Prupe.7G109200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014262
Physical Location & Seq
Forward (+)
13732967 .. 13734600
1634 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G109200.1

Sequence Viewer

Length: 891 bp
ATGCCACAAGTCGATTTGGAAACCCTAGTATCGGCGTGTGCGGGCGGCTCAATGGATCGAAAAATTGCCTGTGAGACGCAGGCCGACGCCATCACCGGAGTCCAAGACCCGCCCGAGGAGGACGATGCCGACGAACCGGCGGTGCCGCCGGATTTCCCTCCGGAATCCTTCTGGCTCTCGAAAGACGCCGAGTACGATTGGTTCGATCGTAACGCCTTCTTCGAGCGCAAAGACTCCACGAAAGGAAACTCCAACTCCAATAACTTGAATCCGAATCCGAATCACTCCAATTCCAACTCTCAGAGGTTTTCACTGAACTTGAAGTCCAAGGCTGCGATTATCGGCCTACCGAAGCCGCAGAAGCACAACTACGTCGACACTAAGAATCGGAGGAATTGCAAGGCAGGAAACACTAGACTGTTTCCCAAACGCTCCGGATCGGTCGGGAAATCGGACGCTCCGATGATCGAACCGTCGTCTCCCAAGGTCTCGTGTATGGGAAGGGTGAGATCAAAGAGGGATCGGAAGCGCCGGTTTCGGAATCGGCAGAGATCGTCGGCCGAGTCGTCCATGGAGAAGGCCATCAAGCCGGTGGAGAGACGAAAAACCGGCTTCTTCGCGAGTTTTCGGGCGATGTTTCGGCACGGCCACCGAGACAAGTCGGCCAAATCGCCCTACGCGGCGGCGGACTCGCCTCCGAGACACAGCAGCGTGATGTCGGGGAGAGCGCGTGATCGGTCGGCGGCGTATGATTTCGACACGCTGTCCATCGACTCGCTTCCGAGACAAAGCGTGGAGAGCGAACCCCCCGGTTTGGGCGGCATGAAGCGCTTCGTTTCGGGTCGGAGGTCCGGGTCGTGGGTGGGCGAAGCCGGTATCGACGTGGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

32.83

Weight (kDa)

9.78

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 375
AccII CGCG 3 cut(s) 620, 680, 730
AccIII TCCGGA 2 cut(s) 160, 434
AclWI GGATC 3 cut(s) 63, 445, 528
AcoI YGGCCR 3 cut(s) 558, 646, 663
AcyI GRCGYC 2 cut(s) 87, 186
AfaI GTAC 1 cut(s) 194
AfeI AGCGCT 1 cut(s) 830
AfiI CCNNNNNNNGG 5 cut(s) 31, 115, 814, 815, 858
AgsI TTSAA 2 cut(s) 268, 322
AhdI GACNNNNNGTC 1 cut(s) 763
AjiI CACGTC 1 cut(s) 883
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
Alw26I GTCTC 7 cut(s) 68, 483, 493, 592, 648, 694, 778
AlwI GGATC 3 cut(s) 63, 445, 528
Ama87I CYCGRG 1 cut(s) 113
Aor13HI TCCGGA 2 cut(s) 160, 434
Aor51HI AGCGCT 1 cut(s) 830
AoxI GGCC 6 cut(s) 81, 343, 558, 579, 646, 663
ApeKI GCWGC 2 cut(s) 332, 708
Asp700I GAANNNNTTC 1 cut(s) 830
AspLEI GCGC 4 cut(s) 228, 531, 730, 831
AspS9I GGNCC 1 cut(s) 849
AsuC2I CCSGG 2 cut(s) 810, 853
AsuHPI GGTGA 2 cut(s) 85, 517
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 849
BaeI ACNNNNGTAYC 2 cut(s) 12, 45
BanI GGYRCC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BauI CACGAG 1 cut(s) 490
BbvI GCAGC 2 cut(s) 319, 720
BccI CCATC 3 cut(s) 98, 590, 776
BceAI ACGGC 1 cut(s) 661
BcnI CCSGG 2 cut(s) 810, 853
BcoDI GTCTC 7 cut(s) 68, 483, 493, 592, 648, 694, 778
BfaI CTAG 2 cut(s) 26, 414
BfoI RGCGCY 2 cut(s) 532, 832
BisI GCNGC 9 cut(s) 46, 146, 333, 356, 681, 684, 709, 744, 820
