Rroxscaffold_6G00407710

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015184
Physical Location & Seq
Reverse (-)
30362743 .. 30364489
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407710.1

Sequence Viewer

Length: 1161 bp
ATGGGCTGCGTATCTTCCAAACTGTTCAAGAACGATTTCAAAGAAGAGGTCACCATCACCCACGGCGCACAGTGCCTCAACCACGTCGTCTCCCTCACTTCCAGCACTTACGGCCTTCTAAATCTCGACAATGACCCACCGGTTGTTTCCGAGACTCATAACTTTAAGAAATGTTCCCCGAAAAGGGAAGATCCGGAGGTTATCAATGCTTGGGAACTGATGGAGGGGCTGGAGGAAGCGGTGCCGGTCAAGAGGAGTCCCAAGTCGCGCTCTGTTCTTCGTGGGTTTGCGGATTTCGATGCGAGGAGTCCGTTGAAGTTGCTGAACCAGTTCGGGTCTCCGATGAAGGGGAAGCGATTTGGGGGGAAGGAGAACAAGGGGAGAGTGAATGGGTTGGGGTATAGTCCCAAAGGGGTGCCGAAATCGAATATTGGGTCGGAGAATTCTTGCAAGAAGGCCCTGAATTTGAGTCCGGCGGTTAAAGGGTCTCCGATTTCTGCGAAACGGAGGAGTTTTGGGAGCGATTCGTCCAGGAGGAAGAGTTTTAGTCCCCTGTTTGATCCAGAGCTGGTTGCTTCTTATGAGAAGGAAATGTCTGAAGAGGAAGTGCAGATCAAGAGGATGGTGCTGCCTTCGCCAAAAACCAGGAAAGTGAGGTATTCTAACCGAGATTCGGAGTCTATGCTGAAGTTGTTTGAGACGAAATGCCCTCCTGGTGGCGAGAATGCTGTTGTTATTTACACGACTACATTGAGGGGGATTAGGAAGACTTTTGAGGATTGCAACAATGTGAGGTCAATCGTGGAGTCTCACCTCGTTCGCGTGCTCGAGAGAGATATATCGATGGATTCGGGGTTTAAGGAGGAGATAAGGGGGCTAATGGGGACTAAAGAGGTTAGAGTTCCACTTGTGTTTGTGAAGGGGAGGTTGATTGGTGGTGCTGATGAGATTGTGAAGTTGGAAGAGGAAGGAAAGCTCGGGGTTTTGTTCGATGGGATTCCGAAAGCGCTTGTTGGGTGCCAAGGTTGTGCTGGAATGAGGTTTGTGATGTGCGTGGAGTGCAATGGAAGCTGCAAGGTTTTGGATGAGGGGCAAAAGAAGATGGTCAAATGTGGTGAGTGCAATGAGAATGGTTTGATTCATTGCCCACTTTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

386

Amino Acids

42.57

Weight (kDa)

