FvH4_6g18880

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015184
Physical Location & Seq
Forward (+)
12427958 .. 12429658
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18880.t1

Sequence Viewer

Length: 1143 bp
ATGGGCTGCGTCTCATCCAAACTGTTCAAGAATGATCTCAGAGAAGAAGTAATCATCACCCACGGCGCTCTCAACCACGTCGTCTCCCTCACTTCCAGCACTTATGGCCTTCTCAATCTCGACAAGGACCCTATTGTTGTTTCCGAGGCCACTCTTAAGCAATCTTCTCCGAAAAAGGAAGATCCGGAAGTTATCAATGCGTGGGAACTGATGGAGGGGCTTGAGGAAGCGGTGCCGGTTAAGAGGAGTAGTCCCAAGTCACGATCTGTTCTTCGCGGGTTTGTGGATTTCGATGCGAGGAGTCCGTTGAAGATGCTGAACCAGTTGGGATCGCCGATGAAGGGGAGGCGATTTGGGGGGAAGGAGAATAAGGGGAGAGGGTATAGTCCCAAAGGTTGGGTGAAATCGAATATTGGGTCGGAGAATTCTTGCAAGAAGGCGCTGAATATGAGTCCGGCGGTGAAAGGGTCTCCGGTTTCTGCACAAAGGAGGAGTTTCGGGAGTGATTCGTCGAGGAGGAAGAGTATTAGTCCCCTGTTTGATCCAGAACTGGTTGCTTCTTATGAGAAGGAAATGTTTGAAGAAGAAGAGCAGATCAAGAGGGTGGTCTTGCCTTCGCCCAAGACACGAAAGATGAGGTATTGTACCCGAGATTCTGAGTCTATGCTGAAGTTGTTTGAGAAGAAATGCCCTCCCGGTGGCGAAAATGCGGTTGTTATTTACACTACTACGTTGAGAGGGATTAGGAAGACATTTGAGGATTGCAACAATGTGAGGTCAATTGTGGAGTCACACCTTGTTCGCGTGCTCGAAAGGGATATATCGATGGATTCGGGGTTTAAGGAGGAGATAAGGGGGCTAATGGGGAGCAAAGAGGTTAGGGTACCGCTTGTGTTTGTGAAGGGGAGGTTGATTGGCGGAGCTGATGAGATTGTGAAGTTGGAGGAGGAAGGTAAGCTTGGGGTTTTGTTCGATGGGATCCCGAAAGCGCTTGTTGGGTGCCAAGGTTGTGCTGGAATGAGGTTTGTGATGTGTGTGGAGTGCAATGGAAGCTGCAAGGTTTTGGATGAGGCGCAAAAGAAGATGGTCAAATGTGGTGAGTGCAATGAGAATGGTTTGATTCATTGCCCTCTTTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

381

Amino Acids

42.04

Weight (kDa)

8.92

Isoelectric Point (pI)

