Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015184

Physical Location & Seq

Genomic Coordinates Forward (+)

2148225 .. 2149415

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1023700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGGCTGCGCTTCATCGAAACTGTTCAAGAAAGAGGATAACAATGGCGGCGGCGAATACGTCATCAACCACGTCGTCTCTCTCACTTCCAGCACTTACGGCGTTCTGAACCTCGAAAACGGCCAACAACCCACCAAAGACTGCGTTGCGGAGAGCAAGAGGGCCGCGATGAAATCTTCGCCGCCCCGGGAAGATCCGGAGGTTATCAACGCCTGGGAACTCATGGAGGGGCTCGAAGAAGGAATACCCATCTCGAATCCGACGAAGAAGAGCCCGAAATCGAGTGCGCTACTTCGAGGGTTTGCAGATTTCGGTTCGAGGACTCCGTTCAAGTTGTTGAGTCAGATCGGGTCGCCGATGAAATCGAAGCGATTTGGAGGGAAGGAGAATAATAAAGAGAGAGGGGTGAATGTTAATGTGTTGGGTTATAGCCCGAAACAGGTTCTGAAACCGAACAATGGCGGCGAAAATTCGTGTAAGAAGATGTTGAATTGGAGCCCTGGAGTAAAAGGGTCGCCCGTTGTGGCAAAAAGGCAGAGCTTTGACAGTGATTTGTCTCGACGGAGGAGTTTAAGTCCCCTGTTTGATCCCGAACTCGTTGCATCTTACGAGAAGGAAATGTCTGAGGAGGAAGAGCAGATCAAGAGGATGGTTCCGCTGTCACCAAAGCCCCGTAAATTGAGAATTTCTTCCAAGGACTTGGAGTCTATGCTGCAATTATTCGAGAAAAAATGCCCACCGGGCGGCGAGAATGCAGTTGTTGTGTACACAACTACACTGAGAGGAATTAGGAAGACTTTTGAGGATTGCAACAATTTGAGGTCCATTGTGGAGTCACACCTCGTTCATGTTCTCGAGCGTGATATATCGATGGATTCTGGTTTTAAGGAGGAGATAAGGAGGCTAATGGGGACCAAGGAGGTTAAAGTTCCACTTGTATTTGTGAAGGGGAGGCTGATTGGCGGCGCCGACGAGGTGGTGAAGTTGGAGGAGGAAGGGAAGCTTGGGATTCTGTTTGATGGGATTCCGAGGGCGGTCATCGGATGCCAAGGCTGTGCCGGAATGAGATTTGTGATGTGCATGGTTTGCAATGGAAGCTGCAAAGTTTTGGATGAGGTGAAAAAGAAGATGGTGAAATGCGGCGAGTGCAATGAGAACGGTTTGATTCACTGTCCACTTTGTTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

397

Amino Acids

43.67

Weight (kDa)