8.95

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 244 - 311 2.3e-09 Glutaredoxin
GRXCR1-2_C PF23733 340 - 386 6.4e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03870
fragaria_vesca FvH4_6g18880
malus_domestica MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica Prupe.7G109100_v2.0.a1
pyrus_communis pycom14g02270
rosa_chinensis RchiOBHm_Chr3g0473861
rosa_laevigata RLG00000023977
rosa_multiflora Rmu_sc0002414.1_g000046
rosa_roxburghii Rroxscaffold_6G00407710
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana Rw3G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 241, 415, 1017
AccII CGCG 2 cut(s) 268, 822
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 3 cut(s) 239, 290, 476
AclWI GGATC 2 cut(s) 185, 554
AcsI RAATTY 2 cut(s) 442, 463
AcuI CTGAAG 2 cut(s) 618, 707
AfeI AGCGCT 1 cut(s) 1008
AfiI CCNNNNNNNGG 5 cut(s) 183, 184, 347, 673, 716
AgeI ACCGGT 1 cut(s) 139
AgsI TTSAA 3 cut(s) 28, 40, 316
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 3 cut(s) 530, 644, 712
AluBI AGCT 3 cut(s) 568, 976, 1071
AluI AGCT 3 cut(s) 568, 976, 1071
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 6 cut(s) 94, 146, 342, 492, 692, 813
AlwI GGATC 2 cut(s) 185, 554
Ama87I CYCGRG 2 cut(s) 827, 977
Aor13HI TCCGGA 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 1008
AoxI GGCC 2 cut(s) 112, 456
ApeKI GCWGC 3 cut(s) 6, 628, 1071
ApoI RAATTY 2 cut(s) 442, 463
ArsI GACNNNNNNTTYG 4 cut(s) 33, 65, 419, 451
AsiGI ACCGGT 1 cut(s) 139
Asp700I GAANNNNTTC 2 cut(s) 35, 329
AspLEI GCGC 3 cut(s) 68, 270, 1009
AspS9I GGNCC 1 cut(s) 457
AsuHPI GGTGA 4 cut(s) 43, 49, 803, 1127
AvaI CYCGRG 2 cut(s) 827, 977
BanI GGYRCC 3 cut(s) 241, 415, 1017
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 2 cut(s) 615, 1058
BccI CCATC 6 cut(s) 62, 214, 616, 838, 986, 1096
BceAI ACGGC 2 cut(s) 79, 127
BciT130I CCWGG 3 cut(s) 532, 646, 714
BcoDI GTCTC 6 cut(s) 94, 146, 342, 492, 692, 813
BfoI RGCGCY 1 cut(s) 1010
BisI GCNGC 3 cut(s) 7, 629, 1072
BlsI GCNGC 3 cut(s) 8, 630, 1073
Bme1390I CCNGG 3 cut(s) 532, 646, 714
BmeT110I CYCGRG 2 cut(s) 827, 977
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 457
BmiI GGNNCC 3 cut(s) 243, 417, 1019
BmrFI CCNGG 3 cut(s) 532, 646, 714
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 773
BpmI CTGGAG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 842
BsaI GGTCTC 2 cut(s) 342, 492
BsaJI CCNNGG 2 cut(s) 61, 1021
BsaWI WCCGGW 2 cut(s) 139, 193
BsaXI ACNNNNNCTCC 4 cut(s) 74, 104, 526, 556
Bsc4I CCNNNNNNNGG 5 cut(s) 183, 184, 347, 673, 716
Bse118I RCCGGY 2 cut(s) 139, 244
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 3 cut(s) 1069, 1129, 1141
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 3 cut(s) 532, 646, 714
BseCI ATCGAT 1 cut(s) 842
BseDI CCNNGG 2 cut(s) 61, 1021
BseGI GGATG 2 cut(s) 627, 1090
BseLI CCNNNNNNNGG 5 cut(s) 183, 184, 347, 673, 716
BseMI GCAATG 3 cut(s) 1069, 1129, 1141
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 4 cut(s) 268, 319, 523, 878
BseXI GCAGC 2 cut(s) 615, 1058
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 2 cut(s) 268, 822
BshFI GGCC 2 cut(s) 114, 458
BshNI GGYRCC 3 cut(s) 241, 415, 1017
BshTI ACCGGT 1 cut(s) 139
BshVI ATCGAT 1 cut(s) 842
