FvH4_6g18850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014262
Physical Location & Seq
Reverse (-)
12418848 .. 12419726
879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18850.t1

Sequence Viewer

Length: 879 bp
ATGCCACAAGTCGATTTGGAAACCCTAGTTACCGCCTGCGCCGGCGGCTCCATGGATCGCAAAATCGCCTGCGAGTCGCAGGCCGACGCCGCCGAGAAGGACCTGCCGGAAGACGACGCCAACCCCGACGACCCGGTTCTCCCGGCGGACTTCCCGCCGGAGTCGTTCTGGCTCTCCAAGGACGCCGAGTACGACTGGTTCGACCGGAACGCCTTCTACGAGAGGAAGGACTCCACCAAAGGAAACAACTCCAGCTCCACCAACCTGCATCCCAATTCGAACAACAATTCGCAGCGATTCTCGATGAACTTGAAGTCCAAGGCGGCCATTATTGGCCTCCCCAAGCCGCAGAAGACCAACTACGCCGATACGAAGCACCGCCGGAACTGTAAGGCCGGCAACGGGCGGCTGTTTCCGAAGCGGTCCGGATCGGTCGGGAAATCGACGGACGGGTCGATGATCGAGCCGTCGTCGCCCAAGGTCTCGTGTATGGGGAGAGTCAGATCGAAGCGGGACCGGAAGCGGCGGTGGAGGAACCGCCACCAGCAGCGGTCGTCGATAAACGACACGTCGTCGTCGATGGAGAAGTCGGTTAAACCGGCGGAGAGACGCAAGTTAGGGTTTCTAGCGAGCTTCCGGGGCCTGTTTCGGCACGGGCGACGTGATAAGTCGAAGAGTGACGTCCACGCGCCGGACTCGCCGCCGAGGCGGAGCAGCGTGGCGAGGAGAGCTGCGTTCGATTACGAGACGGCGTCGTGCGACTCGTTCCCGAGGCAGAGCACGGAGAGCGAACCGCCCGGCCTAGGTGGGATGAAGCGGTTCGTGTCGGGTCGGAGATCCGGGTCCTGGGTCGGGGAGCACGGCATCGACGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.56

Weight (kDa)

9.83

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
AatII GACGTC 2 cut(s) 684, 873
Acc36I ACCTGC 2 cut(s) 111, 273
AccII CGCG 2 cut(s) 689, 875
AccIII TCCGGA 1 cut(s) 425
AclWI GGATC 3 cut(s) 63, 436, 831
AcoI YGGCCR 1 cut(s) 324
AcyI GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 402, 691, 803, 846, 852
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 1 cut(s) 313
AhdI GACNNNNNGTC 1 cut(s) 571
AjiI CACGTC 2 cut(s) 570, 662
AjnI CCWGG 1 cut(s) 845
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 255, 633, 731
AluI AGCT 3 cut(s) 255, 633, 731
Alw21I GWGCWC 2 cut(s) 782, 861
Alw26I GTCTC 3 cut(s) 487, 601, 740
AlwI GGATC 3 cut(s) 63, 436, 831
Ama87I CYCGRG 1 cut(s) 769
Aor13HI TCCGGA 1 cut(s) 425
AoxI GGCC 6 cut(s) 81, 324, 334, 393, 640, 799
ApeKI GCWGC 4 cut(s) 292, 547, 714, 731
Asp700I GAANNNNTTC 2 cut(s) 212, 818
AspA2I CCTAGG 1 cut(s) 802
AspLEI GCGC 2 cut(s) 41, 691
AspS9I GGNCC 5 cut(s) 100, 423, 514, 640, 843
AsuC2I CCSGG 5 cut(s) 134, 143, 638, 798, 841
AsuII TTCGAA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 769
AvaII GGWCC 4 cut(s) 100, 423, 514, 843
AvrII CCTAGG 1 cut(s) 802
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BauI CACGAG 1 cut(s) 484
BbsI GAAGAC 2 cut(s) 117, 359
Bbv12I GWGCWC 2 cut(s) 782, 861
BbvI GCAGC 4 cut(s) 304, 559, 718, 726
BccI CCATC 1 cut(s) 574
BceAI ACGGC 3 cut(s) 451, 765, 877
BcgI CGANNNNNNTGC 1 cut(s) 853
BciT130I CCWGG 1 cut(s) 847
BcnI CCSGG 5 cut(s) 134, 143, 638, 798, 841
BcoDI GTCTC 3 cut(s) 487, 601, 740
BfaI CTAG 3 cut(s) 26, 626, 803
BfuAI ACCTGC 2 cut(s) 111, 273
BglI GCCNNNNNGGC 1 cut(s) 706
BlnI CCTAGG 1 cut(s) 802
Bme1390I CCNGG 6 cut(s) 134, 143, 638, 798, 841, 847