BlsI GCNGC 9 cut(s) 47, 147, 334, 357, 682, 685, 710, 745, 821
Bme1390I CCNGG 2 cut(s) 810, 853
Bme18I GGWCC 1 cut(s) 849
BmeRI GACNNNNNGTC 1 cut(s) 763
BmeT110I CYCGRG 1 cut(s) 113
BmgBI CACGTC 1 cut(s) 883
BmgT120I GGNCC 1 cut(s) 849
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 810, 853
BmsI GCATC 1 cut(s) 115
BpuMI CCSGG 2 cut(s) 810, 853
BsaHI GRCGYC 2 cut(s) 87, 186
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 5 cut(s) 114, 327, 483, 570, 808
BsaWI WCCGGW 3 cut(s) 95, 160, 434
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 715, 745
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 115, 814, 815, 858
Bse118I RCCGGY 5 cut(s) 136, 531, 589, 608, 872
BseAI TCCGGA 2 cut(s) 160, 434
BseDI CCNNGG 5 cut(s) 114, 327, 483, 570, 808
BseLI CCNNNNNNNGG 5 cut(s) 31, 115, 814, 815, 858
BseMII CTCAG 1 cut(s) 314
BseRI GAGGAG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 558
BseXI GCAGC 2 cut(s) 319, 720
Bsh1236I CGCG 3 cut(s) 620, 680, 730
Bsh1285I CGRYCG 4 cut(s) 208, 444, 561, 740
BshFI GGCC 6 cut(s) 83, 345, 560, 581, 648, 665
BshNI GGYRCC 1 cut(s) 142
BsiEI CGRYCG 4 cut(s) 208, 444, 561, 740
BsiHKCI CYCGRG 1 cut(s) 113
BslI CCNNNNNNNGG 5 cut(s) 31, 115, 814, 815, 858
BsmAI GTCTC 7 cut(s) 68, 483, 493, 592, 648, 694, 778
BsmBI CGTCTC 3 cut(s) 68, 483, 592
BsnI GGCC 6 cut(s) 83, 345, 560, 581, 648, 665
Bso31I GGTCTC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 113
Bsp13I TCCGGA 2 cut(s) 160, 434
Bsp143I GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
Bsp19I CCATGG 1 cut(s) 570
Bsp68I TCGCGA 1 cut(s) 620
BspANI GGCC 6 cut(s) 83, 345, 560, 581, 648, 665
BspCNI CTCAG 1 cut(s) 313
BspEI TCCGGA 2 cut(s) 160, 434
BspFNI CGCG 3 cut(s) 620, 680, 730
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 3 cut(s) 63, 445, 528
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 493
BsrFI RCCGGY 5 cut(s) 136, 531, 589, 608, 872
BssAI RCCGGY 5 cut(s) 136, 531, 589, 608, 872
BssECI CCNNGG 5 cut(s) 114, 327, 483, 570, 808
BssMI GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
BssNI GRCGYC 2 cut(s) 87, 186
BssSI CACGAG 1 cut(s) 490
BssT1I CCWWGG 3 cut(s) 327, 483, 570
Bst2BI CACGAG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 420, 474
BstACI GRCGYC 2 cut(s) 87, 186
BstC8I GCNNGC 2 cut(s) 43, 81
BstDEI CTNAG 2 cut(s) 300, 381
BstDSI CCRYGG 1 cut(s) 570
BstFNI CGCG 3 cut(s) 620, 680, 730
BstH2I RGCGCY 2 cut(s) 532, 832
BstHHI GCGC 4 cut(s) 228, 531, 730, 831
BstKTI GATC 8 cut(s) 58, 208, 440, 468, 512, 523, 554, 736
BstMAI GTCTC 7 cut(s) 68, 483, 493, 592, 648, 694, 778
