Rw3G017070

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015184
Physical Location & Seq
Forward (+)
18423783 .. 18425378
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017070.1

Sequence Viewer

Length: 1230 bp
ATGCCCAAACCCCTTCATCCTCTTCCTCAATCCACTCACATACACAGAAGACCAACAAACCCCACTTCAATGGGCTGCGTATCTTCCAAACTGTTCAAGAACGATTTCAAAGAAGAGGTCACCATCACCCACGGCGCCCAGTGCCTCAACCACGTCGTCTCCCTCACTTCCAGCACTTACGGCCTTCTAAATCTCGACAATGACCCACCGGTTGTTTCCGAGACTCATAACTTTAAGAAATGCTCTCCGAAAAAGGAAGATCCGGAGGTTATCAATGCTTGGGAACTGATGGAGGGGCTGGAGGAAGCGGTGCCGGTCAAGAGGAGTCCCAAGTCGCGCTCTGTTCTTCGGGGGTTTGCGGATTTCGATGCGAGGAGTCCGTTGAAGTTGCTGAACCAGTTCGGGTCGCCGATGAAGGGGAAGCGATTTGGGGGGAAGGAGAATAAGGGGAGAGTGAATGGGTTGGGGTATAGTCCCAAAGGGGTGCCGAAATCGAATATTGGGTCGGAGAATTCTTGCAAGAAGGCGCTGAATTTGAGTCCGGCGGTTAAAGGGTCTCCGGTTTCTGCGAAAAGGAGGAGTTTTGGGAGCGATTCGTCGAGGAGGAGGAGTTTTAGTCCCCTGTTTGATCCAGAGCTGGTTGCTTCTTATGAGAAGGAAATGTCAGAAGAGGAAGTGCAGATCAAGAGGATGGTGCTGCCTTCGCCAAAAACCAGGAAAGTGAGGTATTCTAACCAAGATTCGGAATCTGTGCTGAAGTTGTTTGAGAAGAAATGCCCTCCTGGCGGCGAAAATGCGGTTGTTATTTACACTACTACATTGAGGGGGATTAGGAAGACTTTTGAGGATTGCAACAATGTGAGGTCAATCGTGGAGTCTCACCTCGTTCGCGTGCTCGAGAGAGATATATCGATGGATTCGGGGTTTAAGGAGGAGATAAGGGGGCTAATGGGCACTAAAGAGGTTAGGGTTCCGCTTGTGTTTGTGAAGGGGAGGTTGATTGGTGGAGCTGATGAGATTGTGAAGTTGGAGGAGGAAGGAAAGCTCGGGGTTTTGTTCGATGGGATTCCGAAAGCACTTGTTGGGTGCCAAGGCTGTGCTGGAATGAGATTTGTGATGTGTGTGGAGTGCAATGGAAGCTGCAAGGTCTTGGATGAGGGGCAAAGGAAGATGGTCAAATGCGGTGAGTGCAATGAGAATGGTTTGATTCATTGCCCACTTTGTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

409

Amino Acids

45.17

Weight (kDa)

9.11

Isoelectric Point (pI)