Bme18I GGWCC 4 cut(s) 100, 423, 514, 843
BmeRI GACNNNNNGTC 1 cut(s) 571
BmeT110I CYCGRG 1 cut(s) 769
BmgBI CACGTC 2 cut(s) 570, 662
BmgT120I GGNCC 5 cut(s) 100, 423, 514, 640, 843
BmiI GGNNCC 5 cut(s) 49, 515, 536, 641, 844
BmrFI CCNGG 6 cut(s) 134, 143, 638, 798, 841, 847
BmsI GCATC 2 cut(s) 277, 873
BpiI GAAGAC 2 cut(s) 117, 359
BpmI CTGGAG 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 5 cut(s) 134, 143, 638, 798, 841
BsaHI GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 9 cut(s) 51, 177, 318, 477, 637, 704, 770, 802, 846
BsaWI WCCGGW 3 cut(s) 204, 425, 516
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 5 cut(s) 402, 691, 803, 846, 852
Bse118I RCCGGY 3 cut(s) 41, 395, 598
Bse1I ACTGG 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 425
BseBI CCWGG 1 cut(s) 847
BseDI CCNNGG 9 cut(s) 51, 177, 318, 477, 637, 704, 770, 802, 846
BseGI GGATG 2 cut(s) 268, 816
BseLI CCNNNNNNNGG 5 cut(s) 402, 691, 803, 846, 852
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 739
BseXI GCAGC 4 cut(s) 304, 559, 718, 726
Bsh1236I CGCG 2 cut(s) 689, 875
Bsh1285I CGRYCG 3 cut(s) 205, 435, 554
BshFI GGCC 6 cut(s) 83, 326, 336, 395, 642, 801
BsiEI CGRYCG 3 cut(s) 205, 435, 554
BsiHKAI GWGCWC 2 cut(s) 782, 861
BsiHKCI CYCGRG 1 cut(s) 769
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 5 cut(s) 402, 691, 803, 846, 852
BsmAI GTCTC 3 cut(s) 487, 601, 740
BsmBI CGTCTC 2 cut(s) 601, 740
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 6 cut(s) 83, 326, 336, 395, 642, 801
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 782, 861
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 5 cut(s) 55, 428, 459, 503, 836
Bsp19I CCATGG 1 cut(s) 51
BspANI GGCC 6 cut(s) 83, 326, 336, 395, 642, 801
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 2 cut(s) 689, 875
BspLI GGNNCC 5 cut(s) 49, 515, 536, 641, 844
BspMI ACCTGC 2 cut(s) 111, 273
BspPI GGATC 3 cut(s) 63, 436, 831
BspT104I TTCGAA 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 487
BsrFI RCCGGY 3 cut(s) 41, 395, 598
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 3 cut(s) 41, 395, 598
BssECI CCNNGG 9 cut(s) 51, 177, 318, 477, 637, 704, 770, 802, 846
BssMI GATC 5 cut(s) 55, 428, 459, 503, 836
BssNI GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
BssSI CACGAG 1 cut(s) 484
BssT1I CCWWGG 5 cut(s) 51, 177, 318, 477, 802
Bst2BI CACGAG 1 cut(s) 484
Bst2UI CCWGG 1 cut(s) 847
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 668
BstACI GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 6 cut(s) 37, 43, 70, 81, 397, 631
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 268, 816
BstFNI CGCG 2 cut(s) 689, 875
BstHHI GCGC 2 cut(s) 41, 691
BstKTI GATC 5 cut(s) 58, 431, 462, 506, 839
BstMAI GTCTC 3 cut(s) 487, 601, 740
BstMBI GATC 5 cut(s) 55, 428, 459, 503, 836
BstMCI CGRYCG 3 cut(s) 205, 435, 554
BstMWI GCNNNNNNNGC 8 cut(s) 45, 89, 472, 639, 697, 706, 728, 786
