AT5G03870

Glutaredoxin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1035578 .. 1037370
1793 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03870.1

Sequence Viewer

Length: 1155 bp
ATGGGTTGTGTTTCTTCGAAACTAGGCAAGAAGAAACTCATAAGAGAGATTAGAGTCAACAATGGCGGCGATCACATTGTCTCTCTTACTTCAACTACTTATGGTCATCTCGATCTCGATGAACGAGCAGAGACCTCTCCTAAGTCACTGGAAGTTACTAAAGGCGAAGTCTTTGAATCTGAAATCATACCGAGAAGATCTATTAAGAGAGATGATCCGGAGATTATCAATACTTGGGAGCTTATGGAAGATCTTGAAGATTCAATGCACGTTTCTAATCCACAGAAGATTAGTCCCAAATCTCGTGGTATTTTCGGTAAATCATGGAAGACTCCGGTGAAATCGGTTGTTGAATCTCCGAAGAGAGGAAGTAGTAAGAGATTTGGAGGGAAAGAGAATAATTCGAGAGGTGTGAGTCCGAATCAGATTCTGAAGCCGAAGAACATTCTTGAAACACCGAAGAGAGGTGTAATGCGTTTGAGTTTTCCTCTTAAATCTGAAGAATCTTCGGTGACGGTTACGCAGAGGAGGAAGAGTTATAGTCCAATGTTTGATCCAGATCTTGTGGCTTCTTACGAAAGAGAGTTGTCTCAAGAGAAAGAACAGATCAAGATGGTGATTTCTCCGGTGGTGCACGAGAGCAGAAAAACAGAGAAAACAGAGAGAATTCTTGAGAAGTTCCCAGAGAAATGTCCACCGGGAGGAGAGCACTCTGTGGTGATCTACATAACAACTCTTAGAGGGATACGGAAGACGTTTGAGGATTGTAATGTGGTAAGATCGATATTAGATTCACACGAAGTTCGATTCTCAGAGCGAGATGTGTCGATGCACTCGGTTTTTAAGGAAGAGATCAGGGGCATTATGGGAACGAAACATGTGAAGATACCTGCGGTATTCGTTAAAGGGAGGATGGTAGGAAGTGTTGAGGAAGTGATGAGGTTAGAAGAGGAGGGCAAATTGGGAATATTACTTGAAGGTATTCCGGCGGCGAGGCTTGGAGGCAGTTGCTGCCGTGGATGTGGAGGAATGAGATTTATGATGTGTGTTGTTTGCAACGGAAGCTGCAAGGTTAGGGAGGAAGAGAAGAAGAGTATGGTTAAGTGTTTGAAGTGTAATGAGAATGGTTTGGTTCTATGTCCAATTTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

384

Amino Acids

43.13

Weight (kDa)

