Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Forward (+)

1434774 .. 1437495

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTACTTGGAGTGGTTTCAACGTCTCTTCTTCTCCGTTGCTTAGGCTTCGGTCTTCCTCCGTCTCAAATGTCACTAAGCTTCCGTTTCTCTCTCCTATTTGCCGGCGTCGGTTACTGGCAGAACGCTTTGGTCTCGCAACTGTCGTTGTTACGCGCCAAAACCTCACGGTTACTCCGTCGTCTGCGGCGGTGGAAGCTCGTATCTCAGGGAAAAGAGAACCTATGACGCCTCCGTATAACATATTGATCACTGGCTCAACCAAAGGTATAGGATATGCATTAGCTAGAGAGTTTCTGAAAGCAGGCGACAATGTTGTGATTTGCTCTAGATCAGCTGAACGAGTTGAGACTGCTGTTCAGAGTCTTAAGGAAGAATTTGGGGAGCATGTGTGGGGAACTAAGTGTGATGTTACGGAAGGGAAGGATGTGAGGGAACTTGTAGCTTATAGTCAGAAGAATCTTAAATACATTGACATTTGGATAAATAATGCGGGATCTAATGCATATAGCTTTAAACCTTTGGCAGAGGCCTCAGATGAGGATCTTATTGAAGTTGTGAAAACCAACACTCTAGGTCTCATGTTATGTTGCCGAGAGGCAATGAATATGATGTTGACCCAATCTCGAGGTGGTCATATCTTCAATATTGATGGAGCTGGTTCAGATGGGAGACCAACACCCAGATTTGCTGCATATGGTGCAACTAAACGGAGTGTCGTTCACCTGACAAAGTCATTACAGGCAGAGTTGCAGATGCAAGATGTCAAAAATGTCGTGGTGCATAATCTATCGCCTGGAATGGTCACAACTGATCTGCTCATGTCCGGAGCAACTACAAAACAAGCCAAGTTCTTCATTAATGTTTTGGCAGAGCCAGCCGAAGTGGTGGCTGAGTACCTTGTCCCAAACATAAGGGCAATACCGGCTAGCGGATCTATGAAGCCGACTTACATCCGTTTCCTAACTGGAATCAAAGCCTACACCAAAATATTCTCAAGAGTTGCGTTGGGAGCAAGGAAGAACAGGTATGTTACTGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

348

Amino Acids

38.15

Weight (kDa)

