	234
SaqAI	TTAA	3 cut(s)	156, 192, 531
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	60, 456
Sau96I	GGNCC	2 cut(s)	165, 430
SetI	ASST	8 cut(s)	45, 54, 198, 217, 382, 425, 498, 570
SfaNI	GCATC	1 cut(s)	359
SinI	GGWCC	1 cut(s)	165
SpeI	ACTAGT	2 cut(s)	125, 473
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	5 cut(s)	24, 126, 176, 474, 558
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	498
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	3 cut(s)	299, 328, 487
Tru1I	TTAA	3 cut(s)	156, 192, 531
Tru9I	TTAA	3 cut(s)	156, 192, 531
TscAI	CASTG	1 cut(s)	556
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	121, 312
TspGWI	ACGGA	2 cut(s)	202, 221
TspRI	CASTG	1 cut(s)	556
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	5 cut(s)	24, 126, 176, 474, 558
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.