8.88

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	253 - 320	1.5e-09	Glutaredoxin
GRXCR1-2_C	PF23733	349 - 395	1.2e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03870
fragaria_vesca	FvH4_6g18880
malus_domestica	MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica	Prupe.7G109100_v2.0.a1
pyrus_communis	pycom14g02270
rosa_chinensis	RchiOBHm_Chr3g0473861
rosa_laevigata	RLG00000023977
rosa_multiflora	Rmu_sc0002414.1_g000046
rosa_roxburghii	Rroxscaffold_6G00407710
rosa_rugosa	Rorug03G0136100
rosa_samantha	Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana	Rw3G017070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	965
AccII	CGCG	1 cut(s)	167
AccIII	TCCGGA	1 cut(s)	196
AclWI	GGATC	2 cut(s)	188, 581
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	469, 684
AcyI	GRCGYC	1 cut(s)	966
AfaI	GTAC	1 cut(s)	767
AfiI	CCNNNNNNNGG	3 cut(s)	439, 458, 743
AgsI	TTSAA	3 cut(s)	28, 331, 490
AhdI	GACNNNNNGTC	1 cut(s)	703
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	212, 499
AjuI	GAANNNNNNNTTGG	2 cut(s)	987, 1019
AluBI	AGCT	3 cut(s)	540, 1003, 1098
AluI	AGCT	3 cut(s)	540, 1003, 1098
Alw26I	GTCTC	2 cut(s)	82, 561
AlwI	GGATC	2 cut(s)	188, 581
AlwNI	CAGNNNCTG	1 cut(s)	445
Ama87I	CYCGRG	2 cut(s)	186, 854
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	2 cut(s)	121, 162
ApeKI	GCWGC	4 cut(s)	6, 712, 1098, 1185
ApoI	RAATTY	2 cut(s)	469, 684
Asp700I	GAANNNNTTC	2 cut(s)	23, 688
AspLEI	GCGC	3 cut(s)	11, 289, 968
AspS9I	GGNCC	3 cut(s)	162, 822, 912
AsuC2I	CCSGG	3 cut(s)	187, 188, 741
AsuHPI	GGTGA	5 cut(s)	418, 654, 991, 1129, 1144
AvaI	CYCGRG	2 cut(s)	186, 854
AvaII	GGWCC	2 cut(s)	822, 912
BanI	GGYRCC	1 cut(s)	965
BanII	GRGCYC	3 cut(s)	234, 275, 500
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BbsI	GAAGAC	1 cut(s)	800
BbvI	GCAGC	3 cut(s)	699, 1085, 1172
BccI	CCATC	5 cut(s)	257, 643, 865, 1013, 1123
BceAI	ACGGC	2 cut(s)	115, 136
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	2 cut(s)	214, 501
BcnI	CCSGG	3 cut(s)	187, 188, 741
BcoDI	GTCTC	2 cut(s)	82, 561
BfoI	RGCGCY	1 cut(s)	969
BglI	GCCNNNNNGGC	1 cut(s)	741
Bme1390I	CCNGG	5 cut(s)	187, 188, 214, 501, 741
Bme18I	GGWCC	2 cut(s)	822, 912
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	2 cut(s)	186, 854
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	3 cut(s)	162, 822, 912
BmiI	GGNNCC	4 cut(s)	497, 654, 913, 967
BmrFI	CCNGG	5 cut(s)	187, 188, 214, 501, 741
BmsI	GCATC	2 cut(s)	611, 1034
BpiI	GAAGAC	1 cut(s)	800
BpmI	CTGGAG	1 cut(s)	522
BpuMI	CCSGG	3 cut(s)	187, 188, 741
Bsa29I	ATCGAT	1 cut(s)	869
BsaHI	GRCGYC	1 cut(s)	966
BsaJI	CCNNGG	8 cut(s)	185, 186, 213, 499, 693, 915, 1028, 1048
