AT2G36220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014262
Physical Location & Seq
Forward (+)
15192480 .. 15193698
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36220.1

Sequence Viewer

Length: 792 bp
ATGCCACAAGTCGATATAGAAGCCTTTGTTTCTTCAGTATGCATCGGTGGCTCCGACCACCGCAAGATCGTATGCGAAACCCTCGCCGACGACTCAACGATCCCACCTTATTACAACAACTCCGCCGTTAGTCCGAGTGATTTCCCACCGGAATCTTATTTCTTGTCAAACGATGCTCAGCTAGAGTGGCTCAGCGACAACGCCTTCTTTGATCGTAAAGACTCACAAAAAGGAAACTCTGGGATTCTCAATTCTAATCCCAACTCGAATCCAAGCTCGCAACGGTTCTTACTAAAATCCAAAGCGTCGATCATCGGTTTGCCTAAACCGCAGAAAACGTGTTTCAACGAGGCAAAGCAACGGAGACACGCGGGCAAGAACCGGGTCATCTTGAAACGGGTCGGGTCAAGGATAAAGACGGATATTTCGCTTCTGGAACCTTCTTCTCCTAAAGTCTCTTGCATCGGTAGAGTGAGATCCAGAAGAGAACGCAGCCGCCGTATGCACCGTCAAAAATCAAGTCGGGTCGAACCGGTAAACCGGGTTAAGAAACCCGGGTTTATGGCGAGTTTCAGAGCTATTTTCAGGATCAAAGGCGGCTGCAAAGACGTGTCAGCGCGTGAGACTCACACGTCGACGAGAAACACACACGACATCAGGAGCCGACTTCCTGCGGAAGCTGATGAGAAGTCGGTATTCGACGGCGGAGAACCGGTGGTACCCGGTTTGGGTGGGATGACGCGTTTCGCATCTGGTAGAAGAGCGGATTTGTTGGGTGGTGGAGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.04

Weight (kDa)

10.06

Isoelectric Point (pI)

