FvH4_7g05151

protein At2g27730, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014960
Physical Location & Seq
Forward (+)
5530945 .. 5533092
2148 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05151.t1

Sequence Viewer

Length: 246 bp
ATGGCTATGAGATTTGTTCAGAGCCGAGTGGTGGTGCCGACTCCGACTCGAGCCTGGTTGACTCGCACCCGTTTCTACGGTGACGGAAAGGGCAAGGTTCTCAGCGAGGAGGAACGCGCTGCTGAGAACGTCTACATCAAGAAAATGGAGAGGGAGAGGCTGGAGAAGCTGAAGCAGAAGGCTGCCAAAGAAAGCGCCGAGAACGAGAAAGTAATTGCTGATAAGAAGACTGACGGGACCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IATP

Protein Analysis

82

Amino Acids

9.37

Weight (kDa)

9.79

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04750 AT5G04750
fragaria_vesca FvH4_7g05151
malus_domestica MD07G1070900.v1.1
pyrus_communis pycom07g05410
rosa_chinensis RchiOBHm_Chr1g0331731
rosa_multiflora Rmu_ssc0000089.1_g000012
rosa_roxburghii Rroxscaffold_4G00283330 Rroxscaffold_4G00318830
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119700 Rh1BG091300 Rh1CG114800 Rh1DG125200
rosa_wichuraiana Rw1G009680 Rw3G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 132
AccII CGCG 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 31
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 119, 182
AspLEI GCGC 2 cut(s) 119, 197
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 233
BbvI GCAGC 2 cut(s) 106, 169
BciT130I CCWGG 1 cut(s) 55
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 2 cut(s) 120, 183
BlsI GCNGC 2 cut(s) 121, 184
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 3 cut(s) 36, 238, 239
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 114, 115
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 106, 169
Bsh1236I CGCG 1 cut(s) 117
BshNI GGYRCC 1 cut(s) 34
BsiHKCI CYCGRG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 114, 115
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 36, 238, 239
BspT107I GGYRCC 1 cut(s) 34
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 101, 123
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 2 cut(s) 119, 197
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 106, 169
BstV2I GAAGAC 1 cut(s) 233
CfoI GCGC 2 cut(s) 119, 197
Cfr13I GGNCC 1 cut(s) 237
CviJI RGCY 6 cut(s) 5, 24, 53, 160, 169, 182
CviKI_1 RGCY 6 cut(s) 5, 24, 53, 160, 169, 182
DdeI CTNAG 2 cut(s) 101, 123
Eco47I GGWCC 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 237
EcoRII CCWGG 1 cut(s) 53
FaiI YATR 1 cut(s) 8
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 120, 183
Fsp4HI GCNGC 2 cut(s) 120, 183
GlaI GCGC 2 cut(s) 118, 196
GluI GCNGC 2 cut(s) 120, 183
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 198
HhaI GCGC 2 cut(s) 119, 197
Hin6I GCGC 2 cut(s) 117, 195
HinP1I GCGC 2 cut(s) 117, 195
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 40, 46, 61
HphI GGTGA 1 cut(s) 92
Hpy166II GTNNAC 2 cut(s) 60, 133
Hpy188I TCNGA 2 cut(s) 21, 45
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 2 cut(s) 60, 133
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 101, 123
HpySE526I ACGT 1 cut(s) 129
HspAI GCGC 2 cut(s) 117, 195
KflI GGGWCCC 1 cut(s) 237
LpnPI CCDG 3 cut(s) 40, 67, 146
Lsp1109I GCAGC 2 cut(s) 106, 169
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 1 cut(s) 238
MluCI AATT 1 cut(s) 213
MlyI GAGTC 3 cut(s) 34, 40, 55
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 4 cut(s) 100, 103, 144, 150
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIV GGNNCC 3 cut(s) 36, 238, 239
NmeAIII GCCGAG 2 cut(s) 50, 223
NmuCI GTSAC 1 cut(s) 80
PaeR7I CTCGAG 1 cut(s) 48
PkrI GCNGC 2 cut(s) 121, 184
PleI GAGTC 3 cut(s) 34, 40, 55
PpsI GAGTC 3 cut(s) 34, 40, 55
PpuMI RGGWCCY 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 3 cut(s) 36, 238, 239
PspPI GGNCC 1 cut(s) 237
PspPPI RGGWCCY 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 48
SatI GCNGC 2 cut(s) 120, 183
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 3 cut(s) 34, 40, 55
ScrFI CCNGG 1 cut(s) 55
SetI ASST 3 cut(s) 99, 132, 171
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 49
TasI AATT 1 cut(s) 213
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 119, 182
Tsp45I GTSAC 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 237
XhoI CTCGAG 1 cut(s) 48
XmiI GTMKAC 1 cut(s) 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.