Rorug03G0136100

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014262
Physical Location & Seq
Reverse (-)
11173133 .. 11176072
2940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0136100.1

Sequence Viewer

Length: 1314 bp
ATGATACGCACTGCGCTATCACGAGCAGCAGCCACCGTCGCCGCCCGCACCTCCGCCAAGCTCCGCCCTTCCCTTCTGGCACGATCTCCGCCGTCCAGACATCTCCACGATGGGATTAACGCCAACCCTGTTGCTCTTCAGATGATCAACTACGCCCTCTCTCTCGCCAGGTCTCACAAATCAGATGAATCGTACGGACAAGCTCAGCTTGTGCTGGAACAGTGCCTTTCGTCTCAGCCTGGTGAAGGCCAGGACCTTGCTACTGATAATTCAAGGGCAATGGTGTTAGTGGCCATGTCTACTTTGTTATCTGAAAGAGGAAGGCTTGATGAAGCAATAGAAAAACTGCAAAAAGTTGAAGACTTGAGCAGCTCTTCAGTTGGTGTTAGGATTGCCGCGTTGGAGGCGCTTGTTGGACTGCACTTAGAGTTAAAGCAGGATCATACCTCATCAGTGCTCGCTGATAAATGCTTAGAACTGTCGGAGAAACATGATGAACTTGGATCTGGTGGTTCTGAGGGATATACTCGTGCAGTAGCGGTAAAAGGACTTGTTGAGCTTGTGCATGGTAATCTTGGATTATGTAAAGATGTAGCTAAAGGTGAACTTTTCATTCGAGAAGTTGAGAGAAATGTTGAGGAAGTTGAAGAATTCACTGGTAGTACTGCTTTGTTCTTTGGAGAGCTCTTGCATGCCAGACAGAGCTTTGAGATGGCGAAGAAGGTATACCAGAAAATTATCCAAAATGATTCCAGGAATGAAGAGTTCAGTGACCCAAGTGCATTAGCAGCTGGTAATATGTCGTCAGACAACGTTTTGTTAGCGGCCACATGTGCGTTGGGACAGCTTGAGGCTCATTCAGGGAACTTCGGTGATGCTGAGGAGATGTTAACGAGAGCTTTAACTAAAACAGAGGAACATTTTGGCTCTCATCATCCTAAAGTTGGCGTTGTTTTAACCTGCATAGCTCTCATGTTTCAGCGTAAAGCAGTCCAAGAGCATTCCAGTTCTATATTGGTCCAAGAGGGACTTTATAGAAGGGCAATAGAATTGCTGAAAGCTCCAGCATTGGAGGCTGAAGGTGCAGAAGCAAAGGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTGGGTATGCAGAAGTACTTTGCATCCAACAGAACCGAAAGCATCAAGGAGAAAAAATGAAGAGGTGGGCGGAGGCTGCATGGGGAAACCGCCGGCTTTCATTGGCAGAAGCACTAGATGTATCTAATACAGATACATCTTTAAAAGTTCCAATTATAGATGCTCGAATCAGCAGGGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

437

Amino Acids

47.48

Weight (kDa)