9.11

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 239 - 306 9.2e-11 Glutaredoxin
GRXCR1-2_C PF23733 338 - 384 1.6e-16 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03870
fragaria_vesca FvH4_6g18880
malus_domestica MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica Prupe.7G109100_v2.0.a1
pyrus_communis pycom14g02270
rosa_chinensis RchiOBHm_Chr3g0473861
rosa_laevigata RLG00000023977
rosa_multiflora Rmu_sc0002414.1_g000046
rosa_roxburghii Rroxscaffold_6G00407710
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana Rw3G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 898
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 3 cut(s) 66, 893, 989
AclWI GGATC 2 cut(s) 209, 548
AcsI RAATTY 1 cut(s) 666
AcuI CTGAAG 2 cut(s) 452, 519
AdeI CACNNNGTG 1 cut(s) 715
AfiI CCNNNNNNNGG 3 cut(s) 365, 464, 701
AflIII ACRYGT 1 cut(s) 877
AgsI TTSAA 8 cut(s) 93, 176, 257, 264, 353, 452, 977, 1111
AluBI AGCT 2 cut(s) 241, 1065
AluI AGCT 2 cut(s) 241, 1065
Alw21I GWGCWC 2 cut(s) 636, 711
Alw26I GTCTC 3 cut(s) 85, 125, 594
Alw44I GTGCAC 1 cut(s) 632
AlwI GGATC 2 cut(s) 209, 548
AlwNI CAGNNNCTG 2 cut(s) 430, 1011
Aor13HI TCCGGA 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 632
ApeKI GCWGC 2 cut(s) 1011, 1065
ApoI RAATTY 1 cut(s) 666
Asp700I GAANNNNTTC 1 cut(s) 981
AsuC2I CCSGG 1 cut(s) 699
AsuHPI GGTGA 4 cut(s) 349, 523, 628, 730
AsuII TTCGAA 1 cut(s) 17
BaeGI GKGCMC 1 cut(s) 636
BauI CACGAG 2 cut(s) 303, 635
BbsI GAAGAC 2 cut(s) 335, 758
Bbv12I GWGCWC 2 cut(s) 636, 711
BbvI GCAGC 2 cut(s) 998, 1052
BccI CCATC 2 cut(s) 607, 907
BceAI ACGGC 1 cut(s) 999
BciVI GTATCC 1 cut(s) 738
BcnI CCSGG 1 cut(s) 699
BcoDI GTCTC 3 cut(s) 85, 125, 594
BfaI CTAG 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 898
BfuI GTATCC 1 cut(s) 738
BglII AGATCT 3 cut(s) 197, 250, 559
BisI GCNGC 4 cut(s) 67, 990, 1012, 1066
BlsI GCNGC 4 cut(s) 68, 991, 1013, 1067
Bme1390I CCNGG 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 699
BmsI GCATC 1 cut(s) 819
BpiI GAAGAC 2 cut(s) 335, 758
BplI GAGNNNNNCTC 2 cut(s) 472, 504
Bpu14I TTCGAA 1 cut(s) 17
BpuEI CTTGAG 2 cut(s) 576, 692
BpuMI CCSGG 1 cut(s) 699
Bsa29I ATCGAT 1 cut(s) 782
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 1015
BsaWI WCCGGW 3 cut(s) 217, 334, 625
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 464, 701
Bse1I ACTGG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 782
BseDI CCNNGG 1 cut(s) 1015
BseGI GGATG 2 cut(s) 918, 1025
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 365, 464, 701
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 1 cut(s) 153
BseRI GAGGAG 3 cut(s) 541, 717, 965
BseSI GKGCMC 1 cut(s) 636
BseXI GCAGC 2 cut(s) 998, 1052
BshVI ATCGAT 1 cut(s) 782
BsiHKAI GWGCWC 2 cut(s) 636, 711
BsiSI CCGG 5 cut(s) 218, 335, 626, 698, 986
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 365, 464, 701
BsmAI GTCTC 3 cut(s) 85, 125, 594
BsmFI GGGAC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 17
Bsp1286I GDGCHC 2 cut(s) 636, 711
Bsp13I TCCGGA 1 cut(s) 217
BspACI CCGC 3 cut(s) 66, 893, 989
BspCNI CTCAG 1 cut(s) 824
BspDI ATCGAT 1 cut(s) 782
BspEI TCCGGA 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 2 cut(s) 209, 548
BspT104I TTCGAA 1 cut(s) 17
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 1015
BssSI CACGAG 2 cut(s) 303, 635
Bst2BI CACGAG 2 cut(s) 303, 635
Bst4CI ACNGT 1 cut(s) 517
Bst6I CTCTTC 7 cut(s) 356, 455, 527, 843, 942, 1077, 1085
BstAPI GCANNNNNTGC 1 cut(s) 1011
BstBI TTCGAA 1 cut(s) 17
BstDEI CTNAG 3 cut(s) 141, 737, 811
BstDSI CCRYGG 1 cut(s) 1015
BstF5I GGATG 2 cut(s) 918, 1025
BstMAI GTCTC 3 cut(s) 85, 125, 594
BstMWI GCNNNNNNNGC 2 cut(s) 1011, 1062
BstNSI RCATGY 1 cut(s) 881
BstSCI CCNGG 1 cut(s) 697
BstSLI GKGCMC 1 cut(s) 636
BstV1I GCAGC 2 cut(s) 998, 1052
BstV2I GAAGAC 2 cut(s) 335, 758
