Rw3G017060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014262
Physical Location & Seq
Reverse (-)
18396568 .. 18397448
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017060.1

Sequence Viewer

Length: 849 bp
ATGCCACAAGTCGATTTGGAAACCCTAGTTGCGGCCTGCGCCGGCGGCTCAATGGATCGGAAAATCGCCTGCGAGACGCAGGCCGACGGCGGAGACCATGACCGGCCGGAAGACGAGGCCGCCGACGCCGACGAACCGGTTGTGGCGGTGGATTTCCCGCCGGAGTCGTTCTGGCTGTCGAAGGACGCCGAGTACGACTGGTTCGACCGGAACGCCTTCTACGAGAGGAAGGACTCCACCAAAGGGAGCAACTCCAACTCCACGAACCTGCATCCGAATTCGAACAACAATTCGCAGCGGTTCTCGAAGAACTTGAAGTCCAAGGCGGCGATTATTGGCCTACCGAAGCCGCAGAAGACGAACTACGCCGATACGAAGCACCGGAGGAACTGTAAGGTCGGGAACGGGAGGCTGTTTCCGAAGCGGTCCGGATCGCCGTCGTCGCCGAAGGTTTCGTGCATGGGGAGGGTCAGATCGAAGCGCGACCGGAAGCGGCGGTGGAGGAACCGGCAGCGGTCGAGCAACGACGCGCCGTCGATGGAGAAGTCGGTTAAACCGGTCGAGAGACGGAAGTCCGGGTTTCTAGCAAGCTTTCGGGGGTTGTTTCGGCACGGCCGCCGAGGTAAGTCGAAGAGTGACAGCCACGCGCCGTTTGTTGTGGCGGAGTCGCCGCCGAGAAGGAGCAGCATGGCGAGGAGAGCGGCGTTCGACTACGAGACGGCGTCGTGCGACTCGCTGCCGAGGGAGAGCACGGAGAGCGAACCGCCCGGTCTGGGCGGGATGAAGCGGTTCGTGTCGGGTCGGAAATCCGGGTCGTGGGTCGGGGAGCACGGCATCGACGTCGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.38

Weight (kDa)

9.89

Isoelectric Point (pI)

67.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36220 AT3G52710
fragaria_vesca FvH4_6g18850
malus_domestica MD12G1024700.v1.1 MD14G1023600.v1.1
prunus_persica Prupe.7G109200_v2.0.a1
pyrus_communis pycom12g02440 pycom14g02250
rosa_laevigata RLG00000023978
rosa_multiflora Rmu_sc0005561.1_g000001
rosa_roxburghii Rroxscaffold_6G00407720
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186500 Rh3BG215100 Rh3CG211800 Rh3DG211000
rosa_wichuraiana Rw3G017060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 843
Acc36I ACCTGC 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 701
AccII CGCG 4 cut(s) 483, 530, 647, 845
AccIII TCCGGA 1 cut(s) 428
AclWI GGATC 2 cut(s) 63, 439
AcoI YGGCCR 2 cut(s) 104, 613
AcsI RAATTY 1 cut(s) 277
AcyI GRCGYC 4 cut(s) 126, 186, 722, 840
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 4 cut(s) 31, 243, 773, 816
AgeI ACCGGT 2 cut(s) 136, 556
AgsI TTSAA 1 cut(s) 316
AhdI GACNNNNNGTC 1 cut(s) 532
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
Alw21I GWGCWC 2 cut(s) 752, 831
Alw26I GTCTC 4 cut(s) 68, 87, 559, 710
AlwI GGATC 2 cut(s) 63, 439
Aor13HI TCCGGA 1 cut(s) 428
AoxI GGCC 6 cut(s) 33, 81, 104, 117, 337, 613
ApeKI GCWGC 4 cut(s) 295, 511, 684, 736
ApoI RAATTY 1 cut(s) 277
AsiGI ACCGGT 2 cut(s) 136, 556
Asp700I GAANNNNTTC 2 cut(s) 215, 788
AspLEI GCGC 4 cut(s) 41, 483, 532, 649
AspS9I GGNCC 1 cut(s) 426
AsuC2I CCSGG 3 cut(s) 577, 768, 811
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 426