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	559, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	439, 458, 743
Bse3DI	GCAATG	2 cut(s)	1096, 1156
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	214, 501
BseCI	ATCGAT	1 cut(s)	869
BseDI	CCNNGG	8 cut(s)	185, 186, 213, 499, 693, 915, 1028, 1048
BseGI	GGATG	3 cut(s)	654, 1049, 1117
BseLI	CCNNNNNNNGG	3 cut(s)	439, 458, 743
BseMI	GCAATG	2 cut(s)	1096, 1156
BseMII	CTCAG	2 cut(s)	615, 770
BseRI	GAGGAG	4 cut(s)	580, 641, 905, 1004
BseXI	GCAGC	3 cut(s)	699, 1085, 1172
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	123, 164
BshNI	GGYRCC	1 cut(s)	965
BshVI	ATCGAT	1 cut(s)	869
BsiHKCI	CYCGRG	2 cut(s)	186, 854
BsiSI	CCGG	4 cut(s)	187, 197, 740, 1059
BslFI	GGGAC	2 cut(s)	561, 925
BslI	CCNNNNNNNGG	3 cut(s)	439, 458, 743
BsmAI	GTCTC	2 cut(s)	82, 561
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	561, 925
BsmI	GAATGC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	123, 164
BsoBI	CYCGRG	2 cut(s)	186, 854
Bsp1286I	GDGCHC	3 cut(s)	234, 275, 500
Bsp13I	TCCGGA	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	765
Bsp143I	GATC	4 cut(s)	193, 345, 586, 639
BspANI	GGCC	2 cut(s)	123, 164
BspCNI	CTCAG	2 cut(s)	616, 771
BspDI	ATCGAT	1 cut(s)	869
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	4 cut(s)	497, 654, 913, 967
BspPI	GGATC	2 cut(s)	188, 581
BspQI	GCTCTTC	2 cut(s)	263, 627
BspT107I	GGYRCC	1 cut(s)	965
BsrDI	GCAATG	2 cut(s)	1096, 1156
BsrGI	TGTACA	1 cut(s)	765
BssECI	CCNNGG	8 cut(s)	185, 186, 213, 499, 693, 915, 1028, 1048
BssMI	GATC	4 cut(s)	193, 345, 586, 639
BssNI	GRCGYC	1 cut(s)	966
BssT1I	CCWWGG	3 cut(s)	693, 915, 1048
Bst2UI	CCWGG	2 cut(s)	214, 501
Bst4CI	ACNGT	4 cut(s)	24, 548, 1160, 1172
Bst6I	CTCTTC	2 cut(s)	263, 627
BstACI	GRCGYC	1 cut(s)	966
BstAPI	GCANNNNNTGC	1 cut(s)	1086
BstAUI	TGTACA	1 cut(s)	765
BstDEI	CTNAG	2 cut(s)	624, 779
BstF5I	GGATG	3 cut(s)	654, 1049, 1117
BstFNI	CGCG	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	3 cut(s)	11, 289, 968
BstKTI	GATC	4 cut(s)	196, 348, 589, 642
BstMAI	GTCTC	2 cut(s)	82, 561
BstMBI	GATC	4 cut(s)	193, 345, 586, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 741, 1086, 1095, 1146
BstNI	CCWGG	2 cut(s)	214, 501
BstSCI	CCNGG	5 cut(s)	185, 186, 212, 499, 739
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	699, 1085, 1172
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	193
Bsu15I	ATCGAT	1 cut(s)	869
BsuRI	GGCC	2 cut(s)	123, 164
BsuTUI	ATCGAT	1 cut(s)	869
BtgZI	GCGATG	1 cut(s)	182
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	3 cut(s)	654, 1049, 1117
BtsIMutI	CAGTG	3 cut(s)	553, 776, 1168
CaiI	CAGNNNCTG	1 cut(s)	445
CfoI	GCGC	3 cut(s)	11, 289, 968
Cfr13I	GGNCC	3 cut(s)	162, 822, 912