BstMBI GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
BstMCI CGRYCG 4 cut(s) 208, 444, 561, 740
BstMWI GCNNNNNNNGC 3 cut(s) 361, 798, 828
BstSCI CCNGG 2 cut(s) 808, 851
BstUI CGCG 3 cut(s) 620, 680, 730
BstV1I GCAGC 2 cut(s) 319, 720
BstZI CGGCCG 1 cut(s) 558
BsuRI GGCC 6 cut(s) 83, 345, 560, 581, 648, 665
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 647
BtrI CACGTC 1 cut(s) 883
BtsIMutI CAGTG 1 cut(s) 311
BtuMI TCGCGA 1 cut(s) 620
Cac8I GCNNGC 2 cut(s) 43, 81
CfoI GCGC 4 cut(s) 228, 531, 730, 831
Cfr10I RCCGGY 5 cut(s) 136, 531, 589, 608, 872
Cfr13I GGNCC 1 cut(s) 849
CseI GACGC 4 cut(s) 85, 95, 194, 464
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 571, 823
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 300, 381
DpnI GATC 8 cut(s) 57, 207, 439, 467, 511, 522, 553, 735
DpnII GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
DriI GACNNNNNGTC 1 cut(s) 763
EaeI YGGCCR 3 cut(s) 558, 646, 663
EagI CGGCCG 1 cut(s) 558
Eam1105I GACNNNNNGTC 1 cut(s) 763
EciI GGCGGA 1 cut(s) 701
EclXI CGGCCG 1 cut(s) 558
Eco130I CCWWGG 3 cut(s) 327, 483, 570
Eco31I GGTCTC 1 cut(s) 493
Eco47I GGWCC 1 cut(s) 849
Eco47III AGCGCT 1 cut(s) 830
Eco52I CGGCCG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 113
EcoT14I CCWWGG 3 cut(s) 327, 483, 570
ErhI CCWWGG 3 cut(s) 327, 483, 570
Esp3I CGTCTC 3 cut(s) 68, 483, 592
FaeI CATG 2 cut(s) 574, 826
FaiI YATR 4 cut(s) 497, 572, 750, 824
FatI CATG 2 cut(s) 570, 822
FauI CCCGC 2 cut(s) 34, 117
FblI GTMKAC 1 cut(s) 375
Fnu4HI GCNGC 9 cut(s) 46, 146, 333, 356, 681, 684, 709, 744, 820
Fsp4HI GCNGC 9 cut(s) 46, 146, 333, 356, 681, 684, 709, 744, 820
FspBI CTAG 2 cut(s) 26, 414
GlaI GCGC 4 cut(s) 227, 530, 729, 830
GluI GCNGC 9 cut(s) 46, 146, 333, 356, 681, 684, 709, 744, 820
HaeII RGCGCY 2 cut(s) 532, 832
HaeIII GGCC 6 cut(s) 83, 345, 560, 581, 648, 665
HgaI GACGC 4 cut(s) 85, 95, 194, 464
HhaI GCGC 4 cut(s) 228, 531, 730, 831
Hin1I GRCGYC 2 cut(s) 87, 186
Hin1II CATG 2 cut(s) 574, 826
Hin6I GCGC 4 cut(s) 226, 529, 728, 829
HinP1I GCGC 4 cut(s) 226, 529, 728, 829
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HphI GGTGA 2 cut(s) 85, 517
Hpy166II GTNNAC 1 cut(s) 376
Hpy188III TCNNGA 5 cut(s) 161, 178, 435, 445, 619
Hpy8I GTNNAC 1 cut(s) 376
Hpy99I CGWCG 6 cut(s) 89, 134, 377, 478, 559, 884
HpyAV CCTTC 4 cut(s) 178, 226, 495, 571
HpyCH4III ACNGT 2 cut(s) 420, 474
HpyCH4IV ACGT 2 cut(s) 372, 882
HpyCH4V TGCA 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 3 cut(s) 361, 798, 828
HpyF3I CTNAG 2 cut(s) 300, 381
HpySE526I ACGT 2 cut(s) 372, 882
Hsp92I GRCGYC 2 cut(s) 87, 186