BstNI CCWGG 1 cut(s) 847
BstSCI CCNGG 6 cut(s) 132, 141, 636, 796, 839, 845
BstUI CGCG 2 cut(s) 689, 875
BstV1I GCAGC 4 cut(s) 304, 559, 718, 726
BstV2I GAAGAC 2 cut(s) 117, 359
BstX2I RGATCY 1 cut(s) 836
BstYI RGATCY 1 cut(s) 836
BsuRI GGCC 6 cut(s) 83, 326, 336, 395, 642, 801
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 2 cut(s) 570, 662
BtsCI GGATG 2 cut(s) 268, 816
BveI ACCTGC 2 cut(s) 111, 273
Cac8I GCNNGC 6 cut(s) 37, 43, 70, 81, 397, 631
CfoI GCGC 2 cut(s) 41, 691
Cfr10I RCCGGY 3 cut(s) 41, 395, 598
Cfr13I GGNCC 5 cut(s) 100, 423, 514, 640, 843
CpoI CGGWCCG 1 cut(s) 423
CseI GACGC 5 cut(s) 95, 125, 191, 618, 741
Csp6I GTAC 1 cut(s) 190
CspI CGGWCCG 1 cut(s) 423
CviAII CATG 1 cut(s) 52
CviQI GTAC 1 cut(s) 190
DpnI GATC 5 cut(s) 57, 430, 461, 505, 838
DpnII GATC 5 cut(s) 55, 428, 459, 503, 836
DrdI GACNNNNNNGTC 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 324
Eam1104I CTCTTC 1 cut(s) 668
Eam1105I GACNNNNNGTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 668
EciI GGCGGA 3 cut(s) 161, 617, 724
Eco130I CCWWGG 5 cut(s) 51, 177, 318, 477, 802
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 4 cut(s) 100, 423, 514, 843
Eco88I CYCGRG 1 cut(s) 769
EcoO109I RGGNCCY 3 cut(s) 100, 640, 843
EcoRII CCWGG 1 cut(s) 845
EcoT14I CCWWGG 5 cut(s) 51, 177, 318, 477, 802
ErhI CCWWGG 5 cut(s) 51, 177, 318, 477, 802
Esp3I CGTCTC 2 cut(s) 601, 740
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 491
FaqI GGGAC 1 cut(s) 527
FatI CATG 1 cut(s) 51
FauI CCCGC 2 cut(s) 162, 504
FokI GGATG 2 cut(s) 255, 823
FspBI CTAG 3 cut(s) 26, 626, 803
GlaI GCGC 2 cut(s) 40, 690
GsuI CTGGAG 1 cut(s) 235
HaeIII GGCC 6 cut(s) 83, 326, 336, 395, 642, 801
HgaI GACGC 5 cut(s) 95, 125, 191, 618, 741
HhaI GCGC 2 cut(s) 41, 691
Hin1I GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 2 cut(s) 39, 689
HinP1I GCGC 2 cut(s) 39, 689
HinfI GANTC 7 cut(s) 74, 161, 230, 297, 498, 695, 761
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 3 cut(s) 417, 503, 834
Hpy188III TCNNGA 4 cut(s) 301, 426, 436, 769
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 3 cut(s) 91, 220, 223
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 4 cut(s) 569, 661, 681, 870
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 8 cut(s) 45, 89, 472, 639, 697, 706, 728, 786
HpySE526I ACGT 4 cut(s) 569, 661, 681, 870
Hsp92I GRCGYC 6 cut(s) 87, 117, 183, 681, 752, 870
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 2 cut(s) 39, 689
Kpn2I TCCGGA 1 cut(s) 425
KroI GCCGGC 2 cut(s) 41, 395
KroNI GCCGGC 2 cut(s) 43, 397
Kzo9I GATC 5 cut(s) 55, 428, 459, 503, 836
LmnI GCTCC 4 cut(s) 53, 260, 711, 856
Lsp1109I GCAGC 4 cut(s) 304, 559, 718, 726
LweI GCATC 2 cut(s) 277, 873
MaeI CTAG 3 cut(s) 26, 626, 803
MaeII ACGT 4 cut(s) 569, 661, 681, 870
MaeIII GTNAC 2 cut(s) 28, 677
MalI GATC 5 cut(s) 57, 430, 461, 505, 838
MboI GATC 5 cut(s) 55, 428, 459, 503, 836