Cfr9I	CCCGGG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	869
Csp6I	GTAC	1 cut(s)	766
CviAII	CATG	3 cut(s)	223, 848, 1081
CviQI	GTAC	1 cut(s)	766
DdeI	CTNAG	2 cut(s)	624, 779
DinI	GGCGCC	1 cut(s)	967
DpnI	GATC	4 cut(s)	195, 347, 588, 641
DpnII	GATC	4 cut(s)	193, 345, 586, 639
DriI	GACNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	263, 627
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	2 cut(s)	263, 627
Eco130I	CCWWGG	3 cut(s)	693, 915, 1048
Eco24I	GRGCYC	3 cut(s)	234, 275, 500
Eco47I	GGWCC	2 cut(s)	822, 912
Eco88I	CYCGRG	2 cut(s)	186, 854
EcoRII	CCWGG	2 cut(s)	212, 499
EcoT14I	CCWWGG	3 cut(s)	693, 915, 1048
EcoT38I	GRGCYC	3 cut(s)	234, 275, 500
EgeI	GGCGCC	1 cut(s)	967
EheI	GGCGCC	1 cut(s)	967
ErhI	CCWWGG	3 cut(s)	693, 915, 1048
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	3 cut(s)	226, 851, 1084
FaiI	YATR	6 cut(s)	224, 429, 710, 849, 866, 1082
FalI	AAGNNNNNCTT	4 cut(s)	918, 950, 987, 1019
FaqI	GGGAC	2 cut(s)	561, 925
FatI	CATG	3 cut(s)	222, 847, 1080
FokI	GGATG	3 cut(s)	661, 1056, 1124
FriOI	GRGCYC	3 cut(s)	234, 275, 500
GlaI	GCGC	3 cut(s)	10, 288, 967
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	969
HaeIII	GGCC	2 cut(s)	123, 164
HapII	CCGG	4 cut(s)	187, 197, 740, 1059
HhaI	GCGC	3 cut(s)	11, 289, 968
Hin1I	GRCGYC	1 cut(s)	966
Hin1II	CATG	3 cut(s)	226, 851, 1084
Hin6I	GCGC	3 cut(s)	9, 287, 966
HinP1I	GCGC	3 cut(s)	9, 287, 966
HindIII	AAGCTT	1 cut(s)	1001
HinfI	GANTC	9 cut(s)	256, 322, 340, 704, 833, 875, 1009, 1024, 1165
HpaII	CCGG	4 cut(s)	187, 197, 740, 1059
HphI	GGTGA	5 cut(s)	418, 654, 991, 1129, 1144
Hpy166II	GTNNAC	3 cut(s)	766, 768, 1175
Hpy188I	TCNGA	7 cut(s)	108, 261, 345, 447, 625, 1029, 1043
Hpy188III	TCNNGA	8 cut(s)	28, 197, 253, 558, 590, 643, 724, 854
Hpy8I	GTNNAC	3 cut(s)	766, 768, 1175
Hpy99I	CGWCG	4 cut(s)	77, 265, 564, 974
HpyAV	CCTTC	5 cut(s)	233, 376, 607, 940, 989
HpyCH4III	ACNGT	4 cut(s)	24, 548, 1160, 1172
HpyCH4IV	ACGT	2 cut(s)	60, 72
HpyCH4V	TGCA	9 cut(s)	305, 602, 715, 755, 810, 1080, 1089, 1101, 1149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 741, 1086, 1095, 1146
HpyF3I	CTNAG	2 cut(s)	624, 779
HpySE526I	ACGT	2 cut(s)	60, 72
Hsp92I	GRCGYC	1 cut(s)	966
Hsp92II	CATG	3 cut(s)	226, 851, 1084
HspAI	GCGC	3 cut(s)	9, 287, 966
KasI	GGCGCC	1 cut(s)	965
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	193, 345, 586, 639
LguI	GCTCTTC	2 cut(s)	263, 627
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	3 cut(s)	699, 1085, 1172
LweI	GCATC	2 cut(s)	611, 1034
MaeII	ACGT	2 cut(s)	60, 72
MaeIII	GTNAC	2 cut(s)	660, 834
MalI	GATC	4 cut(s)	195, 347, 588, 641
MboI	GATC	4 cut(s)	193, 345, 586, 639
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	3 cut(s)	234, 275, 500
