RLG00000023978

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014262
Physical Location & Seq
Forward (+)
30652852 .. 30653730
879 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023978

Sequence Viewer

Length: 879 bp
ATGCCACAAGTCGATTTGGAAACCCTAGTTACGGCCTGCGCCGGGGGCTCAGATCGGAAAATCGCCTGCGAGACGCAGGCCGACGGCGGAGACCATGACCGGCAGGAAGACGAGGCCGCCGACGCCGACGAACCGGTTGTGGCGGCGGATTTCCCGCCGGAGTCGTTCTGGCTGTCGAAGGACGCCGAGTACGACTGGTTCGACCGGAACGCCTTCTACGAGAGGAAGGACTCCACGAAAGGAAACAACTCCAACTCCACGAACCTGCATCCGAGTTCGAACAACAATTCGCAGCGGTTCTCGAAGAACTTGAAGTCCAAGGCGGCGATTATTGGCCTACCGAAGCCGCAGAAGACGAACTACGCCGATACGAAGCACCGGAGGAACTGTAAGGTCGGGAAAGGGCCGCTGTTTCCGAAGCGGTCCGGATCGGTCGGGAAAACGACCGACGGGTCGATGATCGAGCCGTCGTCGCCGAAGGTTTCGTGCATGGGGAGGGTCAGATCGAAGCGGGACCGGAAGCGGCGGTGGAGGAACCGGCAGCGGTCGAGCAACGACGCGTCGTCGATGGAGAGGTCGATTAAACCGGTCGAGAGACGGAAGTCCGGGTTTCTAGCGAGTTTTCGGGGGTTGTTTCGGCACGGCCGCCGAGGTAAGTCGAAGAGTGACAGCCACGCGCCGTTTGGTGCGGCGGAGTCGCCGCCGAGAAGGAGCAGCATGGCGAGGGGAGCGGCGTTCGACTACGAGACGGCGTCGTGCGACTCGCTCCCGAGGCAGAGCACGGAGAGCGAACCGCCGGGTCTCGGCGGGATGAAGCGGTTCGTGTCGGGTCGGAAATCCGGGTCGTGGGTCGGGGAGCACGGCATCGACGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

32.22

Weight (kDa)

9.8

Isoelectric Point (pI)

