MD07G1070900.v1.1

protein At2g27730, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0014960
Physical Location & Seq
Reverse (-)
6715775 .. 6718406
2632 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1070900.v1.1.491

Sequence Viewer

Length: 249 bp
ATGAGATCCGGTCAAAGCCTGGCGGTGCTAACTCGAGCGTTGATCACTCGCTCCATGGAGTCGTCTCGGGGAGCCACTCGCTACTTGAGCGCAGGCACAGGCAAAGTCCTCAGCGAGGAGGAGCGTGCCGCCGAGAATGTCTACATCCAGAGAAAGGAGAGGGAGAGATTGGCGAAGCAGAAGGCTGAGAAGGAAAAGGCCGAGAAAGCGAAAGAAAATGCTGATAAGAAGGCTGATGGGACACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IATP

Protein Analysis

83

Amino Acids

9.15

Weight (kDa)

9.84

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04750 AT5G04750
fragaria_vesca FvH4_7g05151
malus_domestica MD07G1070900.v1.1
pyrus_communis pycom07g05410
rosa_chinensis RchiOBHm_Chr1g0331731
rosa_multiflora Rmu_ssc0000089.1_g000012
rosa_roxburghii Rroxscaffold_4G00283330 Rroxscaffold_4G00318830
rosa_rugosa Rorug01G0095900
rosa_samantha Rh1AG119700 Rh1BG091300 Rh1CG114800 Rh1DG125200
rosa_wichuraiana Rw1G009680 Rw3G014220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 23, 129
AfiI CCNNNNNNNGG 2 cut(s) 115, 154
AjnI CCWGG 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 69
Ama87I CYCGRG 2 cut(s) 33, 66
AoxI GGCC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 92
AvaI CYCGRG 2 cut(s) 33, 66
BbvCI CCTCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 20
BmeT110I CYCGRG 2 cut(s) 33, 66
BmiI GGNNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 154
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 115, 154
BseMII CTCAG 2 cut(s) 124, 177
BseRI GAGGAG 2 cut(s) 131, 134
BshFI GGCC 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 33, 66
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 115, 154
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsnI GGCC 1 cut(s) 200
BsoBI CYCGRG 2 cut(s) 33, 66
Bsp143I GATC 2 cut(s) 5, 42
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 23, 129
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 123, 178
BspLI GGNNCC 1 cut(s) 73
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 2 cut(s) 5, 42
BssT1I CCWWGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 20
BstC8I GCNNGC 2 cut(s) 94, 126
BstDEI CTNAG 2 cut(s) 110, 186
BstDSI CCRYGG 1 cut(s) 54
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 1 cut(s) 144
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 8, 45
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 2 cut(s) 5, 42
BstMWI GCNNNNNNNGC 2 cut(s) 87, 206
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 94, 126
CfoI GCGC 1 cut(s) 92
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 18, 74, 185, 200, 233
CviKI_1 RGCY 5 cut(s) 18, 74, 185, 200, 233
DdeI CTNAG 2 cut(s) 110, 186
DpnI GATC 2 cut(s) 7, 44
DpnII GATC 2 cut(s) 5, 42
Eco130I CCWWGG 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 33, 66
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 1 cut(s) 58
FaiI YATR 1 cut(s) 56
FatI CATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 129
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 129
HaeIII GGCC 1 cut(s) 200
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 92
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 1 cut(s) 59
HpaII CCGG 1 cut(s) 9
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 175, 184, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 206
HpyF3I CTNAG 2 cut(s) 110, 186
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 2 cut(s) 5, 42
LmnI GCTCC 3 cut(s) 56, 71, 121
LpnPI CCDG 6 cut(s) 5, 22, 32, 78, 84, 161
MalI GATC 2 cut(s) 7, 44
MboI GATC 2 cut(s) 5, 42
MflI RGATCY 1 cut(s) 5
MlyI GAGTC 1 cut(s) 68
MnlI CCTC 4 cut(s) 109, 112, 119, 153
MseI TTAA 1 cut(s) 247
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 87, 206
NcoI CCATGG 1 cut(s) 54
NdeII GATC 2 cut(s) 5, 42
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 73
NmeAIII GCCGAG 2 cut(s) 157, 226
PaeR7I CTCGAG 1 cut(s) 33
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 73
PspXI VCTCGAGB 1 cut(s) 33
PsuI RGATCY 1 cut(s) 5
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 5, 42
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 1 cut(s) 20
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 2 cut(s) 33, 85
SmoI CTYRAG 2 cut(s) 33, 85
SsiI CCGC 2 cut(s) 23, 129
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 1 cut(s) 54
TaqI TCGA 1 cut(s) 34
TauI GCSGC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.