Rh1AG119700

protein At2g27730, mitochondrial-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
20560623 .. 20563081
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG119700.1

Sequence Viewer

Length: 312 bp
ATGGCTATGAGATCTGTTCAGAGCCGAGTGGTACTGACTCGAGCCTTGTTGACTCGCTCTATGGAGTCCTCTCGGGGAGCCACCCGTTACTACAGTGACGGAAAGGGCAAGATTCTCAGCGAGGAGGAACGCGCTGCTGAGAACGTCTACATCAAGAAAATGGAGAGGGAGAGGCTGGAGAAGCTGAAGCAGAAGGCTGCCAAAGAAAGCGCCGAGAATGAGAAAGTAATTGCTGATAAGGTACGGATTGTTACATTGATATGTATATATGTCTCTGTCTGTATCTCTGTGTGTGTATATGTCTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

103

Amino Acids

11.72

Weight (kDa)

9.41

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014960)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 132
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 33, 243
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 277
Ama87I CYCGRG 2 cut(s) 39, 72
ApeKI GCWGC 2 cut(s) 134, 197
AspLEI GCGC 2 cut(s) 134, 212
AvaI CYCGRG 2 cut(s) 39, 72
BbvI GCAGC 2 cut(s) 121, 184
BcoDI GTCTC 1 cut(s) 277
BfmI CTRYAG 1 cut(s) 91
BfoI RGCGCY 1 cut(s) 213
BglII AGATCT 1 cut(s) 11
BisI GCNGC 2 cut(s) 135, 198
BlsI GCNGC 2 cut(s) 136, 199
BmeT110I CYCGRG 2 cut(s) 39, 72
BmiI GGNNCC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 129, 130
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 121, 184
Bsh1236I CGCG 1 cut(s) 132
BsiHKCI CYCGRG 2 cut(s) 39, 72
BsmAI GTCTC 1 cut(s) 277
BsoBI CYCGRG 2 cut(s) 39, 72
Bsp143I GATC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 129, 130
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 79
BssMI GATC 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 95
BstDEI CTNAG 2 cut(s) 116, 138
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 213
BstHHI GCGC 2 cut(s) 134, 212
BstKTI GATC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 2 cut(s) 121, 184
BstX2I RGATCY 1 cut(s) 11
BstYI RGATCY 1 cut(s) 11
BtsIMutI CAGTG 1 cut(s) 100
CfoI GCGC 2 cut(s) 134, 212
Csp6I GTAC 2 cut(s) 32, 242
CviJI RGCY 7 cut(s) 5, 24, 44, 80, 175, 184, 197
CviKI_1 RGCY 7 cut(s) 5, 24, 44, 80, 175, 184, 197
CviQI GTAC 2 cut(s) 32, 242
DdeI CTNAG 2 cut(s) 116, 138
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 39, 72
FaiI YATR 8 cut(s) 8, 62, 262, 266, 268, 270, 298, 300
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 135, 198
Fsp4HI GCNGC 2 cut(s) 135, 198
GlaI GCGC 2 cut(s) 133, 211
GluI GCNGC 2 cut(s) 135, 198
GsuI CTGGAG 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 213
HhaI GCGC 2 cut(s) 134, 212
Hin6I GCGC 2 cut(s) 132, 210
HinP1I GCGC 2 cut(s) 132, 210
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 4 cut(s) 37, 52, 65, 112
Hpy166II GTNNAC 2 cut(s) 51, 148
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 51, 148
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 2 cut(s) 116, 138
HpySE526I ACGT 1 cut(s) 144
HspAI GCGC 2 cut(s) 132, 210
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 1 cut(s) 161
Lsp1109I GCAGC 2 cut(s) 121, 184
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 86, 95, 250
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MflI RGATCY 1 cut(s) 11
MluCI AATT 1 cut(s) 228
MlyI GAGTC 3 cut(s) 31, 46, 74
MnlI CCTC 5 cut(s) 79, 115, 118, 159, 165
MslI CAYNNNNRTG 1 cut(s) 259
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 2 cut(s) 50, 238
NmuCI GTSAC 1 cut(s) 95
PaeR7I CTCGAG 1 cut(s) 39
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 136, 199
PleI GAGTC 3 cut(s) 31, 46, 73
PpsI GAGTC 3 cut(s) 31, 46, 73
PspN4I GGNNCC 1 cut(s) 79
PspXI VCTCGAGB 1 cut(s) 39
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 2 cut(s) 33, 243
RsaNI GTAC 2 cut(s) 32, 242
RseI CAYNNNNRTG 1 cut(s) 259
SatI GCNGC 2 cut(s) 135, 198
Sau3AI GATC 1 cut(s) 11
SchI GAGTC 3 cut(s) 31, 46, 74
SetI ASST 3 cut(s) 147, 186, 243
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 1 cut(s) 228
TaaI ACNGT 1 cut(s) 95
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 40
TasI AATT 1 cut(s) 228
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 134, 197
Tsp45I GTSAC 1 cut(s) 95
TspGWI ACGGA 2 cut(s) 114, 259
TspRI CASTG 1 cut(s) 100
XhoI CTCGAG 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.