AT3G52710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014262
Physical Location & Seq
Forward (+)
19534585 .. 19536018
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52710.1

Sequence Viewer

Length: 870 bp
ATGCCTCAAGTCGTTGCTTCAGCATGTACCGGTGGGTCTGACCGGAAAATCTCATGTGAAACTCTGGCCGACGATAACGAAGACTCACCTCATAACTCGAAGATCCGACCCGTATCCATCTCCGCCGTCGATTTTCCACCGGAATCTTACTCTTTATCAAAAGAAGCTCAGCTCGAATGGCTAAACGACAACGCCTTCTTCGAACGCAAAGAATCACAAAAAGGAAACTCTTCTGCTCCAATTTCGAATCCCAATACAAACCCTAATTCGAGCTCTCATCGAATCTCACTCAAATCAAAAGCGTCGATCATCAGATTACCGAAACCGCAGAAGACGTGTTTCAACGAAGCGAAGAAACGGAGAAATTGCAGAATCGCGAGGACTTTGATGATTCCGAAACGGATCGGGTCGAGATTGAAATCGGATCCTACGTTATCGGAGCCATGTTCTCCCAAGGTTTCTTGTATCGGAAGGGTTAGATCTAAACGTGATCGTAGCCGACGAATGCAGAGACAAAAATCCGGTCGAACCAATTCGTTTAAGGATAAACCGGTTCCGGTTAAGAAGCCTGGTTTTTTCGCTAGCTTCAGAGCTATTTTCAGAACCGGTGGCGGTTGCAAAGACTTATCTGCGAGTGGAGCTCACGCGCCTCGGAGGGATGTCGTAGTCTCTCCGCCGAGAGTTTCGGTGAGAAGATCGACGGATATTAGAGGACGGCTTCCGCCGGGAGACGTCGGGAAATCCTCGCCGCAGAGGAATAGTACCGGTTCGAGGAGATCAATTGACGGCGGTGAACCGGTTCTGCCTGGTTTAGGTGGGATGACTCGGTTTACTTCAGGGAGAAGACCGGATTTGTTGGTTGAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.69

Weight (kDa)

