AT5G04750

protein At2g27730, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014960
Physical Location & Seq
Forward (+)
1372134 .. 1373619
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04750.2

Sequence Viewer

Length: 285 bp
ATGTCGTCGGCTCGTTCTGCGATCACAAAGCTAAAGCTGGCTCGATCCTTTGGGGAGAGGCAGATTGGTGCATCGCGTTCGGTGGTATCGACTCGAGGACCGGCGATTCGGTACTTCAGTGACGATAAAGGTCGTGTGCTCAGCGAAGAGGAACGCGCGAAAGAGAGCATGTATATCCAGAAAATGGAGAGGGAGAGACTGGAGAAGAAGAAGAAACTCGAGCAAGATAAGCTAGATGGTGAGAAAGGAAGTGCCAACAAGAAACCTGAGACAAACAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IATP

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

9.99

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04750 AT5G04750
fragaria_vesca FvH4_7g05151
malus_domestica MD07G1070900.v1.1
pyrus_communis pycom07g05410
rosa_chinensis RchiOBHm_Chr1g0331731
rosa_multiflora Rmu_ssc0000089.1_g000012
rosa_roxburghii Rroxscaffold_4G00283330 Rroxscaffold_4G00318830
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119700 Rh1BG091300 Rh1CG114800 Rh1DG125200
rosa_wichuraiana Rw1G009680 Rw3G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 184
AccII CGCG 3 cut(s) 76, 156, 158
AclWI GGATC 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 100
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 184
AluBI AGCT 3 cut(s) 31, 37, 232
AluI AGCT 3 cut(s) 31, 37, 232
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 190, 263
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 2 cut(s) 93, 218
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 251
AvaI CYCGRG 2 cut(s) 93, 218
AvaII GGWCC 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BcoDI GTCTC 2 cut(s) 190, 263
BfaI CTAG 1 cut(s) 233
BlpI GCTNAGC 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 98
BmeT110I CYCGRG 2 cut(s) 93, 218
BmgT120I GGNCC 1 cut(s) 98
BmsI GCATC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 221
Bpu1102I GCTNAGC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 2 cut(s) 154, 258
BseNI ACTGG 1 cut(s) 204
Bsh1236I CGCG 3 cut(s) 76, 156, 158
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 2 cut(s) 93, 218
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 2 cut(s) 190, 263
BsoBI CYCGRG 2 cut(s) 93, 218
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 21, 44
Bsp1720I GCTNAGC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 153, 259
BspFNI CGCG 3 cut(s) 76, 156, 158
BspPI GGATC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 2 cut(s) 21, 44
Bst6I CTCTTC 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 140, 267
BstFNI CGCG 3 cut(s) 76, 156, 158
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 2 cut(s) 24, 47
BstMAI GTCTC 2 cut(s) 190, 263
BstMBI GATC 2 cut(s) 21, 44
BstMWI GCNNNNNNNGC 2 cut(s) 17, 229
BstNSI RCATGY 1 cut(s) 172
BstUI CGCG 3 cut(s) 76, 156, 158
BtgZI GCGATG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 169, 282
CviJI RGCY 6 cut(s) 11, 31, 37, 41, 232, 280
CviKI_1 RGCY 6 cut(s) 11, 31, 37, 41, 232, 280
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 140, 267
DpnI GATC 2 cut(s) 23, 46
DpnII GATC 2 cut(s) 21, 44
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 100
Eco88I CYCGRG 2 cut(s) 93, 218
FaeI CATG 2 cut(s) 172, 285
FaiI YATR 3 cut(s) 170, 174, 283
FatI CATG 2 cut(s) 168, 281
FspBI CTAG 1 cut(s) 233
GlaI GCGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 158
Hin1II CATG 2 cut(s) 172, 285
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HinfI GANTC 2 cut(s) 91, 106
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 229
HpyF3I CTNAG 2 cut(s) 140, 267
Hsp92II CATG 2 cut(s) 172, 285
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 2 cut(s) 21, 44
LpnPI CCDG 5 cut(s) 23, 114, 185, 191, 279
LweI GCATC 1 cut(s) 80
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 23, 46
MboI GATC 2 cut(s) 21, 44
MboII GAAGA 4 cut(s) 158, 217, 220, 223
MhlI GDGCHC 1 cut(s) 141
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 4 cut(s) 51, 89, 142, 183
MspI CCGG 1 cut(s) 101
MvnI CGCG 3 cut(s) 76, 156, 158
MwoI GCNNNNNNNGC 2 cut(s) 17, 229
NdeII GATC 2 cut(s) 21, 44
NlaIII CATG 2 cut(s) 172, 285
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 172
PaeR7I CTCGAG 2 cut(s) 93, 218
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PfeI GAWTC 1 cut(s) 106
PflMI CCANNNNNTGG 1 cut(s) 184
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 98
PspXI VCTCGAGB 2 cut(s) 93, 218
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
Sau3AI GATC 2 cut(s) 21, 44
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 85
SduI GDGCHC 1 cut(s) 141
SetI ASST 5 cut(s) 33, 39, 133, 234, 268
SfaNI GCATC 1 cut(s) 80
Sfr274I CTCGAG 2 cut(s) 93, 218
SinI GGWCC 1 cut(s) 98
SlaI CTCGAG 2 cut(s) 93, 218
SmlI CTYRAG 2 cut(s) 93, 218
SmoI CTYRAG 2 cut(s) 93, 218
SspMI CTAG 1 cut(s) 233
TaqI TCGA 4 cut(s) 43, 89, 94, 219
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 119
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 172
XhoI CTCGAG 2 cut(s) 93, 218
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.