Rh1BG091300

protein At2g27730, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014960
Physical Location & Seq
Forward (+)
14597803 .. 14601556
3754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG091300.1

Sequence Viewer

Length: 387 bp
ATGGCTATGAGATCTGTTCAGAGCCGAGTGGTGCTGACTCGAGCCTTGTTGACTCGCTCTATGGAGTCCTCTCGGGGAGCCGCCCGTTACTACAGTGACGGAAAGGGCAAGATTTTCAGCGAGGAGGAACGCGCTGCTGAGAACGTTTACATCAAGAAAATGGAGAGGGAGAGGCTGGAGAAGCTGAAGCAGAAGGCTGCTAAAGAAAGCGCCGAGAATGAGAAAGTAATTGCTGATAAGGTACGGATTGTTACATTGATATGTATGTATATGTCTGTCTCTAATGGGATACACCGAAGTTTGGCTTCTACATGCTTGAATTACTCTATCACTGGAAGTCAAACTAAAGGCAAATGTCTCATCATAATTTTCAGTAATGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IATP

Protein Analysis

128

Amino Acids

14.45

Weight (kDa)

9.68

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04750 AT5G04750
fragaria_vesca FvH4_7g05151
malus_domestica MD07G1070900.v1.1
pyrus_communis pycom07g05410
rosa_chinensis RchiOBHm_Chr1g0331731
rosa_multiflora Rmu_ssc0000089.1_g000012
rosa_roxburghii Rroxscaffold_4G00283330 Rroxscaffold_4G00318830
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119700 Rh1BG091300 Rh1CG114800 Rh1DG125200
rosa_wichuraiana Rw1G009680 Rw3G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 81
AclI AACGTT 1 cut(s) 144
AcsI RAATTY 1 cut(s) 381
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 283, 362
Ama87I CYCGRG 2 cut(s) 39, 72
ApeKI GCWGC 2 cut(s) 134, 197
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 2 cut(s) 134, 212
AvaI CYCGRG 2 cut(s) 39, 72
BbvI GCAGC 2 cut(s) 121, 184
BciVI GTATCC 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 283, 362
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 213
BfuI GTATCC 1 cut(s) 282
BglII AGATCT 1 cut(s) 11
BisI GCNGC 3 cut(s) 81, 135, 198
BlsI GCNGC 3 cut(s) 82, 136, 199
BmeT110I CYCGRG 2 cut(s) 39, 72
BmiI GGNNCC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 197
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse1I ACTGG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 121, 184
Bsh1236I CGCG 1 cut(s) 132
BsiHKCI CYCGRG 2 cut(s) 39, 72
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 2 cut(s) 283, 362
BsoBI CYCGRG 2 cut(s) 39, 72
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 130
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 337
BssMI GATC 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 138
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 2 cut(s) 134, 212
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 2 cut(s) 283, 362
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 121, 184
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BsuI GTATCC 1 cut(s) 282
BtsIMutI CAGTG 2 cut(s) 100, 330
CfoI GCGC 2 cut(s) 134, 212
Csp6I GTAC 1 cut(s) 242
CviAII CATG 1 cut(s) 312
CviJI RGCY 8 cut(s) 5, 24, 44, 80, 175, 184, 197, 305
CviKI_1 RGCY 8 cut(s) 5, 24, 44, 80, 175, 184, 197, 305
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 39, 72
FaeI CATG 1 cut(s) 315
FaiI YATR 8 cut(s) 8, 62, 262, 266, 270, 272, 313, 365
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FatI CATG 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 81, 135, 198
Fsp4HI GCNGC 3 cut(s) 81, 135, 198
GlaI GCGC 2 cut(s) 133, 211
GluI GCNGC 3 cut(s) 81, 135, 198
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 213
HhaI GCGC 2 cut(s) 134, 212
Hin1II CATG 1 cut(s) 315
Hin6I GCGC 2 cut(s) 132, 210
HinP1I GCGC 2 cut(s) 132, 210
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 3 cut(s) 37, 52, 65
Hpy166II GTNNAC 2 cut(s) 51, 148
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 51, 148
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 315
HspAI GCGC 2 cut(s) 132, 210
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 161, 318
Lsp1109I GCAGC 2 cut(s) 121, 184
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 86, 95, 250
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MflI RGATCY 1 cut(s) 11
MluCI AATT 4 cut(s) 228, 319, 366, 381
MlyI GAGTC 3 cut(s) 31, 46, 74
MnlI CCTC 5 cut(s) 79, 115, 118, 159, 165
MslI CAYNNNNRTG 1 cut(s) 259
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 11
NlaIII CATG 1 cut(s) 315
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 50, 238
NmuCI GTSAC 1 cut(s) 95
NspI RCATGY 1 cut(s) 315
PaeR7I CTCGAG 1 cut(s) 39
PkrI GCNGC 3 cut(s) 82, 136, 199
PleI GAGTC 3 cut(s) 31, 46, 73
PpsI GAGTC 3 cut(s) 31, 46, 73
Psp1406I AACGTT 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 39
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 259
SatI GCNGC 3 cut(s) 81, 135, 198
Sau3AI GATC 1 cut(s) 11
SchI GAGTC 3 cut(s) 31, 46, 74
SetI ASST 3 cut(s) 147, 186, 243
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 4 cut(s) 228, 319, 366, 381
SsiI CCGC 1 cut(s) 81
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 40
TasI AATT 4 cut(s) 228, 319, 366, 381
TauI GCSGC 1 cut(s) 83
TscAI CASTG 2 cut(s) 100, 337
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 134, 197
Tsp45I GTSAC 1 cut(s) 95
TspGWI ACGGA 2 cut(s) 114, 259
TspRI CASTG 2 cut(s) 100, 337
XapI RAATTY 1 cut(s) 381
XceI RCATGY 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.