10.82

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
AccII CGCG 2 cut(s) 377, 647
AciI CCGC 7 cut(s) 123, 326, 612, 674, 722, 749, 789
AclWI GGATC 4 cut(s) 97, 410, 419, 432
AcoI YGGCCR 1 cut(s) 66
AcuI CTGAAG 2 cut(s) 571, 819
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 2 cut(s) 28, 763
AfiI CCNNNNNNNGG 2 cut(s) 771, 812
AflIII ACRYGT 1 cut(s) 335
AgeI ACCGGT 5 cut(s) 29, 550, 605, 764, 796
AgsI TTSAA 3 cut(s) 343, 418, 863
AjiI CACGTC 1 cut(s) 336
AjnI CCWGG 2 cut(s) 568, 805
AluBI AGCT 6 cut(s) 167, 172, 273, 585, 593, 641
AluI AGCT 6 cut(s) 167, 172, 273, 585, 593, 641
Alw21I GWGCWC 2 cut(s) 275, 643
Alw26I GTCTC 3 cut(s) 505, 673, 723
AlwI GGATC 4 cut(s) 97, 410, 419, 432
AoxI GGCC 1 cut(s) 66
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
AsiGI ACCGGT 5 cut(s) 29, 550, 605, 764, 796
Asp700I GAANNNNTTC 3 cut(s) 229, 532, 798
AspLEI GCGC 1 cut(s) 649
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 3 cut(s) 78, 700, 803
AsuII TTCGAA 2 cut(s) 201, 245
AsuNHI GCTAGC 1 cut(s) 581
BamHI GGATCC 1 cut(s) 424
BanII GRGCYC 2 cut(s) 275, 643
BbsI GAAGAC 3 cut(s) 87, 338, 850
Bbv12I GWGCWC 2 cut(s) 275, 643
BccI CCATC 1 cut(s) 125
BceAI ACGGC 3 cut(s) 110, 731, 802
BciT130I CCWGG 2 cut(s) 570, 807
BciVI GTATCC 1 cut(s) 124
BcnI CCSGG 1 cut(s) 726
BcoDI GTCTC 3 cut(s) 505, 673, 723
BfaI CTAG 1 cut(s) 582
BfuI GTATCC 1 cut(s) 124
BglII AGATCT 1 cut(s) 479
BisI GCNGC 1 cut(s) 749
BlpI GCTNAGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 750
Bme1390I CCNGG 3 cut(s) 570, 726, 807
BmgBI CACGTC 1 cut(s) 336
BmiI GGNNCC 3 cut(s) 426, 441, 555
BmrFI CCNGG 3 cut(s) 570, 726, 807
BmtI GCTAGC 1 cut(s) 585
BpiI GAAGAC 3 cut(s) 87, 338, 850
BplI GAGNNNNNCTC 2 cut(s) 625, 657
Bpu1102I GCTNAGC 1 cut(s) 168
Bpu14I TTCGAA 2 cut(s) 201, 245
BpuMI CCSGG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 418
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 453, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 771, 812
Bse118I RCCGGY 5 cut(s) 29, 550, 605, 764, 796
Bse8I GATNNNNATC 1 cut(s) 418
BseBI CCWGG 2 cut(s) 570, 807
BseDI CCNNGG 2 cut(s) 453, 650
BseGI GGATG 2 cut(s) 664, 825
BseJI GATNNNNATC 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 771, 812
BseMII CTCAG 1 cut(s) 182
BseRI GAGGAG 1 cut(s) 787
Bsh1236I CGCG 2 cut(s) 377, 647
Bsh1285I CGRYCG 1 cut(s) 526
BshFI GGCC 1 cut(s) 68
BshTI ACCGGT 5 cut(s) 29, 550, 605, 764, 796
BsiEI CGRYCG 1 cut(s) 526
BsiHKAI GWGCWC 2 cut(s) 275, 643
BslI CCNNNNNNNGG 2 cut(s) 771, 812
BsmAI GTCTC 3 cut(s) 505, 673, 723
BsmBI CGTCTC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 1 cut(s) 68
Bsp119I TTCGAA 2 cut(s) 201, 245
Bsp1286I GDGCHC 2 cut(s) 275, 643
Bsp143I GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
Bsp1720I GCTNAGC 1 cut(s) 168
Bsp68I TCGCGA 1 cut(s) 377
BspACI CCGC 7 cut(s) 123, 326, 612, 674, 722, 749, 789
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 377, 647
BspLI GGNNCC 3 cut(s) 426, 441, 555
BspOI GCTAGC 1 cut(s) 585
BspPI GGATC 4 cut(s) 97, 410, 419, 432
BspT104I TTCGAA 2 cut(s) 201, 245
BsrFI RCCGGY 5 cut(s) 29, 550, 605, 764, 796
BssAI RCCGGY 5 cut(s) 29, 550, 605, 764, 796
BssECI CCNNGG 2 cut(s) 453, 650
BssMI GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 2 cut(s) 570, 807
Bst6I CTCTTC 1 cut(s) 235
BstACI GRCGYC 1 cut(s) 732
BstBI TTCGAA 2 cut(s) 201, 245
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 1 cut(s) 168
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 2 cut(s) 664, 825
BstFNI CGCG 2 cut(s) 377, 647
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 8 cut(s) 105, 309, 405, 427, 482, 493, 698, 779
BstMAI GTCTC 3 cut(s) 505, 673, 723
BstMBI GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
BstMCI CGRYCG 1 cut(s) 526
BstMWI GCNNNNNNNGC 2 cut(s) 178, 638
BstNI CCWGG 2 cut(s) 570, 807
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 3 cut(s) 568, 724, 805
BstUI CGCG 2 cut(s) 377, 647
BstV2I GAAGAC 3 cut(s) 87, 338, 850
BstX2I RGATCY 3 cut(s) 102, 424, 479
BstYI RGATCY 3 cut(s) 102, 424, 479
BsuI GTATCC 1 cut(s) 124
BsuRI GGCC 1 cut(s) 68
BtrI CACGTC 1 cut(s) 336
BtsCI GGATG 2 cut(s) 664, 825
BtuMI TCGCGA 1 cut(s) 377
Cac8I GCNNGC 1 cut(s) 583
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 5 cut(s) 29, 550, 605, 764, 796
CseI GACGC 1 cut(s) 291
Csp6I GTAC 2 cut(s) 27, 762
CspAI ACCGGT 5 cut(s) 29, 550, 605, 764, 796