66.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 451
AatII GACGTC 1 cut(s) 873
Acc36I ACCTGC 1 cut(s) 273
AccBSI CCGCTC 1 cut(s) 731
AccII CGCG 3 cut(s) 560, 677, 875
AccIII TCCGGA 1 cut(s) 425
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 643
AcyI GRCGYC 4 cut(s) 123, 183, 752, 870
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 4 cut(s) 31, 42, 803, 846
AflIII ACRYGT 1 cut(s) 558
AgeI ACCGGT 2 cut(s) 133, 586
AgsI TTSAA 1 cut(s) 313
AhdI GACNNNNNGTC 1 cut(s) 562
AloI GAACNNNNNNTCC 2 cut(s) 299, 331
Alw21I GWGCWC 2 cut(s) 782, 861
Alw26I GTCTC 5 cut(s) 65, 84, 589, 740, 806
AlwI GGATC 1 cut(s) 436
Ama87I CYCGRG 1 cut(s) 769
Aor13HI TCCGGA 1 cut(s) 425
AoxI GGCC 6 cut(s) 33, 78, 114, 334, 404, 643
ApeKI GCWGC 3 cut(s) 292, 541, 714
AsiGI ACCGGT 2 cut(s) 133, 586
Asp700I GAANNNNTTC 2 cut(s) 212, 818
AspLEI GCGC 2 cut(s) 41, 679
AspS9I GGNCC 3 cut(s) 404, 423, 514
AsuC2I CCSGG 4 cut(s) 43, 607, 798, 841
AsuII TTCGAA 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 769
AvaII GGWCC 2 cut(s) 423, 514
BanII GRGCYC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BbsI GAAGAC 2 cut(s) 114, 359
Bbv12I GWGCWC 2 cut(s) 782, 861
BbvI GCAGC 3 cut(s) 304, 553, 726
BccI CCATC 1 cut(s) 562
BceAI ACGGC 7 cut(s) 48, 100, 451, 658, 664, 765, 877
BcgI CGANNNNNNTGC 1 cut(s) 853
BcnI CCSGG 4 cut(s) 43, 607, 798, 841
BcoDI GTCTC 5 cut(s) 65, 84, 589, 740, 806
BfaI CTAG 2 cut(s) 26, 614
BfuAI ACCTGC 1 cut(s) 273
Bme1390I CCNGG 4 cut(s) 43, 607, 798, 841
Bme18I GGWCC 2 cut(s) 423, 514
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 1 cut(s) 769
BmgT120I GGNCC 3 cut(s) 404, 423, 514
BmiI GGNNCC 2 cut(s) 515, 536
BmrFI CCNGG 4 cut(s) 43, 607, 798, 841
BmsI GCATC 2 cut(s) 277, 873
BoxI GACNNNNGTC 1 cut(s) 601
BpiI GAAGAC 2 cut(s) 114, 359
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 4 cut(s) 43, 607, 798, 841
BsaHI GRCGYC 4 cut(s) 123, 183, 752, 870
BsaI GGTCTC 2 cut(s) 84, 806
BsaJI CCNNGG 4 cut(s) 42, 318, 649, 770
BsaWI WCCGGW 6 cut(s) 133, 204, 378, 425, 516, 586
BsaXI ACNNNNNCTCC 4 cut(s) 239, 269, 373, 403
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 42, 803, 846
Bse118I RCCGGY 4 cut(s) 99, 133, 537, 586
Bse1I ACTGG 1 cut(s) 200
BseAI TCCGGA 1 cut(s) 425
BseDI CCNNGG 4 cut(s) 42, 318, 649, 770
BseGI GGATG 2 cut(s) 268, 816
BseLI CCNNNNNNNGG 4 cut(s) 31, 42, 803, 846
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 200
BseX3I CGGCCG 1 cut(s) 643
BseXI GCAGC 3 cut(s) 304, 553, 726
Bsh1236I CGCG 3 cut(s) 560, 677, 875
Bsh1285I CGRYCG 6 cut(s) 205, 435, 447, 548, 591, 646
BshFI GGCC 6 cut(s) 35, 80, 116, 336, 406, 645
BshTI ACCGGT 2 cut(s) 133, 586
BsiEI CGRYCG 6 cut(s) 205, 435, 447, 548, 591, 646
BsiHKAI GWGCWC 2 cut(s) 782, 861
BsiHKCI CYCGRG 1 cut(s) 769
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 4 cut(s) 31, 42, 803, 846
BsmAI GTCTC 5 cut(s) 65, 84, 589, 740, 806
BsmBI CGTCTC 3 cut(s) 65, 589, 740
BsmFI GGGAC 1 cut(s) 527
BsnI GGCC 6 cut(s) 35, 80, 116, 336, 406, 645
Bso31I GGTCTC 2 cut(s) 84, 806
BsoBI CYCGRG 1 cut(s) 769
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 50, 782, 861