59.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 238 - 305 2.1e-09 Glutaredoxin
GRXCR1-2_C PF23733 334 - 380 2.7e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03870
fragaria_vesca FvH4_6g18880
malus_domestica MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica Prupe.7G109100_v2.0.a1
pyrus_communis pycom14g02270
rosa_chinensis RchiOBHm_Chr3g0473861
rosa_laevigata RLG00000023977
rosa_multiflora Rmu_sc0002414.1_g000046
rosa_roxburghii Rroxscaffold_6G00407710
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana Rw3G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 883
AccB1I GGYRCC 3 cut(s) 232, 883, 999
AccB7I CCANNNNNTGG 1 cut(s) 396
AccII CGCG 2 cut(s) 276, 804
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 6 cut(s) 230, 276, 458, 710, 887, 918
AclWI GGATC 5 cut(s) 176, 337, 536, 973, 986
AcsI RAATTY 1 cut(s) 424
AcuI CTGAAG 1 cut(s) 689
AfaI GTAC 2 cut(s) 646, 885
AfeI AGCGCT 1 cut(s) 990
AfiI CCNNNNNNNGG 3 cut(s) 341, 396, 698
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 3 cut(s) 28, 310, 581
AjiI CACGTC 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 942, 974
AluBI AGCT 3 cut(s) 923, 958, 1053
AluI AGCT 3 cut(s) 923, 958, 1053
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 3 cut(s) 16, 88, 474
AlwI GGATC 5 cut(s) 176, 337, 536, 973, 986
Ama87I CYCGRG 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 184
Aor51HI AGCGCT 1 cut(s) 990
AoxI GGCC 2 cut(s) 106, 147
ApeKI GCWGC 2 cut(s) 6, 1053
ApoI RAATTY 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
Asp718I GGTACC 1 cut(s) 883
AspLEI GCGC 4 cut(s) 68, 442, 991, 1075
AspS9I GGNCC 1 cut(s) 127
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 4 cut(s) 49, 412, 472, 1109
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 978
BanI GGYRCC 3 cut(s) 232, 883, 999
BbsI GAAGAC 1 cut(s) 755
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 1 cut(s) 1040
BccI CCATC 4 cut(s) 205, 820, 968, 1078
BceAI ACGGC 1 cut(s) 79
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 3 cut(s) 16, 88, 474
BfoI RGCGCY 3 cut(s) 69, 443, 992
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 2 cut(s) 7, 1054
BlsI GCNGC 2 cut(s) 8, 1055
Bme1390I CCNGG 1 cut(s) 696
Bme18I GGWCC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 648
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 5 cut(s) 129, 234, 885, 980, 1001
BmrFI CCNGG 1 cut(s) 696
BmsI GCATC 2 cut(s) 283, 303
BpiI GAAGAC 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 696
Bsa29I ATCGAT 1 cut(s) 824
BsaI GGTCTC 1 cut(s) 474
BsaJI CCNNGG 3 cut(s) 61, 144, 1003
BsaWI WCCGGW 2 cut(s) 184, 472
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 396, 698
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 322, 555
Bse3DI GCAATG 3 cut(s) 1051, 1111, 1123
BseAI TCCGGA 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 824
BseDI CCNNGG 3 cut(s) 61, 144, 1003
BseGI GGATG 2 cut(s) 14, 1072
BseLI CCNNNNNNNGG 3 cut(s) 341, 396, 698
BseMI GCAATG 3 cut(s) 1051, 1111, 1123
BseMII CTCAG 2 cut(s) 52, 648
BseNI ACTGG 2 cut(s) 322, 555
BseRI GAGGAG 6 cut(s) 259, 313, 505, 529, 860, 959
BseXI GCAGC 1 cut(s) 1040
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 2 cut(s) 276, 804
BshFI GGCC 2 cut(s) 108, 149
BshNI GGYRCC 3 cut(s) 232, 883, 999
BshVI ATCGAT 1 cut(s) 824