58.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 267 - 334 2.6e-09 Glutaredoxin
GRXCR1-2_C PF23733 363 - 409 9.8e-17 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015184)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03870
fragaria_vesca FvH4_6g18880
malus_domestica MD12G1024900.v1.1 MD14G1023700.v1.1
prunus_persica Prupe.7G109100_v2.0.a1
pyrus_communis pycom14g02270
rosa_chinensis RchiOBHm_Chr3g0473861
rosa_laevigata RLG00000023977
rosa_multiflora Rmu_sc0002414.1_g000046
rosa_roxburghii Rroxscaffold_6G00407710
rosa_rugosa Rorug03G0136100
rosa_samantha Rh3AG186600 Rh3BG215200 Rh3CG211900 Rh3DG211100
rosa_wichuraiana Rw3G017070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 134, 310, 484, 1086
AccII CGCG 2 cut(s) 337, 891
AccIII TCCGGA 1 cut(s) 262
AciI CCGC 7 cut(s) 308, 359, 545, 786, 797, 974, 1182
AclWI GGATC 2 cut(s) 254, 623
AcsI RAATTY 2 cut(s) 511, 532
AcuI CTGAAG 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 135
AfiI CCNNNNNNNGG 3 cut(s) 416, 742, 785
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 4 cut(s) 69, 97, 109, 385
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 2 cut(s) 713, 781
AluBI AGCT 4 cut(s) 637, 1010, 1045, 1140
AluI AGCT 4 cut(s) 637, 1010, 1045, 1140
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 4 cut(s) 163, 215, 561, 882
AlwI GGATC 2 cut(s) 254, 623
Ama87I CYCGRG 2 cut(s) 896, 1046
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 75, 697, 1140
ApoI RAATTY 2 cut(s) 511, 532
ArsI GACNNNNNNTTYG 4 cut(s) 102, 134, 488, 520
AsiGI ACCGGT 1 cut(s) 208
Asp700I GAANNNNTTC 2 cut(s) 104, 398
AspLEI GCGC 3 cut(s) 137, 339, 529
AsuHPI GGTGA 4 cut(s) 112, 118, 872, 1196
AvaI CYCGRG 2 cut(s) 896, 1046
BaeGI GKGCMC 1 cut(s) 956
BanI GGYRCC 4 cut(s) 134, 310, 484, 1086
BbsI GAAGAC 2 cut(s) 55, 842
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 3 cut(s) 62, 684, 1127
BccI CCATC 6 cut(s) 131, 283, 685, 907, 1055, 1165
BceAI ACGGC 2 cut(s) 148, 196
BciT130I CCWGG 2 cut(s) 715, 783
BcoDI GTCTC 4 cut(s) 163, 215, 561, 882
BfoI RGCGCY 2 cut(s) 138, 530
BglI GCCNNNNNGGC 1 cut(s) 783
BisI GCNGC 4 cut(s) 76, 698, 787, 1141
BlsI GCNGC 4 cut(s) 77, 699, 788, 1142
Bme1390I CCNGG 2 cut(s) 715, 783
BmeT110I CYCGRG 2 cut(s) 896, 1046
BmgBI CACGTC 1 cut(s) 154
BmiI GGNNCC 5 cut(s) 136, 312, 486, 972, 1088
BmrFI CCNGG 2 cut(s) 715, 783
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 55, 842
BpmI CTGGAG 1 cut(s) 320
Bsa29I ATCGAT 1 cut(s) 911
BsaHI GRCGYC 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 130, 1090
BsaWI WCCGGW 3 cut(s) 208, 262, 559
BsaXI ACNNNNNCTCC 6 cut(s) 143, 173, 595, 601, 625, 631
Bsc4I CCNNNNNNNGG 3 cut(s) 416, 742, 785
Bse118I RCCGGY 2 cut(s) 208, 313
Bse1I ACTGG 2 cut(s) 139, 397
Bse3DI GCAATG 3 cut(s) 1138, 1198, 1210
BseAI TCCGGA 1 cut(s) 262
BseBI CCWGG 2 cut(s) 715, 783
BseCI ATCGAT 1 cut(s) 911
BseDI CCNNGG 2 cut(s) 130, 1090
BseGI GGATG 3 cut(s) 16, 696, 1159
BseLI CCNNNNNNNGG 3 cut(s) 416, 742, 785
BseMI GCAATG 3 cut(s) 1138, 1198, 1210
BseNI ACTGG 2 cut(s) 139, 397
BseRI GAGGAG 8 cut(s) 337, 388, 592, 616, 619, 622, 947, 1046
BseSI GKGCMC 1 cut(s) 956
BseXI GCAGC 3 cut(s) 62, 684, 1127
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 337, 891
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 4 cut(s) 134, 310, 484, 1086
BshTI ACCGGT 1 cut(s) 208
BshVI ATCGAT 1 cut(s) 911