MluCI	AATT	7 cut(s)	469, 490, 677, 684, 716, 786, 814
Mly113I	GGCGCC	1 cut(s)	966
MlyI	GAGTC	4 cut(s)	316, 349, 713, 842
MmeI	TCCRAC	2 cut(s)	284, 966
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	23, 688
MseI	TTAA	4 cut(s)	414, 572, 885, 924
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	4 cut(s)	187, 197, 740, 1059
MspR9I	CCNGG	5 cut(s)	187, 188, 214, 501, 741
Mva1269I	GAATGC	1 cut(s)	757
MvaI	CCWGG	2 cut(s)	214, 501
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	5 cut(s)	99, 741, 1086, 1095, 1146
NarI	GGCGCC	1 cut(s)	966
NciI	CCSGG	3 cut(s)	187, 188, 741
NdeII	GATC	4 cut(s)	193, 345, 586, 639
NlaIII	CATG	3 cut(s)	226, 851, 1084
NlaIV	GGNNCC	4 cut(s)	497, 654, 913, 967
NmuCI	GTSAC	2 cut(s)	660, 834
PaeR7I	CTCGAG	1 cut(s)	854
PciSI	GCTCTTC	2 cut(s)	263, 627
PcsI	WCGNNNNNNNCGW	2 cut(s)	260, 323
PctI	GAATGC	1 cut(s)	757
PdmI	GAANNNNTTC	2 cut(s)	23, 688
PfeI	GAWTC	5 cut(s)	256, 875, 1009, 1024, 1165
PleI	GAGTC	4 cut(s)	316, 348, 712, 841
PluTI	GGCGCC	1 cut(s)	969
PpsI	GAGTC	4 cut(s)	316, 348, 712, 841
Psp6I	CCWGG	2 cut(s)	212, 499
PspGI	CCWGG	2 cut(s)	212, 499
PspN4I	GGNNCC	4 cut(s)	497, 654, 913, 967
PspPI	GGNCC	3 cut(s)	162, 822, 912
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	1 cut(s)	767
RsaNI	GTAC	1 cut(s)	766
SapI	GCTCTTC	2 cut(s)	263, 627
SaqAI	TTAA	4 cut(s)	414, 572, 885, 924
Sau3AI	GATC	4 cut(s)	193, 345, 586, 639
Sau96I	GGNCC	3 cut(s)	162, 822, 912
SchI	GAGTC	4 cut(s)	316, 349, 713, 842
ScrFI	CCNGG	5 cut(s)	187, 188, 214, 501, 741
SduI	GDGCHC	3 cut(s)	234, 275, 500
SfaNI	GCATC	2 cut(s)	611, 1034
SfoI	GGCGCC	1 cut(s)	967
Sfr274I	CTCGAG	1 cut(s)	854
SinI	GGWCC	2 cut(s)	822, 912
SlaI	CTCGAG	1 cut(s)	854
SmaI	CCCGGG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	7 cut(s)	469, 490, 677, 684, 716, 786, 814
SspDI	GGCGCC	1 cut(s)	965
StyD4I	CCNGG	5 cut(s)	185, 186, 212, 499, 739
StyI	CCWWGG	3 cut(s)	693, 915, 1048
TaaI	ACNGT	4 cut(s)	24, 548, 1160, 1172
TaiI	ACGT	2 cut(s)	63, 75
TasI	AATT	7 cut(s)	469, 490, 677, 684, 716, 786, 814
TatI	WGTACW	1 cut(s)	765
TauI	GCSGC	8 cut(s)	51, 54, 167, 184, 465, 747, 966, 1143
TfiI	GAWTC	5 cut(s)	256, 875, 1009, 1024, 1165
Tru1I	TTAA	4 cut(s)	414, 572, 885, 924
Tru9I	TTAA	4 cut(s)	414, 572, 885, 924
TscAI	CASTG	3 cut(s)	553, 783, 1175
TseFI	GTSAC	2 cut(s)	660, 834
TseI	GCWGC	4 cut(s)	6, 712, 1098, 1185
Tsp45I	GTSAC	2 cut(s)	660, 834
TspDTI	ATGAA	3 cut(s)	185, 374, 836
TspGWI	ACGGA	2 cut(s)	315, 577
TspMI	CCCGGG	1 cut(s)	186
TspRI	CASTG	3 cut(s)	553, 783, 1175
VpaK11BI	GGWCC	2 cut(s)	822, 912
XapI	RAATTY	2 cut(s)	469, 684
XhoI	CTCGAG	1 cut(s)	854
XmaI	CCCGGG	1 cut(s)	186
XmnI	GAANNNNTTC	2 cut(s)	23, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.