MboII GAAGA 3 cut(s) 122, 364, 685
MflI RGATCY 1 cut(s) 836
MhlI GDGCHC 2 cut(s) 782, 861
MluCI AATT 2 cut(s) 274, 286
MlyI GAGTC 6 cut(s) 83, 170, 224, 507, 689, 755
MmeI TCCRAC 1 cut(s) 812
MnlI CCTC 6 cut(s) 216, 347, 525, 699, 717, 765
MreI CGCCGGCG 1 cut(s) 41
MroI TCCGGA 1 cut(s) 425
MroNI GCCGGC 2 cut(s) 41, 395
MroXI GAANNNNTTC 2 cut(s) 212, 818
MseI TTAA 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 550
MspR9I CCNGG 6 cut(s) 134, 143, 638, 798, 841, 847
MvaI CCWGG 1 cut(s) 847
MvnI CGCG 2 cut(s) 689, 875
MwoI GCNNNNNNNGC 8 cut(s) 45, 89, 472, 639, 697, 706, 728, 786
NaeI GCCGGC 2 cut(s) 43, 397
NciI CCSGG 5 cut(s) 134, 143, 638, 798, 841
NcoI CCATGG 1 cut(s) 51
NdeII GATC 5 cut(s) 55, 428, 459, 503, 836
NgoMIV GCCGGC 2 cut(s) 41, 395
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 5 cut(s) 49, 515, 536, 641, 844
NmeAIII GCCGAG 3 cut(s) 118, 211, 729
NmuCI GTSAC 1 cut(s) 677
NspV TTCGAA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 9 cut(s) 123, 189, 198, 216, 452, 575, 655, 761, 867
PdiI GCCGGC 2 cut(s) 43, 397
PdmI GAANNNNTTC 2 cut(s) 212, 818
PfeI GAWTC 1 cut(s) 297
PflFI GACNNNGTC 1 cut(s) 751
PleI GAGTC 6 cut(s) 82, 169, 224, 506, 689, 755
PpsI GAGTC 6 cut(s) 82, 169, 224, 506, 689, 755
PpuMI RGGWCCY 2 cut(s) 100, 843
Psp5II RGGWCCY 2 cut(s) 100, 843
Psp6I CCWGG 1 cut(s) 845
PspGI CCWGG 1 cut(s) 845
PspN4I GGNNCC 5 cut(s) 49, 515, 536, 641, 844
PspPI GGNCC 5 cut(s) 100, 423, 514, 640, 843
PspPPI RGGWCCY 2 cut(s) 100, 843
PsrI GAACNNNNNNTAC 4 cut(s) 182, 200, 214, 232
PsuI RGATCY 1 cut(s) 836
PsyI GACNNNGTC 1 cut(s) 751
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Rsr2I CGGWCCG 1 cut(s) 423
RsrII CGGWCCG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 594
Sau3AI GATC 5 cut(s) 55, 428, 459, 503, 836
Sau96I GGNCC 5 cut(s) 100, 423, 514, 640, 843
SchI GAGTC 6 cut(s) 83, 170, 224, 507, 689, 755
ScrFI CCNGG 6 cut(s) 134, 143, 638, 798, 841, 847
SduI GDGCHC 2 cut(s) 782, 861
SfaNI GCATC 2 cut(s) 277, 873
SfuI TTCGAA 1 cut(s) 278
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 4 cut(s) 100, 423, 514, 843
Sse9I AATT 2 cut(s) 274, 286
SspMI CTAG 3 cut(s) 26, 626, 803
StyD4I CCNGG 6 cut(s) 132, 141, 636, 796, 839, 845
StyI CCWWGG 5 cut(s) 51, 177, 318, 477, 802
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 4 cut(s) 572, 664, 684, 873
TaqII GACCGA 1 cut(s) 421
TasI AATT 2 cut(s) 274, 286
TauI GCSGC 7 cut(s) 48, 92, 326, 349, 409, 526, 703
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 4 cut(s) 292, 547, 714, 731
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 2 cut(s) 320, 827
TspGWI ACGGA 2 cut(s) 461, 797
Tth111I GACNNNGTC 1 cut(s) 751
VpaK11BI GGWCC 4 cut(s) 100, 423, 514, 843
XmaJI CCTAGG 1 cut(s) 802
XmnI GAANNNNTTC 2 cut(s) 212, 818
XspI CTAG 3 cut(s) 26, 626, 803
ZraI GACGTC 2 cut(s) 682, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.