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 4 cut(s) 52, 428, 459, 503
BspANI GGCC 6 cut(s) 35, 80, 116, 336, 406, 645
BspCNI CTCAG 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 425
BspFNI CGCG 3 cut(s) 560, 677, 875
BspLI GGNNCC 2 cut(s) 515, 536
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 436
BspT104I TTCGAA 1 cut(s) 278
BspTNI GGTCTC 2 cut(s) 84, 806
BsrBI CCGCTC 1 cut(s) 731
BsrFI RCCGGY 4 cut(s) 99, 133, 537, 586
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 4 cut(s) 99, 133, 537, 586
BssECI CCNNGG 4 cut(s) 42, 318, 649, 770
BssMI GATC 4 cut(s) 52, 428, 459, 503
BssNI GRCGYC 4 cut(s) 123, 183, 752, 870
BssT1I CCWWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 656
BstACI GRCGYC 4 cut(s) 123, 183, 752, 870
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 3 cut(s) 37, 67, 78
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 2 cut(s) 268, 816
BstFNI CGCG 3 cut(s) 560, 677, 875
BstHHI GCGC 2 cut(s) 41, 679
BstKTI GATC 4 cut(s) 55, 431, 462, 506
BstMAI GTCTC 5 cut(s) 65, 84, 589, 740, 806
BstMBI GATC 4 cut(s) 52, 428, 459, 503
BstMCI CGRYCG 6 cut(s) 205, 435, 447, 548, 591, 646
BstMWI GCNNNNNNNGC 6 cut(s) 45, 122, 472, 728, 772, 786
BstPAI GACNNNNGTC 1 cut(s) 601
BstSCI CCNGG 4 cut(s) 41, 605, 796, 839
BstUI CGCG 3 cut(s) 560, 677, 875
BstV1I GCAGC 3 cut(s) 304, 553, 726
BstV2I GAAGAC 2 cut(s) 114, 359
BstZI CGGCCG 1 cut(s) 643
BsuRI GGCC 6 cut(s) 35, 80, 116, 336, 406, 645
BtsCI GGATG 2 cut(s) 268, 816
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 37, 67, 78
CfoI GCGC 2 cut(s) 41, 679
Cfr10I RCCGGY 4 cut(s) 99, 133, 537, 586
Cfr13I GGNCC 3 cut(s) 404, 423, 514
CpoI CGGWCCG 1 cut(s) 423
CseI GACGC 6 cut(s) 82, 131, 191, 549, 566, 741
Csp6I GTAC 1 cut(s) 190
CspAI ACCGGT 2 cut(s) 133, 586
CspI CGGWCCG 1 cut(s) 423
CviAII CATG 3 cut(s) 95, 490, 718
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 49
DpnI GATC 4 cut(s) 54, 430, 461, 505
DpnII GATC 4 cut(s) 52, 428, 459, 503
DrdI GACNNNNNNGTC 1 cut(s) 451
DriI GACNNNNNGTC 1 cut(s) 562
DseDI GACNNNNNNGTC 1 cut(s) 451
EaeI YGGCCR 1 cut(s) 643
EagI CGGCCG 1 cut(s) 643
Eam1104I CTCTTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 1 cut(s) 562
EarI CTCTTC 1 cut(s) 656
EciI GGCGGA 3 cut(s) 102, 161, 707
EclXI CGGCCG 1 cut(s) 643
Eco130I CCWWGG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 50
Eco31I GGTCTC 2 cut(s) 84, 806
Eco47I GGWCC 2 cut(s) 423, 514
Eco52I CGGCCG 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 769
EcoT14I CCWWGG 1 cut(s) 318
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 318
Esp3I CGTCTC 3 cut(s) 65, 589, 740
FaeI CATG 3 cut(s) 98, 493, 721
FaiI YATR 3 cut(s) 96, 491, 719
FaqI GGGAC 1 cut(s) 527
FatI CATG 3 cut(s) 94, 489, 717
FauI CCCGC 3 cut(s) 162, 504, 800
FokI GGATG 2 cut(s) 255, 823
FriOI GRGCYC 1 cut(s) 50
FspBI CTAG 2 cut(s) 26, 614
GlaI GCGC 2 cut(s) 40, 678
HaeIII GGCC 6 cut(s) 35, 80, 116, 336, 406, 645
HgaI GACGC 6 cut(s) 82, 131, 191, 549, 566, 741
HhaI GCGC 2 cut(s) 41, 679
Hin1I GRCGYC 4 cut(s) 123, 183, 752, 870
Hin1II CATG 3 cut(s) 98, 493, 721
Hin6I GCGC 2 cut(s) 39, 677
HinP1I GCGC 2 cut(s) 39, 677