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 2 cut(s) 117, 362
Bbv12I GWGCWC 2 cut(s) 752, 831
BbvI GCAGC 4 cut(s) 307, 523, 696, 723
BccI CCATC 1 cut(s) 532
BceAI ACGGC 7 cut(s) 103, 421, 517, 628, 634, 735, 847
BcgI CGANNNNNNTGC 1 cut(s) 823
BcnI CCSGG 3 cut(s) 577, 768, 811
BcoDI GTCTC 4 cut(s) 68, 87, 559, 710
BfaI CTAG 2 cut(s) 26, 584
BfuAI ACCTGC 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 577, 768, 811
Bme18I GGWCC 1 cut(s) 426
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 506
BmrFI CCNGG 3 cut(s) 577, 768, 811
BmsI GCATC 2 cut(s) 280, 843
BoxI GACNNNNGTC 1 cut(s) 571
BpiI GAAGAC 2 cut(s) 117, 362
Bpu14I TTCGAA 1 cut(s) 281
BpuMI CCSGG 3 cut(s) 577, 768, 811
BsaHI GRCGYC 4 cut(s) 126, 186, 722, 840
BsaI GGTCTC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 321, 619, 740
BsaWI WCCGGW 6 cut(s) 136, 207, 381, 428, 486, 556
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 376, 406
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 243, 773, 816
Bse118I RCCGGY 5 cut(s) 41, 102, 136, 507, 556
Bse1I ACTGG 1 cut(s) 203
BseAI TCCGGA 1 cut(s) 428
BseDI CCNNGG 3 cut(s) 321, 619, 740
BseGI GGATG 2 cut(s) 271, 786
BseLI CCNNNNNNNGG 4 cut(s) 31, 243, 773, 816
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 709
BseX3I CGGCCG 2 cut(s) 104, 613
BseXI GCAGC 4 cut(s) 307, 523, 696, 723
Bsh1236I CGCG 4 cut(s) 483, 530, 647, 845
Bsh1285I CGRYCG 6 cut(s) 107, 208, 487, 518, 561, 616
BshFI GGCC 6 cut(s) 35, 83, 106, 119, 339, 615
BshTI ACCGGT 2 cut(s) 136, 556
BsiEI CGRYCG 6 cut(s) 107, 208, 487, 518, 561, 616
BsiHKAI GWGCWC 2 cut(s) 752, 831
BslI CCNNNNNNNGG 4 cut(s) 31, 243, 773, 816
BsmAI GTCTC 4 cut(s) 68, 87, 559, 710
BsmBI CGTCTC 3 cut(s) 68, 559, 710
BsnI GGCC 6 cut(s) 35, 83, 106, 119, 339, 615
Bso31I GGTCTC 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 2 cut(s) 752, 831
Bsp13I TCCGGA 1 cut(s) 428
Bsp143I GATC 3 cut(s) 55, 431, 473
BspANI GGCC 6 cut(s) 35, 83, 106, 119, 339, 615
BspEI TCCGGA 1 cut(s) 428
BspFNI CGCG 4 cut(s) 483, 530, 647, 845
BspLI GGNNCC 1 cut(s) 506
BspMI ACCTGC 1 cut(s) 276
BspPI GGATC 2 cut(s) 63, 439
BspT104I TTCGAA 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 701
BsrFI RCCGGY 5 cut(s) 41, 102, 136, 507, 556
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 5 cut(s) 41, 102, 136, 507, 556
BssECI CCNNGG 3 cut(s) 321, 619, 740
BssMI GATC 3 cut(s) 55, 431, 473
BssNI GRCGYC 4 cut(s) 126, 186, 722, 840
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 626
BstACI GRCGYC 4 cut(s) 126, 186, 722, 840
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 37, 43, 70, 81, 589