9.49

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	82 - 276	2e-44	short chain dehydrogenase
KR	PF08659	82 - 190	9.5e-09	KR domain
Epimerase	PF01370	82 - 267	4.2e-06	NAD dependent epimerase/dehydratase family
SDR	PF23441	82 - 278	7.9e-06	SDR-like rossmann domain
adh_short_C2	PF13561	88 - 279	7.4e-33	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	827
AciI	CCGC	4 cut(s)	188, 191, 494, 933
AclWI	GGATC	3 cut(s)	505, 552, 943
AcsI	RAATTY	1 cut(s)	377
AcyI	GRCGYC	2 cut(s)	109, 230
AfaI	GTAC	1 cut(s)	899
AfiI	CCNNNNNNNGG	1 cut(s)	932
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	22, 554, 646
AjnI	CCWGG	1 cut(s)	796
AluBI	AGCT	7 cut(s)	82, 200, 287, 338, 446, 513, 659
AluI	AGCT	7 cut(s)	82, 200, 287, 338, 446, 513, 659
Alw26I	GTCTC	6 cut(s)	31, 70, 140, 344, 584, 667
AlwI	GGATC	3 cut(s)	505, 552, 943
Ama87I	CYCGRG	1 cut(s)	627
Aor13HI	TCCGGA	1 cut(s)	827
AoxI	GGCC	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	692
ApoI	RAATTY	1 cut(s)	377
AseI	ATTAAT	1 cut(s)	861
AspLEI	GCGC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	716
AsuNHI	GCTAGC	1 cut(s)	929
AvaI	CYCGRG	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
BbsI	GAAGAC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	2 cut(s)	647, 662
BciT130I	CCWGG	1 cut(s)	798
BclI	TGATCA	1 cut(s)	249
BcoDI	GTCTC	6 cut(s)	31, 70, 140, 344, 584, 667
BfaI	CTAG	4 cut(s)	288, 330, 575, 930
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	189, 693
BlsI	GCNGC	2 cut(s)	190, 694
Bme1390I	CCNGG	1 cut(s)	798
BmeT110I	CYCGRG	1 cut(s)	627
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	747
BmtI	GCTAGC	1 cut(s)	933
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	982
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	109, 230
BsaI	GGTCTC	3 cut(s)	140, 584, 667
BsaWI	WCCGGW	1 cut(s)	827
BsaXI	ACNNNNNCTCC	4 cut(s)	160, 190, 377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	932
Bse118I	RCCGGY	2 cut(s)	105, 925
Bse1I	ACTGG	3 cut(s)	123, 259, 973
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	827
BseBI	CCWGG	1 cut(s)	798
BseGI	GGATG	2 cut(s)	433, 954
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	932
BseMI	GCAATG	1 cut(s)	609
BseMII	CTCAG	3 cut(s)	222, 549, 885
BseNI	ACTGG	3 cut(s)	123, 259, 973
BseXI	GCAGC	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	533
BsiHKCI	CYCGRG	1 cut(s)	627
BsiSI	CCGG	3 cut(s)	106, 828, 926
BslFI	GGGAC	1 cut(s)	890
BslI	CCNNNNNNNGG	1 cut(s)	932
BsmAI	GTCTC	6 cut(s)	31, 70, 140, 344, 584, 667
BsmBI	CGTCTC	2 cut(s)	31, 70
BsmFI	GGGAC	1 cut(s)	890
BsnI	GGCC	1 cut(s)	533
Bso31I	GGTCTC	3 cut(s)	140, 584, 667
BsoBI	CYCGRG	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	827
Bsp143I	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
BspACI	CCGC	4 cut(s)	188, 191, 494, 933
BspANI	GGCC	1 cut(s)	533
BspCNI	CTCAG	3 cut(s)	221, 548, 886
BspEI	TCCGGA	1 cut(s)	827
BspFNI	CGCG	1 cut(s)	157
BspOI	GCTAGC	1 cut(s)	933
BspPI	GGATC	3 cut(s)	505, 552, 943
BspTI	CTTAAG	1 cut(s)	368
BspTNI	GGTCTC	3 cut(s)	140, 584, 667
BsrDI	GCAATG	1 cut(s)	609
BsrFI	RCCGGY	2 cut(s)	105, 925
BsrI	ACTGG	3 cut(s)	123, 259, 973
BssAI	RCCGGY	2 cut(s)	105, 925
BssMI	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
BssNI	GRCGYC	2 cut(s)	109, 230
Bst2UI	CCWGG	1 cut(s)	798
Bst4CI	ACNGT	2 cut(s)	145, 172
Bst6I	CTCTTC	2 cut(s)	34, 1035
BstACI	GRCGYC	2 cut(s)	109, 230
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	701
BstC8I	GCNNGC	4 cut(s)	107, 307, 879, 931
BstDEI	CTNAG	6 cut(s)	44, 78, 208, 402, 535, 894
BstF5I	GGATG	2 cut(s)	433, 954
BstFNI	CGCG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	6 cut(s)	252, 335, 500, 547, 817, 938
BstMAI	GTCTC	6 cut(s)	31, 70, 140, 344, 584, 667