59.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 631
Acc65I GGTACC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 718
AccBSI CCGCTC 1 cut(s) 764
AccI GTMKAC 1 cut(s) 635
AccII CGCG 3 cut(s) 371, 619, 742
AciI CCGC 9 cut(s) 61, 123, 329, 371, 496, 597, 674, 705, 764
AclWI GGATC 3 cut(s) 94, 471, 596
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 1 cut(s) 720
AfiI CCNNNNNNNGG 1 cut(s) 728
AflIII ACRYGT 4 cut(s) 338, 609, 630, 740
AgeI ACCGGT 2 cut(s) 532, 712
AgsI TTSAA 2 cut(s) 346, 394
AjiI CACGTC 2 cut(s) 610, 633
AluBI AGCT 4 cut(s) 181, 276, 578, 680
AluI AGCT 4 cut(s) 181, 276, 578, 680
Alw26I GTCTC 3 cut(s) 358, 460, 617
AlwI GGATC 3 cut(s) 94, 471, 596
Ama87I CYCGRG 1 cut(s) 554
ApeKI GCWGC 2 cut(s) 492, 600
ArsI GACNNNNNNTTYG 4 cut(s) 409, 441, 505, 537
AsiGI ACCGGT 2 cut(s) 532, 712
Asp718I GGTACC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 619
AsuC2I CCSGG 5 cut(s) 383, 542, 555, 556, 723
AvaI CYCGRG 1 cut(s) 554
BanI GGYRCC 1 cut(s) 718
BbvI GCAGC 2 cut(s) 504, 587
BceAI ACGGC 3 cut(s) 110, 483, 718
BcnI CCSGG 5 cut(s) 383, 542, 555, 556, 723
BcoDI GTCTC 3 cut(s) 358, 460, 617
BfaI CTAG 1 cut(s) 182
BisI GCNGC 4 cut(s) 493, 496, 598, 601
BlpI GCTNAGC 2 cut(s) 177, 191
BlsI GCNGC 4 cut(s) 494, 497, 599, 602
Bme1390I CCNGG 5 cut(s) 383, 542, 555, 556, 723
BmeT110I CYCGRG 1 cut(s) 554
BmgBI CACGTC 2 cut(s) 610, 633
BmiI GGNNCC 4 cut(s) 52, 438, 662, 720
BmrFI CCNGG 5 cut(s) 383, 542, 555, 556, 723
BmsI GCATC 4 cut(s) 51, 163, 471, 758
Bpu1102I GCTNAGC 2 cut(s) 177, 191
BpuMI CCSGG 5 cut(s) 383, 542, 555, 556, 723
BsaJI CCNNGG 1 cut(s) 554
BsaWI WCCGGW 3 cut(s) 148, 532, 712
BsaXI ACNNNNNCTCC 4 cut(s) 104, 134, 699, 729
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse118I RCCGGY 2 cut(s) 532, 712
BseDI CCNNGG 1 cut(s) 554
BseGI GGATG 2 cut(s) 741, 791
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 2 cut(s) 191, 205
BseXI GCAGC 2 cut(s) 504, 587
Bsh1236I CGCG 3 cut(s) 371, 619, 742
BshNI GGYRCC 1 cut(s) 718
BshTI ACCGGT 2 cut(s) 532, 712
BsiHKCI CYCGRG 1 cut(s) 554
BsiSI CCGG 7 cut(s) 149, 382, 533, 541, 555, 713, 723
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 3 cut(s) 358, 460, 617
BsoBI CYCGRG 1 cut(s) 554
Bsp143I GATC 6 cut(s) 66, 99, 211, 309, 476, 588
Bsp1720I GCTNAGC 2 cut(s) 177, 191
BspACI CCGC 9 cut(s) 61, 123, 329, 371, 496, 597, 674, 705, 764
BspCNI CTCAG 2 cut(s) 190, 204
BspFNI CGCG 3 cut(s) 371, 619, 742
BspLI GGNNCC 4 cut(s) 52, 438, 662, 720
BspPI GGATC 3 cut(s) 94, 471, 596
BspQI GCTCTTC 1 cut(s) 754
BspT107I GGYRCC 1 cut(s) 718
BsrBI CCGCTC 1 cut(s) 764
BsrFI RCCGGY 2 cut(s) 532, 712
BssAI RCCGGY 2 cut(s) 532, 712
BssECI CCNNGG 1 cut(s) 554
BssMI GATC 6 cut(s) 66, 99, 211, 309, 476, 588
Bst4CI ACNGT 2 cut(s) 285, 509
Bst6I CTCTTC 2 cut(s) 478, 754
BstC8I GCNNGC 2 cut(s) 278, 373
BstDEI CTNAG 2 cut(s) 177, 191
BstF5I GGATG 2 cut(s) 741, 791
BstFNI CGCG 3 cut(s) 371, 619, 742
BstHHI GCGC 1 cut(s) 619
BstKTI GATC 6 cut(s) 69, 102, 214, 312, 479, 591
BstMAI GTCTC 3 cut(s) 358, 460, 617
BstMBI GATC 6 cut(s) 66, 99, 211, 309, 476, 588
BstMWI GCNNNNNNNGC 3 cut(s) 48, 187, 328
BstSCI CCNGG 5 cut(s) 381, 540, 553, 554, 721
BstUI CGCG 3 cut(s) 371, 619, 742
BstV1I GCAGC 2 cut(s) 504, 587
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BtrI CACGTC 2 cut(s) 610, 633
BtsCI GGATG 2 cut(s) 741, 791
Cac8I GCNNGC 2 cut(s) 278, 373
CfoI GCGC 1 cut(s) 619
Cfr10I RCCGGY 2 cut(s) 532, 712
Cfr9I CCCGGG 1 cut(s) 554
CseI GACGC 2 cut(s) 294, 748
Csp6I GTAC 1 cut(s) 719
CspAI ACCGGT 2 cut(s) 532, 712
CviQI GTAC 1 cut(s) 719
DdeI CTNAG 2 cut(s) 177, 191
DpnI GATC 6 cut(s) 68, 101, 213, 311, 478, 590
DpnII GATC 6 cut(s) 66, 99, 211, 309, 476, 588