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 5 cut(s) 185, 236, 455, 473, 696
BslFI GGGAC 3 cut(s) 237, 372, 516
BslI CCNNNNNNNGG 3 cut(s) 341, 396, 698
BsmAI GTCTC 3 cut(s) 16, 88, 474
BsmBI CGTCTC 2 cut(s) 16, 88
BsmFI GGGAC 3 cut(s) 237, 372, 516
BsnI GGCC 2 cut(s) 108, 149
Bso31I GGTCTC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 648
Bsp1286I GDGCHC 1 cut(s) 810
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
BspACI CCGC 6 cut(s) 230, 276, 458, 710, 887, 918
BspANI GGCC 2 cut(s) 108, 149
BspCNI CTCAG 2 cut(s) 51, 649
BspDI ATCGAT 1 cut(s) 824
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 2 cut(s) 276, 804
BspLI GGNNCC 5 cut(s) 129, 234, 885, 980, 1001
BspPI GGATC 5 cut(s) 176, 337, 536, 973, 986
BspQI GCTCTTC 1 cut(s) 582
BspT107I GGYRCC 3 cut(s) 232, 883, 999
BspTI CTTAAG 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 474
BsrDI GCAATG 3 cut(s) 1051, 1111, 1123
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 322, 555
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 61, 144, 1003
BssMI GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
BssT1I CCWWGG 1 cut(s) 1003
Bst4CI ACNGT 1 cut(s) 24
Bst6I CTCTTC 2 cut(s) 515, 582
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 806
BstDEI CTNAG 2 cut(s) 38, 657
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 14, 1072
BstFNI CGCG 2 cut(s) 276, 804
BstH2I RGCGCY 3 cut(s) 69, 443, 992
BstHHI GCGC 4 cut(s) 68, 442, 991, 1075
BstKTI GATC 7 cut(s) 37, 184, 266, 332, 544, 597, 981
BstMAI GTCTC 3 cut(s) 16, 88, 474
BstMBI GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
BstMWI GCNNNNNNNGC 2 cut(s) 105, 1050
BstSCI CCNGG 1 cut(s) 694
BstUI CGCG 2 cut(s) 276, 804
BstV1I GCAGC 1 cut(s) 1040
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 2 cut(s) 181, 978
BstYI RGATCY 2 cut(s) 181, 978
Bsu15I ATCGAT 1 cut(s) 824
BsuRI GGCC 2 cut(s) 108, 149
BsuTUI ATCGAT 1 cut(s) 824
BtgI CCRYGG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 14, 1072
Cac8I GCNNGC 1 cut(s) 806
CfoI GCGC 4 cut(s) 68, 442, 991, 1075
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 127
ClaI ATCGAT 1 cut(s) 824
Csp6I GTAC 2 cut(s) 645, 884
CviJI RGCY 8 cut(s) 6, 108, 149, 220, 859, 923, 958, 1053
CviKI_1 RGCY 8 cut(s) 6, 108, 149, 220, 859, 923, 958, 1053
CviQI GTAC 2 cut(s) 645, 884
DdeI CTNAG 2 cut(s) 38, 657
DpnI GATC 7 cut(s) 36, 183, 265, 331, 543, 596, 980
DpnII GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
Eam1104I CTCTTC 2 cut(s) 515, 582
EarI CTCTTC 2 cut(s) 515, 582
EciI GGCGGA 1 cut(s) 933
Eco130I CCWWGG 1 cut(s) 1003
Eco31I GGTCTC 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 127
Eco47III AGCGCT 1 cut(s) 990
Eco57I CTGAAG 1 cut(s) 689
Eco88I CYCGRG 1 cut(s) 648
EcoO109I RGGNCCY 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 1003
Esp3I CGTCTC 2 cut(s) 16, 88
FaiI YATR 6 cut(s) 105, 384, 449, 564, 665, 821
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 3 cut(s) 237, 372, 516
FauI CCCGC 1 cut(s) 269
Fnu4HI GCNGC 2 cut(s) 7, 1054
FokI GGATG 1 cut(s) 1079
Fsp4HI GCNGC 2 cut(s) 7, 1054
GlaI GCGC 4 cut(s) 67, 441, 990, 1074
GluI GCNGC 2 cut(s) 7, 1054
HaeII RGCGCY 3 cut(s) 69, 443, 992
HaeIII GGCC 2 cut(s) 108, 149
HapII CCGG 5 cut(s) 185, 236, 455, 473, 696
HhaI GCGC 4 cut(s) 68, 442, 991, 1075