5.92

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 276 - 334 6.4e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccI GTMKAC 2 cut(s) 299, 726
AccII CGCG 1 cut(s) 398
AclI AACGTT 1 cut(s) 813
AclWI GGATC 2 cut(s) 447, 511
AcoI YGGCCR 2 cut(s) 291, 825
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 3 cut(s) 122, 360, 1098
AfaI GTAC 3 cut(s) 194, 664, 1146
AfiI CCNNNNNNNGG 2 cut(s) 245, 944
AflIII ACRYGT 1 cut(s) 830
AgsI TTSAA 3 cut(s) 273, 359, 647
AjnI CCWGG 4 cut(s) 167, 238, 249, 752
Alw21I GWGCWC 2 cut(s) 459, 687
Alw26I GTCTC 2 cut(s) 177, 237
AlwI GGATC 2 cut(s) 447, 511
AoxI GGCC 4 cut(s) 247, 291, 825, 1116
ApeKI GCWGC 5 cut(s) 26, 29, 369, 788, 1205
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 2 cut(s) 16, 409
AspS9I GGNCC 3 cut(s) 253, 1018, 1117
AsuHPI GGTGA 3 cut(s) 254, 614, 884
AvaII GGWCC 2 cut(s) 253, 1018
BalI TGGCCA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BauI CACGAG 2 cut(s) 21, 528
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 459, 687
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BccI CCATC 2 cut(s) 104, 706
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 4 cut(s) 169, 240, 251, 754
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 177, 237
BfaI CTAG 1 cut(s) 1244
BfmI CTRYAG 1 cut(s) 1310
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 968
BisI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 8 cut(s) 28, 31, 43, 371, 397, 790, 826, 1207
BmcAI AGTACT 2 cut(s) 664, 1146
Bme1390I CCNGG 4 cut(s) 169, 240, 251, 754
Bme18I GGWCC 2 cut(s) 253, 1018
BmgT120I GGNCC 3 cut(s) 253, 1018, 1117
BmrFI CCNGG 4 cut(s) 169, 240, 251, 754
BmsI GCATC 4 cut(s) 865, 1161, 1180, 1279
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 385, 869
BsaI GGTCTC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 944
Bse118I RCCGGY 1 cut(s) 1221
Bse1I ACTGG 2 cut(s) 661, 1005
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 4 cut(s) 169, 240, 251, 754
BseGI GGATG 2 cut(s) 934, 1152
BseLI CCNNNNNNNGG 2 cut(s) 245, 944
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 4 cut(s) 218, 248, 507, 870
BseNI ACTGG 2 cut(s) 661, 1005
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BsgI GTGCAG 3 cut(s) 404, 552, 1104
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 4 cut(s) 249, 293, 827, 1118
BsiHKAI GWGCWC 2 cut(s) 459, 687
BsiSI CCGG 1 cut(s) 1222
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 855, 1041
BslI CCNNNNNNNGG 2 cut(s) 245, 944
BsmAI GTCTC 2 cut(s) 177, 237
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 2 cut(s) 855, 1041
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 4 cut(s) 249, 293, 827, 1118
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 2 cut(s) 459, 687
Bsp143I GATC 4 cut(s) 83, 144, 439, 503
Bsp1720I GCTNAGC 1 cut(s) 204
BspANI GGCC 4 cut(s) 249, 293, 827, 1118
BspCNI CTCAG 4 cut(s) 217, 247, 508, 871
BspFNI CGCG 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 2 cut(s) 447, 511
BspQI GCTCTTC 2 cut(s) 141, 379
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 1221
BsrI ACTGG 2 cut(s) 661, 1005
BssAI RCCGGY 1 cut(s) 1221
BssMI GATC 4 cut(s) 83, 144, 439, 503
BssNAI GTATAC 1 cut(s) 727
BssSI CACGAG 2 cut(s) 21, 528
Bst1107I GTATAC 1 cut(s) 727
Bst2BI CACGAG 2 cut(s) 21, 528
Bst2UI CCWGG 4 cut(s) 169, 240, 251, 754
Bst4CI ACNGT 3 cut(s) 37, 222, 480
Bst6I CTCTTC 4 cut(s) 141, 379, 756, 1184