CviAII CATG 3 cut(s) 24, 54, 444
CviQI GTAC 2 cut(s) 27, 762
DdeI CTNAG 1 cut(s) 168
DpnI GATC 8 cut(s) 104, 308, 404, 426, 481, 492, 697, 778
DpnII GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 235
EarI CTCTTC 1 cut(s) 235
EciI GGCGGA 3 cut(s) 112, 663, 711
Ecl136II GAGCTC 2 cut(s) 273, 641
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 2 cut(s) 275, 643
Eco53kI GAGCTC 2 cut(s) 273, 641
Eco57I CTGAAG 2 cut(s) 571, 819
EcoICRI GAGCTC 2 cut(s) 273, 641
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoRII CCWGG 2 cut(s) 568, 805
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 275, 643
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 3 cut(s) 27, 57, 447
FaiI YATR 4 cut(s) 25, 55, 93, 445
FatI CATG 3 cut(s) 23, 53, 443
Fnu4HI GCNGC 1 cut(s) 749
FokI GGATG 2 cut(s) 671, 832
FriOI GRGCYC 2 cut(s) 275, 643
Fsp4HI GCNGC 1 cut(s) 749
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 648
GluI GCNGC 1 cut(s) 749
HaeIII GGCC 1 cut(s) 68
HgaI GACGC 1 cut(s) 291
HhaI GCGC 1 cut(s) 649
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 3 cut(s) 27, 57, 447
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 8 cut(s) 83, 143, 212, 247, 282, 372, 391, 823
HphI GGTGA 3 cut(s) 78, 700, 803
Hpy166II GTNNAC 2 cut(s) 794, 831
Hpy188III TCNNGA 3 cut(s) 376, 411, 736
Hpy8I GTNNAC 2 cut(s) 794, 831
Hpy99I CGWCG 6 cut(s) 74, 131, 307, 504, 703, 737
HpyAV CCTTC 2 cut(s) 205, 465
HpyCH4IV ACGT 4 cut(s) 335, 431, 487, 732
HpyCH4V TGCA 3 cut(s) 369, 508, 618
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 638
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 4 cut(s) 335, 431, 487, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 3 cut(s) 27, 57, 447
HspAI GCGC 1 cut(s) 647
Kzo9I GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
LmnI GCTCC 3 cut(s) 241, 439, 638
MaeI CTAG 1 cut(s) 582
MaeII ACGT 4 cut(s) 335, 431, 487, 732
MalI GATC 8 cut(s) 104, 308, 404, 426, 481, 492, 697, 778
MboI GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
MboII GAAGA 8 cut(s) 92, 112, 190, 222, 343, 364, 705, 855
MfeI CAATTG 1 cut(s) 780
MflI RGATCY 3 cut(s) 102, 424, 479
MhlI GDGCHC 2 cut(s) 275, 643
MluCI AATT 5 cut(s) 240, 265, 364, 532, 780
MlyI GAGTC 2 cut(s) 77, 817
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 9 cut(s) 15, 99, 372, 648, 660, 704, 747, 754, 765
MroXI GAANNNNTTC 3 cut(s) 229, 532, 798
MseI TTAA 2 cut(s) 540, 561
MspR9I CCNGG 3 cut(s) 570, 726, 807
MunI CAATTG 1 cut(s) 780
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 2 cut(s) 570, 807
MvnI CGCG 2 cut(s) 377, 647
MwoI GCNNNNNNNGC 2 cut(s) 178, 638
NciI CCSGG 1 cut(s) 726
NdeII GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
NheI GCTAGC 1 cut(s) 581
NlaIII CATG 3 cut(s) 27, 57, 447
NlaIV GGNNCC 3 cut(s) 426, 441, 555
NmeAIII GCCGAG 1 cut(s) 702
NruI TCGCGA 1 cut(s) 377
NspI RCATGY 1 cut(s) 27
NspV TTCGAA 2 cut(s) 201, 245
PcsI WCGNNNNNNNCGW 3 cut(s) 198, 428, 499
PctI GAATGC 1 cut(s) 510
PdmI GAANNNNTTC 3 cut(s) 229, 532, 798
PfeI GAWTC 6 cut(s) 143, 212, 247, 282, 372, 391
PinAI ACCGGT 5 cut(s) 29, 550, 605, 764, 796
PkrI GCNGC 1 cut(s) 750
PleI GAGTC 2 cut(s) 77, 817
PpsI GAGTC 2 cut(s) 77, 817
Psp124BI GAGCTC 2 cut(s) 275, 643
Psp6I CCWGG 2 cut(s) 568, 805
PspGI CCWGG 2 cut(s) 568, 805
PspN4I GGNNCC 3 cut(s) 426, 441, 555
PsuI RGATCY 3 cut(s) 102, 424, 479
RruI TCGCGA 1 cut(s) 377
RsaI GTAC 2 cut(s) 28, 763
RsaNI GTAC 2 cut(s) 27, 762
SacI GAGCTC 2 cut(s) 275, 643
SaqAI TTAA 2 cut(s) 540, 561
SatI GCNGC 1 cut(s) 749
Sau3AI GATC 8 cut(s) 102, 306, 402, 424, 479, 490, 695, 776
SchI GAGTC 2 cut(s) 77, 817
ScrFI CCNGG 3 cut(s) 570, 726, 807
SduI GDGCHC 2 cut(s) 275, 643
SfuI TTCGAA 2 cut(s) 201, 245
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
Sse9I AATT 5 cut(s) 240, 265, 364, 532, 780
SsiI CCGC 7 cut(s) 123, 326, 612, 674, 722, 749, 789
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 2 cut(s) 275, 643
StyD4I CCNGG 3 cut(s) 568, 724, 805
StyI CCWWGG 1 cut(s) 453
TaiI ACGT 4 cut(s) 338, 434, 490, 735
TasI AATT 5 cut(s) 240, 265, 364, 532, 780
TauI GCSGC 1 cut(s) 751
TfiI GAWTC 6 cut(s) 143, 212, 247, 282, 372, 391
Tru1I TTAA 2 cut(s) 540, 561
Tru9I TTAA 2 cut(s) 540, 561
TspGWI ACGGA 3 cut(s) 373, 415, 716
XagI CCTNNNNNAGG 1 cut(s) 810
XceI RCATGY 1 cut(s) 27
XmnI GAANNNNTTC 3 cut(s) 229, 532, 798
XspI CTAG 1 cut(s) 582
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.