HinfI GANTC 4 cut(s) 161, 230, 695, 761
Hpy188I TCNGA 6 cut(s) 52, 57, 273, 417, 503, 834
Hpy188III TCNNGA 6 cut(s) 301, 397, 426, 436, 592, 769
HpyAV CCTTC 5 cut(s) 172, 220, 223, 472, 702
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 870
HpyCH4V TGCA 2 cut(s) 268, 489
HpyF10VI GCNNNNNNNGC 6 cut(s) 45, 122, 472, 728, 772, 786
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 870
Hsp92I GRCGYC 4 cut(s) 123, 183, 752, 870
Hsp92II CATG 3 cut(s) 98, 493, 721
HspAI GCGC 2 cut(s) 39, 677
Kpn2I TCCGGA 1 cut(s) 425
Kzo9I GATC 4 cut(s) 52, 428, 459, 503
LmnI GCTCC 4 cut(s) 711, 728, 771, 856
Lsp1109I GCAGC 3 cut(s) 304, 553, 726
LweI GCATC 2 cut(s) 277, 873
MaeI CTAG 2 cut(s) 26, 614
MaeII ACGT 1 cut(s) 870
MaeIII GTNAC 2 cut(s) 28, 665
MalI GATC 4 cut(s) 54, 430, 461, 505
MbiI CCGCTC 1 cut(s) 731
MboI GATC 4 cut(s) 52, 428, 459, 503
MboII GAAGA 4 cut(s) 119, 316, 364, 673
MhlI GDGCHC 3 cut(s) 50, 782, 861
MluCI AATT 1 cut(s) 286
MluI ACGCGT 1 cut(s) 558
MlyI GAGTC 4 cut(s) 170, 224, 704, 755
MmeI TCCRAC 2 cut(s) 276, 812
MnlI CCTC 9 cut(s) 106, 216, 375, 489, 525, 567, 644, 717, 765
MroI TCCGGA 1 cut(s) 425
MroXI GAANNNNTTC 2 cut(s) 212, 818
MseI TTAA 1 cut(s) 582
MspA1I CMGCKG 3 cut(s) 295, 409, 544
MspR9I CCNGG 4 cut(s) 43, 607, 798, 841
MvnI CGCG 3 cut(s) 560, 677, 875
MwoI GCNNNNNNNGC 6 cut(s) 45, 122, 472, 728, 772, 786
NciI CCSGG 4 cut(s) 43, 607, 798, 841
NdeII GATC 4 cut(s) 52, 428, 459, 503
NlaIII CATG 3 cut(s) 98, 493, 721
NlaIV GGNNCC 2 cut(s) 515, 536
NmeAIII GCCGAG 4 cut(s) 211, 674, 729, 783
NmuCI GTSAC 1 cut(s) 665
NspV TTCGAA 1 cut(s) 278
PcsI WCGNNNNNNNCGW 5 cut(s) 117, 189, 198, 216, 867
PdmI GAANNNNTTC 2 cut(s) 212, 818
PflFI GACNNNGTC 1 cut(s) 751
PinAI ACCGGT 2 cut(s) 133, 586
PleI GAGTC 4 cut(s) 169, 224, 703, 755
PpsI GAGTC 4 cut(s) 169, 224, 703, 755
PshAI GACNNNNGTC 1 cut(s) 601
PspN4I GGNNCC 2 cut(s) 515, 536
PspPI GGNCC 3 cut(s) 404, 423, 514
PsrI GAACNNNNNNTAC 4 cut(s) 182, 200, 214, 232
PsyI GACNNNGTC 1 cut(s) 751
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Rsr2I CGGWCCG 1 cut(s) 423
RsrII CGGWCCG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 582
Sau3AI GATC 4 cut(s) 52, 428, 459, 503
Sau96I GGNCC 3 cut(s) 404, 423, 514
SchI GAGTC 4 cut(s) 170, 224, 704, 755
ScrFI CCNGG 4 cut(s) 43, 607, 798, 841
SduI GDGCHC 3 cut(s) 50, 782, 861
SetI ASST 6 cut(s) 267, 396, 483, 578, 655, 873
SfaNI GCATC 2 cut(s) 277, 873
SfuI TTCGAA 1 cut(s) 278
SinI GGWCC 2 cut(s) 423, 514
Sse9I AATT 1 cut(s) 286
SspMI CTAG 2 cut(s) 26, 614
StyD4I CCNGG 4 cut(s) 41, 605, 796, 839
StyI CCWWGG 1 cut(s) 318
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 873
TaqII GACCGA 2 cut(s) 421, 461
TasI AATT 1 cut(s) 286
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 3 cut(s) 292, 541, 714
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 1 cut(s) 827
TspGWI ACGGA 2 cut(s) 613, 797
Tth111I GACNNNGTC 1 cut(s) 751
VpaK11BI GGWCC 2 cut(s) 423, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmnI GAANNNNTTC 2 cut(s) 212, 818
XspI CTAG 2 cut(s) 26, 614
ZraI GACGTC 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.