BstF5I GGATG 2 cut(s) 271, 786
BstFNI CGCG 4 cut(s) 483, 530, 647, 845
BstHHI GCGC 4 cut(s) 41, 483, 532, 649
BstKTI GATC 3 cut(s) 58, 434, 476
BstMAI GTCTC 4 cut(s) 68, 87, 559, 710
BstMBI GATC 3 cut(s) 55, 431, 473
BstMCI CGRYCG 6 cut(s) 107, 208, 487, 518, 561, 616
BstMWI GCNNNNNNNGC 6 cut(s) 38, 45, 125, 442, 698, 756
BstPAI GACNNNNGTC 1 cut(s) 571
BstSCI CCNGG 3 cut(s) 575, 766, 809
BstUI CGCG 4 cut(s) 483, 530, 647, 845
BstV1I GCAGC 4 cut(s) 307, 523, 696, 723
BstV2I GAAGAC 2 cut(s) 117, 362
BstZI CGGCCG 2 cut(s) 104, 613
BsuRI GGCC 6 cut(s) 35, 83, 106, 119, 339, 615
BtsCI GGATG 2 cut(s) 271, 786
BveI ACCTGC 1 cut(s) 276
Cac8I GCNNGC 5 cut(s) 37, 43, 70, 81, 589
CfoI GCGC 4 cut(s) 41, 483, 532, 649
Cfr10I RCCGGY 5 cut(s) 41, 102, 136, 507, 556
Cfr13I GGNCC 1 cut(s) 426
CpoI CGGWCCG 1 cut(s) 426
CseI GACGC 5 cut(s) 85, 134, 194, 536, 711
Csp6I GTAC 1 cut(s) 193
CspAI ACCGGT 2 cut(s) 136, 556
CspI CGGWCCG 1 cut(s) 426
CviAII CATG 3 cut(s) 98, 460, 688
CviQI GTAC 1 cut(s) 193
DpnI GATC 3 cut(s) 57, 433, 475
DpnII GATC 3 cut(s) 55, 431, 473
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 2 cut(s) 104, 613
EagI CGGCCG 2 cut(s) 104, 613
Eam1104I CTCTTC 1 cut(s) 626
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 626
EciI GGCGGA 2 cut(s) 105, 677
EclXI CGGCCG 2 cut(s) 104, 613
Eco130I CCWWGG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 426
Eco52I CGGCCG 2 cut(s) 104, 613
EcoRI GAATTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
Esp3I CGTCTC 3 cut(s) 68, 559, 710
FaeI CATG 3 cut(s) 101, 463, 691
FaiI YATR 3 cut(s) 99, 461, 689
FatI CATG 3 cut(s) 97, 459, 687
FauI CCCGC 2 cut(s) 165, 770
FokI GGATG 2 cut(s) 258, 793
FspBI CTAG 2 cut(s) 26, 584
GlaI GCGC 4 cut(s) 40, 482, 531, 648
HaeIII GGCC 6 cut(s) 35, 83, 106, 119, 339, 615
HgaI GACGC 5 cut(s) 85, 134, 194, 536, 711
HhaI GCGC 4 cut(s) 41, 483, 532, 649
Hin1I GRCGYC 4 cut(s) 126, 186, 722, 840
Hin1II CATG 3 cut(s) 101, 463, 691
Hin6I GCGC 4 cut(s) 39, 481, 530, 647
HinP1I GCGC 4 cut(s) 39, 481, 530, 647
HindIII AAGCTT 1 cut(s) 589
HinfI GANTC 4 cut(s) 164, 233, 665, 731
Hpy188I TCNGA 5 cut(s) 60, 276, 420, 473, 804
Hpy188III TCNNGA 4 cut(s) 304, 400, 429, 562
HpyAV CCTTC 5 cut(s) 175, 223, 226, 442, 672
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 840
HpyCH4V TGCA 2 cut(s) 271, 459
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 45, 125, 442, 698, 756
HpySE526I ACGT 1 cut(s) 840
Hsp92I GRCGYC 4 cut(s) 126, 186, 722, 840
Hsp92II CATG 3 cut(s) 101, 463, 691
HspAI GCGC 4 cut(s) 39, 481, 530, 647
Kpn2I TCCGGA 1 cut(s) 428
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 55, 431, 473