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 478, 754
EarI CTCTTC 2 cut(s) 478, 754
EciI GGCGGA 2 cut(s) 112, 720
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 44
FaiI YATR 5 cut(s) 17, 40, 73, 503, 563
FauI CCCGC 1 cut(s) 364
FblI GTMKAC 1 cut(s) 635
Fnu4HI GCNGC 4 cut(s) 493, 496, 598, 601
FokI GGATG 1 cut(s) 748
Fsp4HI GCNGC 4 cut(s) 493, 496, 598, 601
FspBI CTAG 1 cut(s) 182
GlaI GCGC 1 cut(s) 618
GluI GCNGC 4 cut(s) 493, 496, 598, 601
HapII CCGG 7 cut(s) 149, 382, 533, 541, 555, 713, 723
HgaI GACGC 2 cut(s) 294, 748
HhaI GCGC 1 cut(s) 619
Hin6I GCGC 1 cut(s) 617
HinP1I GCGC 1 cut(s) 617
HincII GTYRAC 1 cut(s) 636
HindII GTYRAC 1 cut(s) 636
HinfI GANTC 6 cut(s) 92, 152, 221, 244, 268, 625
HpaII CCGG 7 cut(s) 149, 382, 533, 541, 555, 713, 723
Hpy166II GTNNAC 2 cut(s) 538, 636
Hpy188I TCNGA 3 cut(s) 55, 135, 575
Hpy188III TCNNGA 5 cut(s) 391, 434, 480, 586, 658
Hpy8I GTNNAC 2 cut(s) 538, 636
Hpy99I CGWCG 5 cut(s) 92, 310, 637, 640, 704
HpyAV CCTTC 2 cut(s) 214, 450
HpyCH4III ACNGT 2 cut(s) 285, 509
HpyCH4IV ACGT 3 cut(s) 338, 609, 632
HpyCH4V TGCA 4 cut(s) 42, 462, 505, 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 187, 328
HpyF3I CTNAG 2 cut(s) 177, 191
HpySE526I ACGT 3 cut(s) 338, 609, 632
HspAI GCGC 1 cut(s) 617
KpnI GGTACC 1 cut(s) 722
Kzo9I GATC 6 cut(s) 66, 99, 211, 309, 476, 588
LguI GCTCTTC 1 cut(s) 754
LmnI GCTCC 2 cut(s) 56, 660
Lsp1109I GCAGC 2 cut(s) 504, 587
LweI GCATC 4 cut(s) 51, 163, 471, 758
MaeI CTAG 1 cut(s) 182
MaeII ACGT 3 cut(s) 338, 609, 632
MalI GATC 6 cut(s) 68, 101, 213, 311, 478, 590
MbiI CCGCTC 1 cut(s) 764
MboI GATC 6 cut(s) 66, 99, 211, 309, 476, 588
MboII GAAGA 4 cut(s) 24, 435, 495, 771
MflI RGATCY 1 cut(s) 476
MluCI AATT 1 cut(s) 250
MluI ACGCGT 1 cut(s) 740
MlyI GAGTC 3 cut(s) 86, 215, 619
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 92, 343, 776
Mph1103I ATGCAT 1 cut(s) 44
MseI TTAA 1 cut(s) 546
MspI CCGG 7 cut(s) 149, 382, 533, 541, 555, 713, 723
MspR9I CCNGG 5 cut(s) 383, 542, 555, 556, 723
MvnI CGCG 3 cut(s) 371, 619, 742
MwoI GCNNNNNNNGC 3 cut(s) 48, 187, 328
NciI CCSGG 5 cut(s) 383, 542, 555, 556, 723
NdeII GATC 6 cut(s) 66, 99, 211, 309, 476, 588
NlaIV GGNNCC 4 cut(s) 52, 438, 662, 720
NsiI ATGCAT 1 cut(s) 44
PciSI GCTCTTC 1 cut(s) 754
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 496
PfeI GAWTC 3 cut(s) 152, 244, 268
PinAI ACCGGT 2 cut(s) 532, 712
PkrI GCNGC 4 cut(s) 494, 497, 599, 602
PleI GAGTC 3 cut(s) 86, 215, 619
PpsI GAGTC 3 cut(s) 86, 215, 619
PspN4I GGNNCC 4 cut(s) 52, 438, 662, 720
PsrI GAACNNNNNNTAC 2 cut(s) 702, 734
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 720
RsaNI GTAC 1 cut(s) 719
SalI GTCGAC 1 cut(s) 634
SapI GCTCTTC 1 cut(s) 754
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 4 cut(s) 493, 496, 598, 601
Sau3AI GATC 6 cut(s) 66, 99, 211, 309, 476, 588
SchI GAGTC 3 cut(s) 86, 215, 619
ScrFI CCNGG 5 cut(s) 383, 542, 555, 556, 723
SetI ASST 9 cut(s) 109, 183, 278, 341, 442, 580, 612, 635, 682
SfaNI GCATC 4 cut(s) 51, 163, 471, 758
SgrDI CGTCGACG 1 cut(s) 634
SmaI CCCGGG 1 cut(s) 556
Sse9I AATT 1 cut(s) 250
SsiI CCGC 9 cut(s) 61, 123, 329, 371, 496, 597, 674, 705, 764
SspMI CTAG 1 cut(s) 182
StyD4I CCNGG 5 cut(s) 381, 540, 553, 554, 721
TaaI ACNGT 2 cut(s) 285, 509
TaiI ACGT 3 cut(s) 341, 612, 635
TaqI TCGA 6 cut(s) 12, 266, 308, 528, 635, 699
TasI AATT 1 cut(s) 250
TauI GCSGC 2 cut(s) 498, 600
TfiI GAWTC 3 cut(s) 152, 244, 268
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TseI GCWGC 2 cut(s) 492, 600
TspGWI ACGGA 2 cut(s) 376, 434
TspMI CCCGGG 1 cut(s) 554
XmaI CCCGGG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 635
XspI CTAG 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.