BstX2I RGATCY 3 cut(s) 197, 250, 559
BstYI RGATCY 3 cut(s) 197, 250, 559
Bsu15I ATCGAT 1 cut(s) 782
BsuI GTATCC 1 cut(s) 738
BsuTUI ATCGAT 1 cut(s) 782
BtgI CCRYGG 1 cut(s) 1015
BtsCI GGATG 2 cut(s) 918, 1025
BtsIMutI CAGTG 1 cut(s) 146
BveI ACCTGC 1 cut(s) 898
CaiI CAGNNNCTG 2 cut(s) 430, 1011
ClaI ATCGAT 1 cut(s) 782
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 2 cut(s) 324, 878
CviJI RGCY 5 cut(s) 241, 436, 569, 997, 1065
CviKI_1 RGCY 5 cut(s) 241, 436, 569, 997, 1065
DdeI CTNAG 3 cut(s) 141, 737, 811
DraIII CACNNNGTG 1 cut(s) 715
Eam1104I CTCTTC 7 cut(s) 356, 455, 527, 843, 942, 1077, 1085
EarI CTCTTC 7 cut(s) 356, 455, 527, 843, 942, 1077, 1085
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 2 cut(s) 452, 519
EcoRI GAATTC 1 cut(s) 666
FaeI CATG 2 cut(s) 327, 881
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 323, 877
Fnu4HI GCNGC 4 cut(s) 67, 990, 1012, 1066
FokI GGATG 2 cut(s) 925, 1032
Fsp4HI GCNGC 4 cut(s) 67, 990, 1012, 1066
FspBI CTAG 1 cut(s) 23
GluI GCNGC 4 cut(s) 67, 990, 1012, 1066
HapII CCGG 5 cut(s) 218, 335, 626, 698, 986
Hin1II CATG 2 cut(s) 327, 881
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HpaII CCGG 5 cut(s) 218, 335, 626, 698, 986
HphI GGTGA 4 cut(s) 349, 523, 628, 730
Hpy166II GTNNAC 3 cut(s) 58, 634, 695
Hpy188I TCNGA 7 cut(s) 181, 360, 420, 426, 432, 499, 814
Hpy8I GTNNAC 3 cut(s) 58, 634, 695
HpyAV CCTTC 1 cut(s) 971
HpyCH4III ACNGT 1 cut(s) 517
HpyCH4IV ACGT 2 cut(s) 270, 755
HpyCH4V TGCA 5 cut(s) 268, 634, 832, 1056, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 1011, 1062
HpyF3I CTNAG 3 cut(s) 141, 737, 811
HpySE526I ACGT 2 cut(s) 270, 755
Hsp92II CATG 2 cut(s) 327, 881
Kpn2I TCCGGA 1 cut(s) 217
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 2 cut(s) 998, 1052
LweI GCATC 1 cut(s) 819
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 270, 755
MaeIII GTNAC 4 cut(s) 144, 154, 511, 517
MflI RGATCY 3 cut(s) 197, 250, 559
MhlI GDGCHC 2 cut(s) 636, 711
MluCI AATT 4 cut(s) 400, 666, 959, 1143
MlyI GAGTC 3 cut(s) 63, 325, 424
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 6 cut(s) 204, 492, 843, 903, 1101, 1153
MspI CCGG 5 cut(s) 218, 335, 626, 698, 986
MspR9I CCNGG 1 cut(s) 699
MwoI GCNNNNNNNGC 2 cut(s) 1011, 1062
NciI CCSGG 1 cut(s) 699
NlaIII CATG 2 cut(s) 327, 881
NmuCI GTSAC 2 cut(s) 144, 511
NspI RCATGY 1 cut(s) 881
NspV TTCGAA 1 cut(s) 17
PciI ACATGT 1 cut(s) 877
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 8 cut(s) 176, 260, 353, 421, 427, 503, 791, 807
PkrI GCNGC 4 cut(s) 68, 991, 1013, 1067
PleI GAGTC 3 cut(s) 62, 325, 423
PpsI GAGTC 3 cut(s) 62, 325, 423
PscI ACATGT 1 cut(s) 877
PstNI CAGNNNCTG 2 cut(s) 430, 1011
PsuI RGATCY 3 cut(s) 197, 250, 559
SaqAI TTAA 6 cut(s) 204, 492, 843, 903, 1101, 1153
SatI GCNGC 4 cut(s) 67, 990, 1012, 1066
SchI GAGTC 3 cut(s) 63, 325, 424
ScrFI CCNGG 1 cut(s) 699
SduI GDGCHC 2 cut(s) 636, 711
SfaNI GCATC 1 cut(s) 819
SfuI TTCGAA 1 cut(s) 17
SmlI CTYRAG 2 cut(s) 591, 671
SmoI CTYRAG 2 cut(s) 591, 671
Sse9I AATT 4 cut(s) 400, 666, 959, 1143
SsiI CCGC 3 cut(s) 66, 893, 989
SspI AATATT 1 cut(s) 969
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 697
TaaI ACNGT 1 cut(s) 517
TaiI ACGT 2 cut(s) 273, 758
TaqI TCGA 7 cut(s) 17, 111, 117, 404, 782, 805, 827
TasI AATT 4 cut(s) 400, 666, 959, 1143
TauI GCSGC 2 cut(s) 69, 992
TfiI GAWTC 8 cut(s) 176, 260, 353, 421, 427, 503, 791, 807
Tru1I TTAA 6 cut(s) 204, 492, 843, 903, 1101, 1153
Tru9I TTAA 6 cut(s) 204, 492, 843, 903, 1101, 1153
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 2 cut(s) 144, 511
TseI GCWGC 2 cut(s) 1011, 1065
Tsp45I GTSAC 2 cut(s) 144, 511
TspDTI ATGAA 1 cut(s) 135
TspGWI ACGGA 2 cut(s) 763, 1074
TspRI CASTG 1 cut(s) 153
VneI GTGCAC 1 cut(s) 632
XapI RAATTY 1 cut(s) 666
XceI RCATGY 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.