pycom07g05410

protein At2g27730, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014960
Physical Location & Seq
Reverse (-)
4668538 .. 4669096
559 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05410.2

Sequence Viewer

Length: 339 bp
ATGGCGGCAATGAGATCCGGTCAGAGCCTGGCGGTGCTAACTCGAGCGTTGATCACTCGCTCCATGGAGTCGTCTCGGGGAGCCACTCGCTACTTGAGCTCAGGCAACGGCAAAATCCTCAGCGAGGAGGAGCGCGCTGCCGAGAATGTCTACATCCAAAGAAAGGAGAGGGAGAGATTGGAGAAGCAGAAGGCTCAGAAGGAAAAGGCCGAGAAAGCGAAAGAAAATGCTGATAAGGTGCGGATTAATTCTTTATTGAGGATATGTGTGTTTCTGTGTCTGTGTGTGGATTTTACACTGTGCCGAATGAGACTGGCACAAATTTACAGAGACCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IATP

Protein Analysis

113

Amino Acids

12.86

Weight (kDa)

9.78

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04750 AT5G04750
fragaria_vesca FvH4_7g05151
malus_domestica MD07G1070900.v1.1
pyrus_communis pycom07g05410
rosa_chinensis RchiOBHm_Chr1g0331731
rosa_multiflora Rmu_ssc0000089.1_g000012
rosa_roxburghii Rroxscaffold_4G00283330 Rroxscaffold_4G00318830
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119700 Rh1BG091300 Rh1CG114800 Rh1DG125200
rosa_wichuraiana Rw1G009680 Rw3G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 135
AciI CCGC 3 cut(s) 5, 32, 241
AclWI GGATC 1 cut(s) 9
AcsI RAATTY 1 cut(s) 321
AfiI CCNNNNNNNGG 2 cut(s) 124, 163
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 99
AluI AGCT 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 3 cut(s) 78, 304, 324
AlwI GGATC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 28
Ama87I CYCGRG 2 cut(s) 42, 75
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 321
AseI ATTAAT 1 cut(s) 246
AspLEI GCGC 2 cut(s) 135, 137
AvaI CYCGRG 2 cut(s) 42, 75
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 29
BclI TGATCA 1 cut(s) 51
BcoDI GTCTC 3 cut(s) 78, 304, 324
BisI GCNGC 2 cut(s) 6, 138
BlsI GCNGC 2 cut(s) 7, 139
Bme1390I CCNGG 1 cut(s) 29
BmeT110I CYCGRG 2 cut(s) 42, 75
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 29
Bpu10I CCTNAGC 2 cut(s) 100, 119
BpuEI CTTGAG 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 17
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 163
Bse1I ACTGG 1 cut(s) 318
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 124, 163
BseMI GCAATG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 114, 133, 209
BseNI ACTGG 1 cut(s) 318
BsePI GCGCGC 1 cut(s) 133
BseRI GAGGAG 2 cut(s) 140, 143
BseXI GCAGC 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 1 cut(s) 209
BsiHKAI GWGCWC 1 cut(s) 101
BsiHKCI CYCGRG 2 cut(s) 42, 75
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 124, 163
BsmAI GTCTC 3 cut(s) 78, 304, 324
BsmBI CGTCTC 1 cut(s) 78
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 42, 75
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 2 cut(s) 14, 51
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 3 cut(s) 5, 32, 241
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 113, 132, 208
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 1 cut(s) 9
BspTNI GGTCTC 1 cut(s) 324
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 1 cut(s) 63
BssHII GCGCGC 1 cut(s) 133
BssMI GATC 2 cut(s) 14, 51
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 135
BstDEI CTNAG 3 cut(s) 100, 119, 195
BstDSI CCRYGG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 2 cut(s) 135, 137
BstKTI GATC 2 cut(s) 17, 54
BstMAI GTCTC 3 cut(s) 78, 304, 324
BstMBI GATC 2 cut(s) 14, 51
BstMWI GCNNNNNNNGC 2 cut(s) 96, 215
BstNI CCWGG 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 27
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 135
CaiI CAGNNNCTG 1 cut(s) 28
CfoI GCGC 2 cut(s) 135, 137
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 27, 83, 99, 194, 209
CviKI_1 RGCY 5 cut(s) 27, 83, 99, 194, 209
DdeI CTNAG 3 cut(s) 100, 119, 195
DpnI GATC 2 cut(s) 16, 53
DpnII GATC 2 cut(s) 14, 51
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 42, 75
EcoICRI GAGCTC 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 27
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 265
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 51
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 6, 138
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 2 cut(s) 6, 138
GlaI GCGC 2 cut(s) 134, 136
GluI GCNGC 2 cut(s) 6, 138
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 18
HhaI GCGC 2 cut(s) 135, 137
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 133, 135
HinP1I GCGC 2 cut(s) 133, 135
HinfI GANTC 1 cut(s) 68
HpaII CCGG 1 cut(s) 18
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 24, 198
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 184, 193
HpyCH4III ACNGT 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 215
HpyF3I CTNAG 3 cut(s) 100, 119, 195
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 133, 135
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 14, 51
LmnI GCTCC 3 cut(s) 65, 80, 130
LpnPI CCDG 5 cut(s) 14, 31, 41, 87, 299
Lsp1109I GCAGC 1 cut(s) 124
MalI GATC 2 cut(s) 16, 53
MboI GATC 2 cut(s) 14, 51
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 247, 321
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 5 cut(s) 118, 121, 128, 162, 252
MseI TTAA 1 cut(s) 246
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 29
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 96, 215
NcoI CCATGG 1 cut(s) 63
NdeII GATC 2 cut(s) 14, 51
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 2 cut(s) 166, 235
PaeR7I CTCGAG 1 cut(s) 42
PauI GCGCGC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 7, 139
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PshBI ATTAAT 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 82
PspXI VCTCGAGB 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 14
PteI GCGCGC 1 cut(s) 133
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 6, 138
Sau3AI GATC 2 cut(s) 14, 51
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 29
SduI GDGCHC 1 cut(s) 101
SetI ASST 3 cut(s) 101, 240, 336
Sfr274I CTCGAG 1 cut(s) 42
SlaI CTCGAG 1 cut(s) 42
SmlI CTYRAG 2 cut(s) 42, 94
SmoI CTYRAG 2 cut(s) 42, 94
Sse9I AATT 2 cut(s) 247, 321
SsiI CCGC 3 cut(s) 5, 32, 241
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 43
TasI AATT 2 cut(s) 247, 321
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 137
TspRI CASTG 1 cut(s) 303
VspI ATTAAT 1 cut(s) 246
XagI CCTNNNNNAGG 1 cut(s) 122
XapI RAATTY 1 cut(s) 321
XhoI CTCGAG 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.