BsiHKAI GWGCWC 1 cut(s) 828
BsiHKCI CYCGRG 2 cut(s) 827, 977
BsiSI CCGG 4 cut(s) 140, 194, 245, 473
BslFI GGGAC 4 cut(s) 243, 390, 534, 898
BslI CCNNNNNNNGG 5 cut(s) 183, 184, 347, 673, 716
BsmAI GTCTC 6 cut(s) 94, 146, 342, 492, 692, 813
BsmBI CGTCTC 2 cut(s) 94, 692
BsmFI GGGAC 4 cut(s) 243, 390, 534, 898
BsmI GAATGC 1 cut(s) 730
BsnI GGCC 2 cut(s) 114, 458
Bso31I GGTCTC 2 cut(s) 342, 492
BsoBI CYCGRG 2 cut(s) 827, 977
Bsp1286I GDGCHC 1 cut(s) 828
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 3 cut(s) 190, 559, 612
BspACI CCGC 3 cut(s) 239, 290, 476
BspANI GGCC 2 cut(s) 114, 458
BspDI ATCGAT 1 cut(s) 842
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 2 cut(s) 268, 822
BspLI GGNNCC 3 cut(s) 243, 417, 1019
BspPI GGATC 2 cut(s) 185, 554
BspT107I GGYRCC 3 cut(s) 241, 415, 1017
BspTNI GGTCTC 2 cut(s) 342, 492
BsrDI GCAATG 3 cut(s) 1069, 1129, 1141
BsrFI RCCGGY 2 cut(s) 139, 244
BsrI ACTGG 1 cut(s) 328
BssAI RCCGGY 2 cut(s) 139, 244
BssECI CCNNGG 2 cut(s) 61, 1021
BssMI GATC 3 cut(s) 190, 559, 612
BssT1I CCWWGG 1 cut(s) 1021
Bst2UI CCWGG 3 cut(s) 532, 646, 714
Bst4CI ACNGT 2 cut(s) 24, 72
Bst6I CTCTTC 4 cut(s) 39, 533, 594, 957
BstC8I GCNNGC 1 cut(s) 824
BstDSI CCRYGG 1 cut(s) 61
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 2 cut(s) 627, 1090
BstFNI CGCG 2 cut(s) 268, 822
BstH2I RGCGCY 1 cut(s) 1010
BstHHI GCGC 3 cut(s) 68, 270, 1009
BstKTI GATC 3 cut(s) 193, 562, 615
BstMAI GTCTC 6 cut(s) 94, 146, 342, 492, 692, 813
BstMBI GATC 3 cut(s) 190, 559, 612
BstMWI GCNNNNNNNGC 5 cut(s) 72, 111, 634, 1059, 1068
BstNI CCWGG 3 cut(s) 532, 646, 714
BstPI GGTNACC 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 530, 644, 712
BstUI CGCG 2 cut(s) 268, 822
BstV1I GCAGC 2 cut(s) 615, 1058
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
Bsu15I ATCGAT 1 cut(s) 842
BsuRI GGCC 2 cut(s) 114, 458
BsuTUI ATCGAT 1 cut(s) 842
BtgI CCRYGG 1 cut(s) 61
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 2 cut(s) 627, 1090
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 824
CfoI GCGC 3 cut(s) 68, 270, 1009
Cfr10I RCCGGY 2 cut(s) 139, 244
Cfr13I GGNCC 1 cut(s) 457
ClaI ATCGAT 1 cut(s) 842
CspAI ACCGGT 1 cut(s) 139
CviJI RGCY 8 cut(s) 6, 114, 229, 458, 568, 877, 976, 1071
CviKI_1 RGCY 8 cut(s) 6, 114, 229, 458, 568, 877, 976, 1071
DpnI GATC 3 cut(s) 192, 561, 614
DpnII GATC 3 cut(s) 190, 559, 612
Eam1104I CTCTTC 4 cut(s) 39, 533, 594, 957
EarI CTCTTC 4 cut(s) 39, 533, 594, 957
Eco130I CCWWGG 1 cut(s) 1021
Eco31I GGTCTC 2 cut(s) 342, 492
Eco47III AGCGCT 1 cut(s) 1008
Eco57I CTGAAG 2 cut(s) 618, 707
Eco88I CYCGRG 2 cut(s) 827, 977
Eco91I GGTNACC 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 49
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 3 cut(s) 530, 644, 712
EcoT14I CCWWGG 1 cut(s) 1021
ErhI CCWWGG 1 cut(s) 1021
Esp3I CGTCTC 2 cut(s) 94, 692
FaiI YATR 5 cut(s) 159, 402, 582, 683, 839
FaqI GGGAC 4 cut(s) 243, 390, 534, 898
Fnu4HI GCNGC 3 cut(s) 7, 629, 1072
FokI GGATG 2 cut(s) 634, 1097
Fsp4HI GCNGC 3 cut(s) 7, 629, 1072
GlaI GCGC 3 cut(s) 67, 269, 1008
GluI GCNGC 3 cut(s) 7, 629, 1072
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 1010
HaeIII GGCC 2 cut(s) 114, 458
HapII CCGG 4 cut(s) 140, 194, 245, 473