Hin6I GCGC 4 cut(s) 66, 440, 989, 1073
HinP1I GCGC 4 cut(s) 66, 440, 989, 1073
HindIII AAGCTT 1 cut(s) 956
HinfI GANTC 8 cut(s) 301, 451, 506, 653, 659, 788, 830, 1120
HpaII CCGG 5 cut(s) 185, 236, 455, 473, 696
HphI GGTGA 4 cut(s) 49, 412, 472, 1109
Hpy188I TCNGA 5 cut(s) 41, 145, 171, 421, 658
Hpy188III TCNNGA 8 cut(s) 28, 119, 185, 261, 499, 545, 598, 982
Hpy99I CGWCG 2 cut(s) 83, 514
HpyAV CCTTC 8 cut(s) 119, 334, 355, 430, 562, 624, 895, 944
HpyCH4III ACNGT 1 cut(s) 24
HpyCH4IV ACGT 2 cut(s) 78, 731
HpyCH4V TGCA 6 cut(s) 432, 482, 765, 1044, 1056, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 1050
HpyF3I CTNAG 2 cut(s) 38, 657
HpySE526I ACGT 2 cut(s) 78, 731
HspAI GCGC 4 cut(s) 66, 440, 989, 1073
Kpn2I TCCGGA 1 cut(s) 184
KpnI GGTACC 1 cut(s) 887
Kzo9I GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
LguI GCTCTTC 1 cut(s) 582
LmnI GCTCC 2 cut(s) 867, 920
Lsp1109I GCAGC 1 cut(s) 1040
LweI GCATC 2 cut(s) 283, 303
MaeII ACGT 2 cut(s) 78, 731
MaeIII GTNAC 2 cut(s) 258, 789
MalI GATC 7 cut(s) 36, 183, 265, 331, 543, 596, 980
MboI GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 2 cut(s) 181, 978
MhlI GDGCHC 1 cut(s) 810
MluCI AATT 2 cut(s) 424, 780
MlyI GAGTC 4 cut(s) 310, 460, 668, 797
MmeI TCCRAC 2 cut(s) 399, 921
MroI TCCGGA 1 cut(s) 184
MseI TTAA 3 cut(s) 156, 240, 840
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 5 cut(s) 185, 236, 455, 473, 696
MspR9I CCNGG 1 cut(s) 696
MunI CAATTG 1 cut(s) 780
MvnI CGCG 2 cut(s) 276, 804
MwoI GCNNNNNNNGC 2 cut(s) 105, 1050
NciI CCSGG 1 cut(s) 696
NdeII GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
NlaIV GGNNCC 5 cut(s) 129, 234, 885, 980, 1001
NmuCI GTSAC 2 cut(s) 258, 789
PciSI GCTCTTC 1 cut(s) 582
PfeI GAWTC 4 cut(s) 506, 653, 830, 1120
PflMI CCANNNNNTGG 1 cut(s) 396
PkrI GCNGC 2 cut(s) 8, 1055
PleI GAGTC 4 cut(s) 309, 459, 667, 796
PpsI GAGTC 4 cut(s) 309, 459, 667, 796
PpuMI RGGWCCY 1 cut(s) 127
Psp5II RGGWCCY 1 cut(s) 127
PspN4I GGNNCC 5 cut(s) 129, 234, 885, 980, 1001
PspPI GGNCC 1 cut(s) 127
PspPPI RGGWCCY 1 cut(s) 127
PsuI RGATCY 2 cut(s) 181, 978
RsaI GTAC 2 cut(s) 646, 885
RsaNI GTAC 2 cut(s) 645, 884
SapI GCTCTTC 1 cut(s) 582
SaqAI TTAA 3 cut(s) 156, 240, 840
SatI GCNGC 2 cut(s) 7, 1054
Sau3AI GATC 7 cut(s) 34, 181, 263, 329, 541, 594, 978
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 4 cut(s) 310, 460, 668, 797
ScrFI CCNGG 1 cut(s) 696
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 2 cut(s) 283, 303
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 155, 221
SmoI CTYRAG 2 cut(s) 155, 221
Sse9I AATT 2 cut(s) 424, 780
SsiI CCGC 6 cut(s) 230, 276, 458, 710, 887, 918
SspI AATATT 1 cut(s) 412
StyD4I CCNGG 1 cut(s) 694
StyI CCWWGG 1 cut(s) 1003
TaaI ACNGT 1 cut(s) 24
TaiI ACGT 2 cut(s) 81, 734
TaqI TCGA 7 cut(s) 120, 291, 407, 512, 810, 824, 972
TasI AATT 2 cut(s) 424, 780
TfiI GAWTC 4 cut(s) 506, 653, 830, 1120
Tru1I TTAA 3 cut(s) 156, 240, 840
Tru9I TTAA 3 cut(s) 156, 240, 840
TseFI GTSAC 2 cut(s) 258, 789
TseI GCWGC 2 cut(s) 6, 1053
Tsp45I GTSAC 2 cut(s) 258, 789
TspDTI ATGAA 2 cut(s) 353, 1112
TspGWI ACGGA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 396
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 1 cut(s) 424
XcmI CCANNNNNNNNNTGG 1 cut(s) 1010
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.