Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0015184

Physical Location & Seq

Genomic Coordinates Forward (+)

2682294 .. 2683478

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1024900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGCTGCGTTTCATCGAAACTGTTCAAGAAAGAAGATAACAATGGCGGCGGCGAATACGTCATCAACCACGTCGTCTCTCTCACTTCCAGCACCTACGGCGTCCTGAACCTTGAAAATGACCCACAATCCACCAAAGACGGCGCTGAGGAGAGTAAGAGGGTGGAGAAATCTTCGCCGCCCCGCGAAGATCCGGAGGTTATCAACGCTTGGGAACTCATGGAGGGGCTCGAAGAAGGAATGCCCATCTCGAATCCGGCCAAGAAGAGCCCGAAATCGCGTGCTCTGCTTCGCGGGTTTGCGGATTTCGATTCGAGGAGTCCGTTCAAGTTGTTGAATCAGATCGGGTCGCCGATGAAATCAAAGCGATTCGGAGGGAAGGAGAACAGTAAAGGAAGAGTGGTGAATGTTAATGCGTTGGGTTATAGCCCGAAACAGGTTCTGAAGCAGAAAAATGGCGGCGAGAATTCGTGTAAGAAGATGTTGAATTGGAGCCCCAGCGTAAAAGGGTCGCCTGTTGCGGCGAAAAGGCAAAGCTTTGGCAGCGATTCGTCGCAGAGGAGTTTTAGTCCCCTGTTTGATCCGGAACTTGTTGCTTCTTACGAAAAGGAAATATCTGAGGAGAAAGAGCAGATCAAGAGGATGGTTCCGCCGTCACCAAGGCCCCGAAAATTGAGGAATTCGTCCAAGGATTCGGAGTCTATGCTGCAATTATTCGAGAAAAAATGCCCACCGGGGGGAGAAAATGCTGTGGTTGTGTACACAACTACACTCAGAGGAATTAGGAAGACTTTTGAGGATTGCAACAACGTCAGATCCATCGTGGAGTCACACCTCATTCATGTCCTCGAGCGCGATATATCTATGGATTCGGGTTTTAAGGAGGAGATAAGGGGACTAATGGGTACCAAGGAGGTTAAGGTTCCACTTGTGTTTGTGAAGGGGAGGTTGATTGGTGGCGCCGACGAGGTGGTGAAGTTGGAGGAGGAAGGGAAGCTTGGGGTTCTGTTTGATGGGATTCCAAGGGCGGTCATGGGATGCAAGGGCTGTGCCGGAATGAGATTCGTGATGTGCATGGTATGCAATGGAAGCTGCAAGGTTTTGGATGAGTTGCGAAAGAGGATGGTAAAATGTGGTGAATGTAATGAAAATGGTTTGATCCACTGCCCAATTTGTTGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

395

Amino Acids

43.45

Weight (kDa)