HhaI GCGC 3 cut(s) 68, 270, 1009
Hin6I GCGC 3 cut(s) 66, 268, 1007
HinP1I GCGC 3 cut(s) 66, 268, 1007
HpaII CCGG 4 cut(s) 140, 194, 245, 473
HphI GGTGA 4 cut(s) 43, 49, 803, 1127
Hpy188I TCNGA 7 cut(s) 151, 342, 439, 492, 598, 676, 1002
Hpy188III TCNNGA 7 cut(s) 28, 125, 194, 250, 563, 616, 829
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 8 cut(s) 125, 340, 361, 448, 580, 642, 913, 962
HpyCH4III ACNGT 2 cut(s) 24, 72
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 6 cut(s) 450, 610, 783, 1062, 1074, 1122
HpyF10VI GCNNNNNNNGC 5 cut(s) 72, 111, 634, 1059, 1068
HpySE526I ACGT 1 cut(s) 84
HspAI GCGC 3 cut(s) 66, 268, 1007
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 3 cut(s) 190, 559, 612
LmnI GCTCC 1 cut(s) 519
Lsp1109I GCAGC 2 cut(s) 615, 1058
LweI GCATC 1 cut(s) 289
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 192, 561, 614
MboI GATC 3 cut(s) 190, 559, 612
MboII GAAGA 9 cut(s) 6, 56, 200, 269, 550, 611, 778, 974, 1111
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 828
MluCI AATT 2 cut(s) 442, 463
MlyI GAGTC 6 cut(s) 148, 265, 316, 478, 686, 815
MmeI TCCRAC 2 cut(s) 417, 939
MroI TCCGGA 1 cut(s) 193
MroXI GAANNNNTTC 2 cut(s) 35, 329
MseI TTAA 3 cut(s) 165, 480, 858
MspI CCGG 4 cut(s) 140, 194, 245, 473
MspR9I CCNGG 3 cut(s) 532, 646, 714
Mva1269I GAATGC 1 cut(s) 730
MvaI CCWGG 3 cut(s) 532, 646, 714
MvnI CGCG 2 cut(s) 268, 822
MwoI GCNNNNNNNGC 5 cut(s) 72, 111, 634, 1059, 1068
NdeII GATC 3 cut(s) 190, 559, 612
NlaIV GGNNCC 3 cut(s) 243, 417, 1019
NmuCI GTSAC 1 cut(s) 49
PaeR7I CTCGAG 1 cut(s) 827
PctI GAATGC 1 cut(s) 730
PdmI GAANNNNTTC 2 cut(s) 35, 329
PfeI GAWTC 5 cut(s) 524, 671, 848, 997, 1138
PfoI TCCNGGA 1 cut(s) 530
PinAI ACCGGT 1 cut(s) 139
PkrI GCNGC 3 cut(s) 8, 630, 1073
PleI GAGTC 6 cut(s) 148, 264, 315, 477, 685, 814
PpsI GAGTC 6 cut(s) 148, 264, 315, 477, 685, 814
Psp6I CCWGG 3 cut(s) 530, 644, 712
PspEI GGTNACC 1 cut(s) 49
PspGI CCWGG 3 cut(s) 530, 644, 712
PspN4I GGNNCC 3 cut(s) 243, 417, 1019
PspPI GGNCC 1 cut(s) 457
PsuI RGATCY 1 cut(s) 190
SaqAI TTAA 3 cut(s) 165, 480, 858
SatI GCNGC 3 cut(s) 7, 629, 1072
Sau3AI GATC 3 cut(s) 190, 559, 612
Sau96I GGNCC 1 cut(s) 457
SchI GAGTC 6 cut(s) 148, 265, 316, 478, 686, 815
ScrFI CCNGG 3 cut(s) 532, 646, 714
SduI GDGCHC 1 cut(s) 828
SfaNI GCATC 1 cut(s) 289
Sfr274I CTCGAG 1 cut(s) 827
SlaI CTCGAG 1 cut(s) 827
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 2 cut(s) 442, 463
SsiI CCGC 3 cut(s) 239, 290, 476
SspI AATATT 1 cut(s) 430
StyD4I CCNGG 3 cut(s) 530, 644, 712
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 2 cut(s) 24, 72
TaiI ACGT 1 cut(s) 87
TaqI TCGA 6 cut(s) 126, 297, 425, 828, 842, 990
TasI AATT 2 cut(s) 442, 463
TfiI GAWTC 5 cut(s) 524, 671, 848, 997, 1138
Tru1I TTAA 3 cut(s) 165, 480, 858
Tru9I TTAA 3 cut(s) 165, 480, 858
TscAI CASTG 1 cut(s) 77
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 3 cut(s) 6, 628, 1071
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 359, 1130
TspGWI ACGGA 2 cut(s) 300, 520
TspRI CASTG 1 cut(s) 77
XapI RAATTY 2 cut(s) 442, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 1028
XhoI CTCGAG 1 cut(s) 827
XmnI GAANNNNTTC 2 cut(s) 35, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.