BstC8I GCNNGC 4 cut(s) 46, 459, 693, 1223
BstDEI CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 934, 1152
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 16, 409
BstKTI GATC 4 cut(s) 86, 147, 442, 506
BstMAI GTCTC 2 cut(s) 177, 237
BstMBI GATC 4 cut(s) 83, 144, 439, 503
BstMWI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
BstNI CCWGG 4 cut(s) 169, 240, 251, 754
BstNSI RCATGY 2 cut(s) 695, 834
BstSCI CCNGG 4 cut(s) 167, 238, 249, 752
BstSFI CTRYAG 1 cut(s) 1310
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZ17I GTATAC 1 cut(s) 727
BsuRI GGCC 4 cut(s) 249, 293, 827, 1118
BtsCI GGATG 2 cut(s) 934, 1152
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 227, 459, 654, 775
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 4 cut(s) 46, 459, 693, 1223
CfoI GCGC 2 cut(s) 16, 409
Cfr10I RCCGGY 1 cut(s) 1221
Cfr13I GGNCC 3 cut(s) 253, 1018, 1117
Csp6I GTAC 3 cut(s) 193, 663, 1145
CviAII CATG 7 cut(s) 295, 491, 566, 692, 831, 973, 1209
CviQI GTAC 3 cut(s) 193, 663, 1145
DdeI CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
DpnI GATC 4 cut(s) 85, 146, 441, 505
DpnII GATC 4 cut(s) 83, 144, 439, 503
DraI TTTAAA 1 cut(s) 1272
EaeI YGGCCR 2 cut(s) 291, 825
Eam1104I CTCTTC 4 cut(s) 141, 379, 756, 1184
EarI CTCTTC 4 cut(s) 141, 379, 756, 1184
EciI GGCGGA 4 cut(s) 43, 53, 78, 1214
Ecl136II GAGCTC 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 2 cut(s) 253, 1018
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 3 cut(s) 122, 360, 1098
EcoICRI GAGCTC 1 cut(s) 685
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 4 cut(s) 167, 238, 249, 752
EcoT38I GRGCYC 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 591, 623, 1014, 1046
FaqI GGGAC 2 cut(s) 855, 1041
FatI CATG 7 cut(s) 294, 490, 565, 691, 830, 972, 1208
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 2 cut(s) 299, 726
Fnu4HI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
FokI GGATG 2 cut(s) 921, 1139
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
FspBI CTAG 1 cut(s) 1244
GlaI GCGC 2 cut(s) 15, 408
GluI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
GsuI CTGGAG 1 cut(s) 1047
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 4 cut(s) 249, 293, 827, 1118
HapII CCGG 1 cut(s) 1222
HhaI GCGC 2 cut(s) 16, 409
Hin1II CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
Hin6I GCGC 2 cut(s) 14, 407
HinP1I GCGC 2 cut(s) 14, 407
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HinfI GANTC 3 cut(s) 188, 749, 1296
HpaI GTTAAC 1 cut(s) 891
HpaII CCGG 1 cut(s) 1222
HphI GGTGA 3 cut(s) 254, 614, 884
Hpy166II GTNNAC 4 cut(s) 300, 605, 727, 891
Hpy188I TCNGA 6 cut(s) 141, 184, 313, 484, 517, 808
Hpy188III TCNNGA 3 cut(s) 21, 96, 617
Hpy8I GTNNAC 4 cut(s) 300, 605, 727, 891
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 78, 83, 239, 315, 715, 1032, 1073
HpyCH4III ACNGT 3 cut(s) 37, 222, 480
HpyCH4IV ACGT 1 cut(s) 813
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
HpyF3I CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
HpySE526I ACGT 1 cut(s) 813
Hsp92II CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
HspAI GCGC 2 cut(s) 14, 407
KroI GCCGGC 1 cut(s) 1221
KroNI GCCGGC 1 cut(s) 1223
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 4 cut(s) 83, 144, 439, 503
LguI GCTCTTC 2 cut(s) 141, 379
LmnI GCTCC 2 cut(s) 66, 1066
Lsp1109I GCAGC 5 cut(s) 38, 41, 381, 800, 1192