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 2 cut(s) 896, 1046
BsiSI CCGG 5 cut(s) 209, 263, 314, 542, 560
BslFI GGGAC 3 cut(s) 312, 459, 603
BslI CCNNNNNNNGG 3 cut(s) 416, 742, 785
BsmAI GTCTC 4 cut(s) 163, 215, 561, 882
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 3 cut(s) 312, 459, 603
BsnI GGCC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 561
BsoBI CYCGRG 2 cut(s) 896, 1046
Bsp1286I GDGCHC 2 cut(s) 897, 956
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 3 cut(s) 259, 628, 681
BspACI CCGC 7 cut(s) 308, 359, 545, 786, 797, 974, 1182
BspANI GGCC 1 cut(s) 183
BspDI ATCGAT 1 cut(s) 911
BspEI TCCGGA 1 cut(s) 262
BspFNI CGCG 2 cut(s) 337, 891
BspLI GGNNCC 5 cut(s) 136, 312, 486, 972, 1088
BspPI GGATC 2 cut(s) 254, 623
BspT107I GGYRCC 4 cut(s) 134, 310, 484, 1086
BspTNI GGTCTC 1 cut(s) 561
BsrDI GCAATG 3 cut(s) 1138, 1198, 1210
BsrFI RCCGGY 2 cut(s) 208, 313
BsrI ACTGG 2 cut(s) 139, 397
BssAI RCCGGY 2 cut(s) 208, 313
BssECI CCNNGG 2 cut(s) 130, 1090
BssMI GATC 3 cut(s) 259, 628, 681
BssNI GRCGYC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 1090
Bst2UI CCWGG 2 cut(s) 715, 783
Bst4CI ACNGT 1 cut(s) 93
Bst6I CTCTTC 3 cut(s) 27, 108, 663
BstACI GRCGYC 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 893
BstDSI CCRYGG 1 cut(s) 130
BstEII GGTNACC 1 cut(s) 118
BstF5I GGATG 3 cut(s) 16, 696, 1159
BstFNI CGCG 2 cut(s) 337, 891
BstH2I RGCGCY 2 cut(s) 138, 530
BstHHI GCGC 3 cut(s) 137, 339, 529
BstKTI GATC 3 cut(s) 262, 631, 684
BstMAI GTCTC 4 cut(s) 163, 215, 561, 882
BstMBI GATC 3 cut(s) 259, 628, 681
BstMWI GCNNNNNNNGC 6 cut(s) 141, 180, 703, 783, 1137, 1188
BstNI CCWGG 2 cut(s) 715, 783
BstPI GGTNACC 1 cut(s) 118
BstSCI CCNGG 2 cut(s) 713, 781
BstSLI GKGCMC 1 cut(s) 956
BstUI CGCG 2 cut(s) 337, 891
BstV1I GCAGC 3 cut(s) 62, 684, 1127
BstV2I GAAGAC 2 cut(s) 55, 842
BstX2I RGATCY 1 cut(s) 259
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 259
Bsu15I ATCGAT 1 cut(s) 911
BsuRI GGCC 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 911
BtgI CCRYGG 1 cut(s) 130
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 16, 696, 1159
BtsIMutI CAGTG 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 893
CfoI GCGC 3 cut(s) 137, 339, 529
Cfr10I RCCGGY 2 cut(s) 208, 313
ClaI ATCGAT 1 cut(s) 911
CspAI ACCGGT 1 cut(s) 208
CviJI RGCY 9 cut(s) 75, 183, 298, 637, 946, 1010, 1045, 1095, 1140
CviKI_1 RGCY 9 cut(s) 75, 183, 298, 637, 946, 1010, 1045, 1095, 1140
DinI GGCGCC 1 cut(s) 136
DpnI GATC 3 cut(s) 261, 630, 683
DpnII GATC 3 cut(s) 259, 628, 681
Eam1104I CTCTTC 3 cut(s) 27, 108, 663
EarI CTCTTC 3 cut(s) 27, 108, 663
Eco130I CCWWGG 1 cut(s) 1090
Eco31I GGTCTC 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 776
Eco88I CYCGRG 2 cut(s) 896, 1046
Eco91I GGTNACC 1 cut(s) 118
EcoO65I GGTNACC 1 cut(s) 118
EcoRI GAATTC 1 cut(s) 511
EcoRII CCWGG 2 cut(s) 713, 781
EcoT14I CCWWGG 1 cut(s) 1090
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 1090
Esp3I CGTCTC 1 cut(s) 163
FaiI YATR 5 cut(s) 41, 228, 471, 651, 908
FaqI GGGAC 3 cut(s) 312, 459, 603
Fnu4HI GCNGC 4 cut(s) 76, 698, 787, 1141
FokI GGATG 3 cut(s) 3, 703, 1166
Fsp4HI GCNGC 4 cut(s) 76, 698, 787, 1141
GlaI GCGC 3 cut(s) 136, 338, 528
GluI GCNGC 4 cut(s) 76, 698, 787, 1141
GsuI CTGGAG 1 cut(s) 320
HaeII RGCGCY 2 cut(s) 138, 530
HaeIII GGCC 1 cut(s) 183
HapII CCGG 5 cut(s) 209, 263, 314, 542, 560
HhaI GCGC 3 cut(s) 137, 339, 529
Hin1I GRCGYC 1 cut(s) 135
