Rh3DG211000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0014262
Physical Location & Seq
Reverse (-)
19479503 .. 19481268
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG211000.1

Sequence Viewer

Length: 882 bp
ATGCCACAAGTCGATTTGGAAACCCTAGTTGCGGCCTGCGCCGGCGGCTCAATGGATCGGAAAATCGCCTGCGAGACGCAGGCCGACGGCGGAGACCATGACCGGCCGGAAGACGAGGCCGCCGACGCCGACGAACCGGTTGTGGCGGCGGATTTCCCGCCGGAGTCGTTCTGGCTGTCGAAGGACGCCGAGTACGACTGGTTCGACCGGAACGCCTTCTACGAGAGGAAGGACTCCACCAAAGGGAGCAACTCCAACTCCACGAACCTGCATCCGAATTCGAACAACAATTCGCAGCGGTTCTCGAAGAACTTGAAGTCCAAGGCGGCGATTATTGGCCTACCGAAGCCGCAGAAGACGAACTACGCCGATACGAAGCACCGGAGGAACTGTAAGGTCGGGAACGGGAGGTTGTTTCCGAAGCGGTCCGGATCGGTCGGGAAATCGACGGACGGGTCGATGATCGAGCCGTCGTCGCCGAAGGTTTCGTGCATGGGGAGGGTCAGATCGAAGCGCGACCGGAAGCGGCGGTGGAGGAACCGGCAGCGGTCGAGCAACGACGCGCCGTCGATGGAGAAGTCGGTTAAACAGGTCGAGAGACGGAAGTCCGGGTTTCTAGCGAGTTTTCGGGGGTTGTTTCGGCACGGCCGCCGAGGTAAGTCGAAGAGTGACAGCCACGCGCCGTTTGGTGTGGCGGAGTCGCCGCCGAGAAGGAGCAGCATGGCGAGGGGAGCGGCGTTCGACTACGAGACGGCGTCGTGCGACTCGCTGCCGAGGCAGAGCACGGAGAGCGAACCGCCCGGTCTGGGCGGGATGAAGCGGTTCGTGTCGGGTCGGAAATCCGGGTCGTGGGTCGGGGAGCACGGCATCGACGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.35

Weight (kDa)