Hsp92II CATG 2 cut(s) 574, 826
HspAI GCGC 4 cut(s) 226, 529, 728, 829
Kpn2I TCCGGA 2 cut(s) 160, 434
Kzo9I GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
LmnI GCTCC 2 cut(s) 437, 463
Lsp1109I GCAGC 2 cut(s) 319, 720
LweI GCATC 1 cut(s) 115
MaeI CTAG 2 cut(s) 26, 414
MaeII ACGT 2 cut(s) 372, 882
MaeIII GTNAC 1 cut(s) 209
MalI GATC 8 cut(s) 57, 207, 439, 467, 511, 522, 553, 735
MboI GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
MboII GAAGA 2 cut(s) 211, 607
MluCI AATT 3 cut(s) 63, 289, 394
MlyI GAGTC 5 cut(s) 108, 227, 572, 683, 767
MmeI TCCRAC 3 cut(s) 276, 318, 824
MnlI CCTC 8 cut(s) 109, 112, 168, 297, 384, 510, 705, 840
MroI TCCGGA 2 cut(s) 160, 434
MroXI GAANNNNTTC 1 cut(s) 830
MspR9I CCNGG 2 cut(s) 810, 853
MvnI CGCG 3 cut(s) 620, 680, 730
MwoI GCNNNNNNNGC 3 cut(s) 361, 798, 828
NciI CCSGG 2 cut(s) 810, 853
NcoI CCATGG 1 cut(s) 570
NdeII GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
NlaIII CATG 2 cut(s) 574, 826
NlaIV GGNNCC 1 cut(s) 144
NmeAIII GCCGAG 2 cut(s) 214, 586
NruI TCGCGA 1 cut(s) 620
PcsI WCGNNNNNNNCGW 6 cut(s) 129, 192, 201, 219, 458, 563
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 6 cut(s) 164, 268, 274, 280, 385, 541
PkrI GCNGC 9 cut(s) 47, 147, 334, 357, 682, 685, 710, 745, 821
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 5 cut(s) 107, 227, 571, 683, 767
PpsI GAGTC 5 cut(s) 107, 227, 571, 683, 767
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 849
PsrI GAACNNNNNNTAC 2 cut(s) 185, 217
PvuI CGATCG 1 cut(s) 208
RruI TCGCGA 1 cut(s) 620
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SalI GTCGAC 1 cut(s) 374
SatI GCNGC 9 cut(s) 46, 146, 333, 356, 681, 684, 709, 744, 820
Sau3AI GATC 8 cut(s) 55, 205, 437, 465, 509, 520, 551, 733
Sau96I GGNCC 1 cut(s) 849
SchI GAGTC 5 cut(s) 108, 227, 572, 683, 767
ScrFI CCNGG 2 cut(s) 810, 853
SetI ASST 5 cut(s) 308, 375, 489, 851, 885
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 849
Sse9I AATT 3 cut(s) 63, 289, 394
SspMI CTAG 2 cut(s) 26, 414
StyD4I CCNGG 2 cut(s) 808, 851
StyI CCWWGG 3 cut(s) 327, 483, 570
TaaI ACNGT 2 cut(s) 420, 474
TaiI ACGT 2 cut(s) 375, 885
TaqII GACCGA 2 cut(s) 430, 726
TasI AATT 3 cut(s) 63, 289, 394
TauI GCSGC 7 cut(s) 48, 148, 358, 683, 686, 746, 822
TfiI GAWTC 6 cut(s) 164, 268, 274, 280, 385, 541
TscAI CASTG 1 cut(s) 318
TseI GCWGC 2 cut(s) 332, 708
TspDTI ATGAA 1 cut(s) 839
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
XmiI GTMKAC 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 2 cut(s) 26, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.