Hin6I GCGC 3 cut(s) 135, 337, 527
HinP1I GCGC 3 cut(s) 135, 337, 527
HpaII CCGG 5 cut(s) 209, 263, 314, 542, 560
HphI GGTGA 4 cut(s) 112, 118, 872, 1196
Hpy188I TCNGA 6 cut(s) 220, 249, 508, 667, 745, 1071
Hpy188III TCNNGA 7 cut(s) 97, 194, 263, 319, 632, 685, 898
Hpy99I CGWCG 2 cut(s) 158, 601
HpyAV CCTTC 9 cut(s) 23, 194, 409, 430, 517, 649, 711, 982, 1031
HpyCH4III ACNGT 1 cut(s) 93
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 6 cut(s) 519, 679, 852, 1131, 1143, 1191
HpyF10VI GCNNNNNNNGC 6 cut(s) 141, 180, 703, 783, 1137, 1188
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 135
HspAI GCGC 3 cut(s) 135, 337, 527
KasI GGCGCC 1 cut(s) 134
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 3 cut(s) 259, 628, 681
LmnI GCTCC 2 cut(s) 588, 1007
Lsp1109I GCAGC 3 cut(s) 62, 684, 1127
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 118
MalI GATC 3 cut(s) 261, 630, 683
MboI GATC 3 cut(s) 259, 628, 681
MflI RGATCY 1 cut(s) 259
MhlI GDGCHC 2 cut(s) 897, 956
MluCI AATT 2 cut(s) 511, 532
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 5 cut(s) 217, 334, 385, 547, 884
MmeI TCCRAC 2 cut(s) 486, 1008
MroI TCCGGA 1 cut(s) 262
MroXI GAANNNNTTC 2 cut(s) 104, 398
MseI TTAA 3 cut(s) 234, 549, 927
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 5 cut(s) 209, 263, 314, 542, 560
MspR9I CCNGG 2 cut(s) 715, 783
MvaI CCWGG 2 cut(s) 715, 783
MvnI CGCG 2 cut(s) 337, 891
MwoI GCNNNNNNNGC 6 cut(s) 141, 180, 703, 783, 1137, 1188
NarI GGCGCC 1 cut(s) 135
NdeII GATC 3 cut(s) 259, 628, 681
NlaIV GGNNCC 5 cut(s) 136, 312, 486, 972, 1088
NmuCI GTSAC 1 cut(s) 118
PaeR7I CTCGAG 1 cut(s) 896
PdmI GAANNNNTTC 2 cut(s) 104, 398
PfeI GAWTC 6 cut(s) 593, 740, 746, 917, 1066, 1207
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 4 cut(s) 77, 699, 788, 1142
PleI GAGTC 5 cut(s) 217, 333, 384, 546, 883
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 5 cut(s) 217, 333, 384, 546, 883
Psp6I CCWGG 2 cut(s) 713, 781
PspEI GGTNACC 1 cut(s) 118
PspGI CCWGG 2 cut(s) 713, 781
PspN4I GGNNCC 5 cut(s) 136, 312, 486, 972, 1088
PsuI RGATCY 1 cut(s) 259
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 3 cut(s) 234, 549, 927
SatI GCNGC 4 cut(s) 76, 698, 787, 1141
Sau3AI GATC 3 cut(s) 259, 628, 681
SchI GAGTC 5 cut(s) 217, 334, 385, 547, 884
ScrFI CCNGG 2 cut(s) 715, 783
SduI GDGCHC 2 cut(s) 897, 956
SfaNI GCATC 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 896
SlaI CTCGAG 1 cut(s) 896
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 896
SmoI CTYRAG 1 cut(s) 896
Sse9I AATT 2 cut(s) 511, 532
SsiI CCGC 7 cut(s) 308, 359, 545, 786, 797, 974, 1182
SspDI GGCGCC 1 cut(s) 134
SspI AATATT 1 cut(s) 499
StyD4I CCNGG 2 cut(s) 713, 781
StyI CCWWGG 1 cut(s) 1090
TaaI ACNGT 1 cut(s) 93
TaiI ACGT 1 cut(s) 156
TaqI TCGA 7 cut(s) 195, 366, 494, 599, 897, 911, 1059
TasI AATT 2 cut(s) 511, 532
TauI GCSGC 1 cut(s) 789
TfiI GAWTC 6 cut(s) 593, 740, 746, 917, 1066, 1207
Tru1I TTAA 3 cut(s) 234, 549, 927
Tru9I TTAA 3 cut(s) 234, 549, 927
TscAI CASTG 1 cut(s) 146
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 3 cut(s) 75, 697, 1140
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 5, 428, 1199
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 1 cut(s) 146
XapI RAATTY 2 cut(s) 511, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 1097
XhoI CTCGAG 1 cut(s) 896
XmnI GAANNNNTTC 2 cut(s) 104, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.