8.91

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	251 - 318	2.7e-09	Glutaredoxin
GRXCR1-2_C	PF23733	347 - 393	1.7e-16	GRXCR1/2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03870
fragaria_vesca	FvH4_6g18880
malus_domestica	MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica	Prupe.7G109100_v2.0.a1
pyrus_communis	pycom14g02270
rosa_chinensis	RchiOBHm_Chr3g0473861
rosa_laevigata	RLG00000023977
rosa_multiflora	Rmu_sc0002414.1_g000046
rosa_roxburghii	Rroxscaffold_6G00407710
rosa_rugosa	Rorug03G0136100
rosa_samantha	Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana	Rw3G017070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	905
AccB1I	GGYRCC	2 cut(s)	905, 959
AccII	CGCG	4 cut(s)	186, 280, 294, 855
AccIII	TCCGGA	2 cut(s)	193, 583
AclWI	GGATC	4 cut(s)	185, 575, 810, 1153
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	466, 679
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	102, 960
AfaI	GTAC	2 cut(s)	761, 907
AfiI	CCNNNNNNNGG	3 cut(s)	436, 736, 737
AgsI	TTSAA	5 cut(s)	28, 116, 328, 337, 487
AjiI	CACGTC	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	981, 1013
AluBI	AGCT	3 cut(s)	537, 997, 1092
AluI	AGCT	3 cut(s)	537, 997, 1092
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	4 cut(s)	185, 575, 810, 1153
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	848
Aor13HI	TCCGGA	2 cut(s)	193, 583
AoxI	GGCC	2 cut(s)	258, 662
ApeKI	GCWGC	5 cut(s)	6, 543, 706, 1092, 1179
ApoI	RAATTY	2 cut(s)	466, 679
Asp700I	GAANNNNTTC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	905
AspLEI	GCGC	3 cut(s)	146, 855, 962
AspS9I	GGNCC	1 cut(s)	663
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	4 cut(s)	415, 648, 985, 1148
AvaI	CYCGRG	1 cut(s)	848
BanI	GGYRCC	2 cut(s)	905, 959
BanII	GRGCYC	3 cut(s)	231, 272, 497
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	1 cut(s)	286
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	555, 693, 1079, 1166
BccI	CCATC	5 cut(s)	254, 637, 827, 1007, 1117
BceAI	ACGGC	3 cut(s)	115, 157, 637
BcnI	CCSGG	1 cut(s)	735
BcoDI	GTCTC	1 cut(s)	82
BfoI	RGCGCY	2 cut(s)	147, 963
Bme1390I	CCNGG	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	848
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	663
BmiI	GGNNCC	6 cut(s)	494, 648, 665, 907, 924, 961
BmrFI	CCNGG	1 cut(s)	735
BmsI	GCATC	1 cut(s)	1028
BpiI	GAAGAC	1 cut(s)	794
Bpu10I	CCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	735
BsaHI	GRCGYC	2 cut(s)	102, 960
BsaJI	CCNNGG	5 cut(s)	659, 687, 734, 909, 1022
BsaWI	WCCGGW	2 cut(s)	193, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 736, 737
Bse3DI	GCAATG	1 cut(s)	1090
BseAI	TCCGGA	2 cut(s)	193, 583
BseDI	CCNNGG	5 cut(s)	659, 687, 734, 909, 1022
BseGI	GGATG	4 cut(s)	648, 1043, 1111, 1128
BseLI	CCNNNNNNNGG	3 cut(s)	436, 736, 737
BseMI	GCAATG	1 cut(s)	1090
BseMII	CTCAG	3 cut(s)	138, 609, 787
BseRI	GAGGAG	6 cut(s)	164, 331, 574, 635, 899, 998
BseXI	GCAGC	4 cut(s)	555, 693, 1079, 1166
BseYI	CCCAGC	1 cut(s)	497
Bsh1236I	CGCG	4 cut(s)	186, 280, 294, 855
BshFI	GGCC	2 cut(s)	260, 664
BshNI	GGYRCC	2 cut(s)	905, 959
BsiHKAI	GWGCWC	1 cut(s)	286
BsiHKCI	CYCGRG	1 cut(s)	848
BsiSI	CCGG	5 cut(s)	194, 257, 584, 734, 1053
BslFI	GGGAC	2 cut(s)	555, 909
BslI	CCNNNNNNNGG	3 cut(s)	436, 736, 737
BsmAI	GTCTC	1 cut(s)	82
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	555, 909
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	260, 664
BsoBI	CYCGRG	1 cut(s)	848
Bsp1286I	GDGCHC	4 cut(s)	231, 272, 286, 497
Bsp13I	TCCGGA	2 cut(s)	193, 583