9.8

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 454
AatII GACGTC 1 cut(s) 876
Acc36I ACCTGC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 734
AccII CGCG 4 cut(s) 516, 563, 680, 878
AccIII TCCGGA 1 cut(s) 428
AclWI GGATC 2 cut(s) 63, 439
AcoI YGGCCR 2 cut(s) 104, 646
AcsI RAATTY 1 cut(s) 277
AcyI GRCGYC 4 cut(s) 126, 186, 755, 873
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 4 cut(s) 31, 243, 806, 849
AgeI ACCGGT 1 cut(s) 136
AgsI TTSAA 1 cut(s) 316
AhdI GACNNNNNGTC 1 cut(s) 565
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
Alw21I GWGCWC 2 cut(s) 785, 864
Alw26I GTCTC 4 cut(s) 68, 87, 592, 743
AlwI GGATC 2 cut(s) 63, 439
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 6 cut(s) 33, 81, 104, 117, 337, 646
ApeKI GCWGC 4 cut(s) 295, 544, 717, 769
ApoI RAATTY 1 cut(s) 277
AsiGI ACCGGT 1 cut(s) 136
Asp700I GAANNNNTTC 2 cut(s) 215, 821
AspLEI GCGC 4 cut(s) 41, 516, 565, 682
AspS9I GGNCC 1 cut(s) 426
AsuC2I CCSGG 3 cut(s) 610, 801, 844
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 2 cut(s) 117, 362
Bbv12I GWGCWC 2 cut(s) 785, 864
BbvI GCAGC 4 cut(s) 307, 556, 729, 756
BccI CCATC 1 cut(s) 565
BceAI ACGGC 7 cut(s) 103, 454, 550, 661, 667, 768, 880
BcgI CGANNNNNNTGC 1 cut(s) 856
BcnI CCSGG 3 cut(s) 610, 801, 844
BcoDI GTCTC 4 cut(s) 68, 87, 592, 743
BfaI CTAG 2 cut(s) 26, 617
BfuAI ACCTGC 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 610, 801, 844
Bme18I GGWCC 1 cut(s) 426
BmeRI GACNNNNNGTC 1 cut(s) 565
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 539
BmrFI CCNGG 3 cut(s) 610, 801, 844
BmsI GCATC 2 cut(s) 280, 876
BoxI GACNNNNGTC 1 cut(s) 604
BpiI GAAGAC 2 cut(s) 117, 362
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 3 cut(s) 610, 801, 844
BsaHI GRCGYC 4 cut(s) 126, 186, 755, 873
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 321, 652, 773
BsaWI WCCGGW 5 cut(s) 136, 207, 381, 428, 519
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 376, 406
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 243, 806, 849
Bse118I RCCGGY 4 cut(s) 41, 102, 136, 540
Bse1I ACTGG 1 cut(s) 203
BseAI TCCGGA 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 321, 652, 773
BseGI GGATG 2 cut(s) 271, 819
BseLI CCNNNNNNNGG 4 cut(s) 31, 243, 806, 849
BseNI ACTGG 1 cut(s) 203
BseX3I CGGCCG 2 cut(s) 104, 646
BseXI GCAGC 4 cut(s) 307, 556, 729, 756
Bsh1236I CGCG 4 cut(s) 516, 563, 680, 878
Bsh1285I CGRYCG 6 cut(s) 107, 208, 438, 520, 551, 649
BshFI GGCC 6 cut(s) 35, 83, 106, 119, 339, 648
BshTI ACCGGT 1 cut(s) 136
BsiEI CGRYCG 6 cut(s) 107, 208, 438, 520, 551, 649
BsiHKAI GWGCWC 2 cut(s) 785, 864
BslI CCNNNNNNNGG 4 cut(s) 31, 243, 806, 849
BsmAI GTCTC 4 cut(s) 68, 87, 592, 743
BsmBI CGTCTC 3 cut(s) 68, 592, 743
BsnI GGCC 6 cut(s) 35, 83, 106, 119, 339, 648
Bso31I GGTCTC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 785, 864
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 4 cut(s) 55, 431, 462, 506
BspANI GGCC 6 cut(s) 35, 83, 106, 119, 339, 648
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 4 cut(s) 516, 563, 680, 878
BspLI GGNNCC 1 cut(s) 539
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 63, 439
BspT104I TTCGAA 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 734
BsrFI RCCGGY 4 cut(s) 41, 102, 136, 540
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 4 cut(s) 41, 102, 136, 540
BssECI CCNNGG 3 cut(s) 321, 652, 773
BssMI GATC 4 cut(s) 55, 431, 462, 506
BssNI GRCGYC 4 cut(s) 126, 186, 755, 873
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 659
BstACI GRCGYC 4 cut(s) 126, 186, 755, 873
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 37, 43, 70, 81
BstF5I GGATG 2 cut(s) 271, 819
BstFNI CGCG 4 cut(s) 516, 563, 680, 878
BstHHI GCGC 4 cut(s) 41, 516, 565, 682
BstKTI GATC 4 cut(s) 58, 434, 465, 509
BstMAI GTCTC 4 cut(s) 68, 87, 592, 743
BstMBI GATC 4 cut(s) 55, 431, 462, 506
BstMCI CGRYCG 6 cut(s) 107, 208, 438, 520, 551, 649
BstMWI GCNNNNNNNGC 7 cut(s) 38, 45, 125, 475, 731, 775, 789
BstPAI GACNNNNGTC 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 608, 799, 842
BstUI CGCG 4 cut(s) 516, 563, 680, 878
BstV1I GCAGC 4 cut(s) 307, 556, 729, 756
BstV2I GAAGAC 2 cut(s) 117, 362
BstZI CGGCCG 2 cut(s) 104, 646
BsuRI GGCC 6 cut(s) 35, 83, 106, 119, 339, 648
BtsCI GGATG 2 cut(s) 271, 819
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 4 cut(s) 37, 43, 70, 81
CfoI GCGC 4 cut(s) 41, 516, 565, 682
Cfr10I RCCGGY 4 cut(s) 41, 102, 136, 540
Cfr13I GGNCC 1 cut(s) 426