LweI GCATC 4 cut(s) 865, 1161, 1180, 1279
MaeI CTAG 1 cut(s) 1244
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 1 cut(s) 770
MalI GATC 4 cut(s) 85, 146, 441, 505
MboI GATC 4 cut(s) 83, 144, 439, 503
MboII GAAGA 7 cut(s) 128, 366, 371, 659, 730, 773, 1201
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 459, 687
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 5 cut(s) 268, 650, 735, 1049, 1281
MluNI TGGCCA 1 cut(s) 293
MmeI TCCRAC 4 cut(s) 381, 394, 462, 1180
Mox20I TGGCCA 1 cut(s) 293
MroNI GCCGGC 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 293
MseI TTAA 6 cut(s) 117, 431, 890, 902, 956, 1271
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 1 cut(s) 1222
MspR9I CCNGG 4 cut(s) 169, 240, 251, 754
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 4 cut(s) 169, 240, 251, 754
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
NaeI GCCGGC 1 cut(s) 1223
NdeII GATC 4 cut(s) 83, 144, 439, 503
NgoMIV GCCGGC 1 cut(s) 1221
NlaIII CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 2 cut(s) 695, 834
PaeI GCATGC 1 cut(s) 695
PciI ACATGT 1 cut(s) 830
PciSI GCTCTTC 2 cut(s) 141, 379
PctI GAATGC 1 cut(s) 1000
PdiI GCCGGC 1 cut(s) 1223
PfeI GAWTC 3 cut(s) 188, 749, 1296
Pfl23II CGTACG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 8 cut(s) 28, 31, 43, 371, 397, 790, 826, 1207
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 687
Psp1406I AACGTT 1 cut(s) 813
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 167, 238, 249, 752
PspGI CCWGG 4 cut(s) 167, 238, 249, 752
PspLI CGTACG 1 cut(s) 192
PspPI GGNCC 3 cut(s) 253, 1018, 1117
PspPPI RGGWCCY 1 cut(s) 253
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 3 cut(s) 194, 664, 1146
RsaNI GTAC 3 cut(s) 193, 663, 1145
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 2 cut(s) 141, 379
SaqAI TTAA 6 cut(s) 117, 431, 890, 902, 956, 1271
SatI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
Sau3AI GATC 4 cut(s) 83, 144, 439, 503
Sau96I GGNCC 3 cut(s) 253, 1018, 1117
ScaI AGTACT 2 cut(s) 664, 1146
ScrFI CCNGG 4 cut(s) 169, 240, 251, 754
SduI GDGCHC 2 cut(s) 459, 687
SfaNI GCATC 4 cut(s) 865, 1161, 1180, 1279
SfcI CTRYAG 1 cut(s) 1310
SinI GGWCC 2 cut(s) 253, 1018
SmlI CTYRAG 2 cut(s) 364, 848
SmoI CTYRAG 2 cut(s) 364, 848
SphI GCATGC 1 cut(s) 695
Sse9I AATT 5 cut(s) 268, 650, 735, 1049, 1281
SspMI CTAG 1 cut(s) 1244
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 4 cut(s) 167, 238, 249, 752
TaaI ACNGT 3 cut(s) 37, 222, 480
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 616, 1294
TasI AATT 5 cut(s) 268, 650, 735, 1049, 1281
TatI WGTACW 2 cut(s) 662, 1144
TauI GCSGC 3 cut(s) 44, 398, 827
TfiI GAWTC 3 cut(s) 188, 749, 1296
Tru1I TTAA 6 cut(s) 117, 431, 890, 902, 956, 1271
Tru9I TTAA 6 cut(s) 117, 431, 890, 902, 956, 1271
TscAI CASTG 5 cut(s) 16, 227, 459, 661, 775
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 5 cut(s) 26, 29, 369, 788, 1205
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 7 cut(s) 201, 345, 510, 601, 774, 1202, 1218
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 5 cut(s) 16, 227, 459, 661, 775
VpaK11BI GGWCC 2 cut(s) 253, 1018
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 650
XceI RCATGY 2 cut(s) 695, 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 835, 1012
XmiI GTMKAC 2 cut(s) 299, 726
XspI CTAG 1 cut(s) 1244
ZrmI AGTACT 2 cut(s) 664, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.