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
BspANI	GGCC	2 cut(s)	260, 664
BspCNI	CTCAG	3 cut(s)	139, 610, 786
BspEI	TCCGGA	2 cut(s)	193, 583
BspFNI	CGCG	4 cut(s)	186, 280, 294, 855
BspLI	GGNNCC	6 cut(s)	494, 648, 665, 907, 924, 961
BspPI	GGATC	4 cut(s)	185, 575, 810, 1153
BspQI	GCTCTTC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	905, 959
BsrDI	GCAATG	1 cut(s)	1090
BsrGI	TGTACA	1 cut(s)	759
BssECI	CCNNGG	5 cut(s)	659, 687, 734, 909, 1022
BssMI	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
BssNI	GRCGYC	2 cut(s)	102, 960
BssT1I	CCWWGG	4 cut(s)	659, 687, 909, 1022
Bst4CI	ACNGT	2 cut(s)	24, 389
Bst6I	CTCTTC	2 cut(s)	260, 391
BstACI	GRCGYC	2 cut(s)	102, 960
BstAPI	GCANNNNNTGC	1 cut(s)	1080
BstAUI	TGTACA	1 cut(s)	759
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	147, 618, 773
BstF5I	GGATG	4 cut(s)	648, 1043, 1111, 1128
BstFNI	CGCG	4 cut(s)	186, 280, 294, 855
BstH2I	RGCGCY	2 cut(s)	147, 963
BstHHI	GCGC	3 cut(s)	146, 855, 962
BstKTI	GATC	6 cut(s)	193, 345, 583, 636, 818, 1161
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
BstMWI	GCNNNNNNNGC	5 cut(s)	99, 286, 543, 1080, 1089
BstSCI	CCNGG	1 cut(s)	733
BstUI	CGCG	4 cut(s)	186, 280, 294, 855
BstV1I	GCAGC	4 cut(s)	555, 693, 1079, 1166
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	190, 815
BstYI	RGATCY	2 cut(s)	190, 815
BsuRI	GGCC	2 cut(s)	260, 664
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	648, 1043, 1111, 1128
BtsI	GCAGTG	1 cut(s)	1162
BtsIMutI	CAGTG	1 cut(s)	1162
Cac8I	GCNNGC	1 cut(s)	282
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	3 cut(s)	146, 855, 962
Cfr13I	GGNCC	1 cut(s)	663
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	760, 906
CviAII	CATG	4 cut(s)	220, 842, 1033, 1075
CviQI	GTAC	2 cut(s)	760, 906
DdeI	CTNAG	3 cut(s)	147, 618, 773
DinI	GGCGCC	1 cut(s)	961
DpnI	GATC	6 cut(s)	192, 344, 582, 635, 817, 1160
DpnII	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	260, 391
EarI	CTCTTC	2 cut(s)	260, 391
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	4 cut(s)	659, 687, 909, 1022
Eco24I	GRGCYC	3 cut(s)	231, 272, 497
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	663
EcoRI	GAATTC	2 cut(s)	466, 679
EcoT14I	CCWWGG	4 cut(s)	659, 687, 909, 1022
EcoT38I	GRGCYC	3 cut(s)	231, 272, 497
EgeI	GGCGCC	1 cut(s)	961
EheI	GGCGCC	1 cut(s)	961
ErhI	CCWWGG	4 cut(s)	659, 687, 909, 1022
Esp3I	CGTCTC	1 cut(s)	82
FaeI	CATG	4 cut(s)	223, 845, 1036, 1078
FaiI	YATR	9 cut(s)	221, 426, 704, 843, 860, 866, 1034, 1076, 1081
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	2 cut(s)	555, 909
FatI	CATG	4 cut(s)	219, 841, 1032, 1074
FauI	CCCGC	2 cut(s)	191, 287
FokI	GGATG	4 cut(s)	655, 1050, 1118, 1135
FriOI	GRGCYC	3 cut(s)	231, 272, 497
GlaI	GCGC	3 cut(s)	145, 854, 961
GsaI	CCCAGC	1 cut(s)	501
HaeII	RGCGCY	2 cut(s)	147, 963
HaeIII	GGCC	2 cut(s)	260, 664
HapII	CCGG	5 cut(s)	194, 257, 584, 734, 1053
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	3 cut(s)	146, 855, 962
Hin1I	GRCGYC	2 cut(s)	102, 960
Hin1II	CATG	4 cut(s)	223, 845, 1036, 1078
Hin6I	GCGC	3 cut(s)	144, 853, 960
HinP1I	GCGC	3 cut(s)	144, 853, 960
HindIII	AAGCTT	2 cut(s)	535, 995
HpaII	CCGG	5 cut(s)	194, 257, 584, 734, 1053
HphI	GGTGA	4 cut(s)	415, 648, 985, 1148
Hpy166II	GTNNAC	2 cut(s)	760, 762
Hpy188I	TCNGA	7 cut(s)	342, 374, 444, 619, 697, 776, 815
Hpy188III	TCNNGA	8 cut(s)	28, 106, 194, 250, 584, 637, 718, 1066
Hpy8I	GTNNAC	2 cut(s)	760, 762
Hpy99I	CGWCG	3 cut(s)	77, 556, 968
HpyAV	CCTTC	4 cut(s)	230, 373, 934, 983