LmnI GCTCC 3 cut(s) 246, 681, 826
Lsp1109I GCAGC 4 cut(s) 307, 523, 696, 723
LweI GCATC 2 cut(s) 280, 843
MaeI CTAG 2 cut(s) 26, 584
MaeII ACGT 1 cut(s) 840
MaeIII GTNAC 1 cut(s) 635
MalI GATC 3 cut(s) 57, 433, 475
MbiI CCGCTC 1 cut(s) 701
MboI GATC 3 cut(s) 55, 431, 473
MboII GAAGA 4 cut(s) 122, 319, 367, 643
MhlI GDGCHC 2 cut(s) 752, 831
MluCI AATT 2 cut(s) 277, 289
MlyI GAGTC 4 cut(s) 173, 227, 674, 725
MmeI TCCRAC 2 cut(s) 279, 782
MnlI CCTC 9 cut(s) 109, 219, 378, 402, 459, 495, 614, 687, 735
MreI CGCCGGCG 1 cut(s) 41
MroI TCCGGA 1 cut(s) 428
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 2 cut(s) 215, 788
MseI TTAA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 298, 514
MspR9I CCNGG 3 cut(s) 577, 768, 811
MvnI CGCG 4 cut(s) 483, 530, 647, 845
MwoI GCNNNNNNNGC 6 cut(s) 38, 45, 125, 442, 698, 756
NaeI GCCGGC 1 cut(s) 43
NciI CCSGG 3 cut(s) 577, 768, 811
NdeII GATC 3 cut(s) 55, 431, 473
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 3 cut(s) 101, 463, 691
NlaIV GGNNCC 1 cut(s) 506
NmeAIII GCCGAG 4 cut(s) 214, 644, 699, 765
NmuCI GTSAC 1 cut(s) 635
NspV TTCGAA 1 cut(s) 281
PcsI WCGNNNNNNNCGW 5 cut(s) 120, 192, 201, 219, 837
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 2 cut(s) 215, 788
PflFI GACNNNGTC 1 cut(s) 721
PinAI ACCGGT 2 cut(s) 136, 556
PleI GAGTC 4 cut(s) 172, 227, 673, 725
PpsI GAGTC 4 cut(s) 172, 227, 673, 725
PshAI GACNNNNGTC 1 cut(s) 571
PspN4I GGNNCC 1 cut(s) 506
PspPI GGNCC 1 cut(s) 426
PsrI GAACNNNNNNTAC 4 cut(s) 185, 203, 217, 235
PsyI GACNNNGTC 1 cut(s) 721
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
Rsr2I CGGWCCG 1 cut(s) 426
RsrII CGGWCCG 1 cut(s) 426
SaqAI TTAA 1 cut(s) 552
Sau3AI GATC 3 cut(s) 55, 431, 473
Sau96I GGNCC 1 cut(s) 426
SchI GAGTC 4 cut(s) 173, 227, 674, 725
ScrFI CCNGG 3 cut(s) 577, 768, 811
SduI GDGCHC 2 cut(s) 752, 831
SetI ASST 6 cut(s) 270, 399, 453, 593, 625, 843
SfaNI GCATC 2 cut(s) 280, 843
SfuI TTCGAA 1 cut(s) 281
SgrAI CRCCGGYG 1 cut(s) 41
SinI GGWCC 1 cut(s) 426
Sse9I AATT 2 cut(s) 277, 289
SspMI CTAG 2 cut(s) 26, 584
StyD4I CCNGG 3 cut(s) 575, 766, 809
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 843
TasI AATT 2 cut(s) 277, 289
TauI GCSGC 9 cut(s) 35, 48, 122, 329, 352, 496, 618, 673, 704
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 4 cut(s) 295, 511, 684, 736
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 797
TspGWI ACGGA 2 cut(s) 583, 767
Tth111I GACNNNGTC 1 cut(s) 721
VpaK11BI GGWCC 1 cut(s) 426
XapI RAATTY 1 cut(s) 277
XmnI GAANNNNTTC 2 cut(s) 215, 788
XspI CTAG 2 cut(s) 26, 584
ZraI GACGTC 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.