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 5 cut(s) 85, 134, 194, 569, 744
Csp6I GTAC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 136
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 3 cut(s) 98, 493, 721
CviQI GTAC 1 cut(s) 193
DpnI GATC 4 cut(s) 57, 433, 464, 508
DpnII GATC 4 cut(s) 55, 431, 462, 506
DrdI GACNNNNNNGTC 1 cut(s) 454
DriI GACNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 454
EaeI YGGCCR 2 cut(s) 104, 646
EagI CGGCCG 2 cut(s) 104, 646
Eam1104I CTCTTC 1 cut(s) 659
Eam1105I GACNNNNNGTC 1 cut(s) 565
EarI CTCTTC 1 cut(s) 659
EciI GGCGGA 3 cut(s) 105, 164, 710
EclXI CGGCCG 2 cut(s) 104, 646
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 426
Eco52I CGGCCG 2 cut(s) 104, 646
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 3 cut(s) 68, 592, 743
FaeI CATG 3 cut(s) 101, 496, 724
FaiI YATR 3 cut(s) 99, 494, 722
FatI CATG 3 cut(s) 97, 492, 720
FauI CCCGC 2 cut(s) 165, 803
FokI GGATG 2 cut(s) 258, 826
FspBI CTAG 2 cut(s) 26, 617
GlaI GCGC 4 cut(s) 40, 515, 564, 681
HaeIII GGCC 6 cut(s) 35, 83, 106, 119, 339, 648
HgaI GACGC 5 cut(s) 85, 134, 194, 569, 744
HhaI GCGC 4 cut(s) 41, 516, 565, 682
Hin1I GRCGYC 4 cut(s) 126, 186, 755, 873
Hin1II CATG 3 cut(s) 101, 496, 724
Hin6I GCGC 4 cut(s) 39, 514, 563, 680
HinP1I GCGC 4 cut(s) 39, 514, 563, 680
HinfI GANTC 4 cut(s) 164, 233, 698, 764
Hpy188I TCNGA 5 cut(s) 60, 276, 420, 506, 837
Hpy188III TCNNGA 5 cut(s) 304, 400, 429, 439, 595
HpyAV CCTTC 5 cut(s) 175, 223, 226, 475, 705
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 873
HpyCH4V TGCA 2 cut(s) 271, 492
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 45, 125, 475, 731, 775, 789
HpySE526I ACGT 1 cut(s) 873
Hsp92I GRCGYC 4 cut(s) 126, 186, 755, 873
Hsp92II CATG 3 cut(s) 101, 496, 724
HspAI GCGC 4 cut(s) 39, 514, 563, 680
Kpn2I TCCGGA 1 cut(s) 428
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 4 cut(s) 55, 431, 462, 506
LmnI GCTCC 4 cut(s) 246, 714, 731, 859
Lsp1109I GCAGC 4 cut(s) 307, 556, 729, 756
LweI GCATC 2 cut(s) 280, 876
MaeI CTAG 2 cut(s) 26, 617
MaeII ACGT 1 cut(s) 873
MaeIII GTNAC 1 cut(s) 668
MalI GATC 4 cut(s) 57, 433, 464, 508
MbiI CCGCTC 1 cut(s) 734
MboI GATC 4 cut(s) 55, 431, 462, 506
MboII GAAGA 4 cut(s) 122, 319, 367, 676
MhlI GDGCHC 2 cut(s) 785, 864
MluCI AATT 2 cut(s) 277, 289
MlyI GAGTC 4 cut(s) 173, 227, 707, 758
MmeI TCCRAC 2 cut(s) 279, 815
MnlI CCTC 9 cut(s) 109, 219, 378, 402, 492, 528, 647, 720, 768
MreI CGCCGGCG 1 cut(s) 41
MroI TCCGGA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 215, 821
MseI TTAA 1 cut(s) 585
MspA1I CMGCKG 2 cut(s) 298, 547
MspR9I CCNGG 3 cut(s) 610, 801, 844
MvnI CGCG 4 cut(s) 516, 563, 680, 878
MwoI GCNNNNNNNGC 7 cut(s) 38, 45, 125, 475, 731, 775, 789
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 610, 801, 844
NdeII GATC 4 cut(s) 55, 431, 462, 506
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 101, 496, 724
NlaIV GGNNCC 1 cut(s) 539
NmeAIII GCCGAG 4 cut(s) 214, 677, 732, 798
NmuCI GTSAC 1 cut(s) 668
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 6 cut(s) 120, 192, 201, 219, 455, 870
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 215, 821
PflFI GACNNNGTC 1 cut(s) 754
PinAI ACCGGT 1 cut(s) 136
PleI GAGTC 4 cut(s) 172, 227, 706, 758
PpsI GAGTC 4 cut(s) 172, 227, 706, 758
PshAI GACNNNNGTC 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 426
PsrI GAACNNNNNNTAC 4 cut(s) 185, 203, 217, 235
PsyI GACNNNGTC 1 cut(s) 754
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SaqAI TTAA 1 cut(s) 585
Sau3AI GATC 4 cut(s) 55, 431, 462, 506
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 4 cut(s) 173, 227, 707, 758
ScrFI CCNGG 3 cut(s) 610, 801, 844
SduI GDGCHC 2 cut(s) 785, 864
SetI ASST 7 cut(s) 270, 399, 413, 486, 594, 658, 876
SfaNI GCATC 2 cut(s) 280, 876
SfuI TTCGAA 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 1 cut(s) 426
Sse9I AATT 2 cut(s) 277, 289
SspMI CTAG 2 cut(s) 26, 617
StyD4I CCNGG 3 cut(s) 608, 799, 842
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 876
TaqII GACCGA 1 cut(s) 424
TasI AATT 2 cut(s) 277, 289
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 4 cut(s) 295, 544, 717, 769
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 1 cut(s) 830
TspGWI ACGGA 3 cut(s) 464, 616, 800
Tth111I GACNNNGTC 1 cut(s) 754
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XmnI GAANNNNTTC 2 cut(s) 215, 821
XspI CTAG 2 cut(s) 26, 617
ZraI GACGTC 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.