HpyCH4III	ACNGT	2 cut(s)	24, 389
HpyCH4IV	ACGT	3 cut(s)	60, 72, 810
HpyCH4V	TGCA	6 cut(s)	709, 804, 1041, 1074, 1083, 1095
HpyF10VI	GCNNNNNNNGC	5 cut(s)	99, 286, 543, 1080, 1089
HpyF3I	CTNAG	3 cut(s)	147, 618, 773
HpySE526I	ACGT	3 cut(s)	60, 72, 810
Hsp92I	GRCGYC	2 cut(s)	102, 960
Hsp92II	CATG	4 cut(s)	223, 845, 1036, 1078
HspAI	GCGC	3 cut(s)	144, 853, 960
KasI	GGCGCC	1 cut(s)	959
Kpn2I	TCCGGA	2 cut(s)	193, 583
KpnI	GGTACC	1 cut(s)	909
Kzo9I	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
LguI	GCTCTTC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	492
Lsp1109I	GCAGC	4 cut(s)	555, 693, 1079, 1166
LweI	GCATC	1 cut(s)	1028
MaeII	ACGT	3 cut(s)	60, 72, 810
MaeIII	GTNAC	2 cut(s)	654, 828
MalI	GATC	6 cut(s)	192, 344, 582, 635, 817, 1160
MboI	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
MboII	GAAGA	8 cut(s)	47, 165, 200, 245, 277, 408, 490, 799
MflI	RGATCY	2 cut(s)	190, 815
MhlI	GDGCHC	4 cut(s)	231, 272, 286, 497
MluCI	AATT	7 cut(s)	466, 487, 671, 679, 710, 780, 1170
Mly113I	GGCGCC	1 cut(s)	960
MlyI	GAGTC	3 cut(s)	328, 707, 836
MmeI	TCCRAC	1 cut(s)	960
MroI	TCCGGA	2 cut(s)	193, 583
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	411, 879, 918
MspI	CCGG	5 cut(s)	194, 257, 584, 734, 1053
MspR9I	CCNGG	1 cut(s)	735
Mva1269I	GAATGC	1 cut(s)	246
MvnI	CGCG	4 cut(s)	186, 280, 294, 855
MwoI	GCNNNNNNNGC	5 cut(s)	99, 286, 543, 1080, 1089
NarI	GGCGCC	1 cut(s)	960
NciI	CCSGG	1 cut(s)	735
NdeII	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
NlaIII	CATG	4 cut(s)	223, 845, 1036, 1078
NlaIV	GGNNCC	6 cut(s)	494, 648, 665, 907, 924, 961
NmuCI	GTSAC	2 cut(s)	654, 828
PaeR7I	CTCGAG	1 cut(s)	848
PciSI	GCTCTTC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	320
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	9 cut(s)	253, 311, 337, 369, 548, 692, 869, 1018, 1062
PleI	GAGTC	3 cut(s)	327, 706, 835
PluTI	GGCGCC	1 cut(s)	963
PpsI	GAGTC	3 cut(s)	327, 706, 835
PspFI	CCCAGC	1 cut(s)	497
PspN4I	GGNNCC	6 cut(s)	494, 648, 665, 907, 924, 961
PspPI	GGNCC	1 cut(s)	663
PspXI	VCTCGAGB	1 cut(s)	848
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	190, 815
RsaI	GTAC	2 cut(s)	761, 907
RsaNI	GTAC	2 cut(s)	760, 906
SapI	GCTCTTC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	411, 879, 918
Sau3AI	GATC	6 cut(s)	190, 342, 580, 633, 815, 1158
Sau96I	GGNCC	1 cut(s)	663
SchI	GAGTC	3 cut(s)	328, 707, 836
ScrFI	CCNGG	1 cut(s)	735
SduI	GDGCHC	4 cut(s)	231, 272, 286, 497
SfaNI	GCATC	1 cut(s)	1028
SfoI	GGCGCC	1 cut(s)	961
Sfr274I	CTCGAG	1 cut(s)	848
SlaI	CTCGAG	1 cut(s)	848
SmlI	CTYRAG	1 cut(s)	848
SmoI	CTYRAG	1 cut(s)	848
Sse9I	AATT	7 cut(s)	466, 487, 671, 679, 710, 780, 1170
SspDI	GGCGCC	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	733
StyI	CCWWGG	4 cut(s)	659, 687, 909, 1022
TaaI	ACNGT	2 cut(s)	24, 389
TaiI	ACGT	3 cut(s)	63, 75, 813
TaqI	TCGA	7 cut(s)	17, 231, 251, 309, 314, 717, 849
TasI	AATT	7 cut(s)	466, 487, 671, 679, 710, 780, 1170
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	5 cut(s)	51, 54, 181, 462, 524
TfiI	GAWTC	9 cut(s)	253, 311, 337, 369, 548, 692, 869, 1018, 1062
Tru1I	TTAA	3 cut(s)	411, 879, 918
Tru9I	TTAA	3 cut(s)	411, 879, 918
TscAI	CASTG	1 cut(s)	1169
TseFI	GTSAC	2 cut(s)	654, 828
TseI	GCWGC	5 cut(s)	6, 543, 706, 1092, 1179
Tsp45I	GTSAC	2 cut(s)	654, 828
TspDTI	ATGAA	3 cut(s)	371, 830, 1161
TspGWI	ACGGA	1 cut(s)	312
TspRI	CASTG	1 cut(s)	1169
XapI	RAATTY	2 cut(s)	466, 679
XhoI	CTCGAG	1 cut(s)	848
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.