BstMBI	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 701, 878, 926, 1013
BstNI	CCWGG	1 cut(s)	798
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	796
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	3 cut(s)	497, 544, 935
BstYI	RGATCY	3 cut(s)	497, 544, 935
BsuRI	GGCC	1 cut(s)	533
BtsCI	GGATG	2 cut(s)	433, 954
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	4 cut(s)	107, 307, 879, 931
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	2 cut(s)	105, 925
CseI	GACGC	2 cut(s)	98, 238
Csp6I	GTAC	1 cut(s)	898
CviAII	CATG	3 cut(s)	389, 583, 823
CviQI	GTAC	1 cut(s)	898
DdeI	CTNAG	6 cut(s)	44, 78, 208, 402, 535, 894
DpnI	GATC	6 cut(s)	251, 334, 499, 546, 816, 937
DpnII	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
DraI	TTTAAA	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	34, 1035
EarI	CTCTTC	2 cut(s)	34, 1035
Eco147I	AGGCCT	1 cut(s)	533
Eco31I	GGTCTC	3 cut(s)	140, 584, 667
Eco88I	CYCGRG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	796
EcoT22I	ATGCAT	2 cut(s)	283, 508
Esp3I	CGTCTC	2 cut(s)	31, 70
FaeI	CATG	3 cut(s)	392, 586, 826
FaqI	GGGAC	1 cut(s)	890
FatI	CATG	3 cut(s)	388, 582, 822
FauI	CCCGC	1 cut(s)	487
FauNDI	CATATG	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	2 cut(s)	189, 693
FokI	GGATG	2 cut(s)	440, 941
Fsp4HI	GCNGC	2 cut(s)	189, 693
FspBI	CTAG	4 cut(s)	288, 330, 575, 930
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	2 cut(s)	189, 693
HaeIII	GGCC	1 cut(s)	533
HapII	CCGG	3 cut(s)	106, 828, 926
HgaI	GACGC	2 cut(s)	98, 238
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	2 cut(s)	109, 230
Hin1II	CATG	3 cut(s)	392, 586, 826
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	364, 460, 972
HpaII	CCGG	3 cut(s)	106, 828, 926
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	2 cut(s)	618, 724
Hpy188I	TCNGA	5 cut(s)	300, 363, 456, 538, 667
Hpy188III	TCNNGA	4 cut(s)	330, 627, 828, 999
Hpy8I	GTNNAC	2 cut(s)	618, 724
Hpy99I	CGWCG	2 cut(s)	114, 184
HpyAV	CCTTC	2 cut(s)	413, 418
HpyCH4III	ACNGT	2 cut(s)	145, 172
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	7 cut(s)	281, 506, 695, 704, 754, 760, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 701, 878, 926, 1013
HpyF3I	CTNAG	6 cut(s)	44, 78, 208, 402, 535, 894
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	2 cut(s)	109, 230
Hsp92II	CATG	3 cut(s)	392, 586, 826
HspAI	GCGC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	827
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
LmnI	GCTCC	4 cut(s)	385, 656, 830, 1013
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	1 cut(s)	747
MaeI	CTAG	4 cut(s)	288, 330, 575, 930
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	7 cut(s)	73, 114, 151, 172, 412, 805, 1033
MalI	GATC	6 cut(s)	251, 334, 499, 546, 816, 937
MboI	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
MboII	GAAGA	8 cut(s)	21, 24, 48, 386, 469, 634, 847, 1033
MflI	RGATCY	3 cut(s)	497, 544, 935
MluCI	AATT	1 cut(s)	377
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	9 cut(s)	70, 176, 243, 426, 523, 535, 544, 592, 623
Mph1103I	ATGCAT	2 cut(s)	283, 508
MroI	TCCGGA	1 cut(s)	827
MroNI	GCCGGC	1 cut(s)	105
MseI	TTAA	4 cut(s)	369, 465, 516, 861
MspA1I	CMGCKG	1 cut(s)	338
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	3 cut(s)	106, 828, 926
MspR9I	CCNGG	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	798
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	5 cut(s)	197, 701, 878, 926, 1013
NaeI	GCCGGC	1 cut(s)	107
NdeI	CATATG	1 cut(s)	697
NdeII	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
NgoMIV	GCCGGC	1 cut(s)	105
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	3 cut(s)	392, 586, 826
NmeAIII	GCCGAG	1 cut(s)	620
NmuCI	GTSAC	2 cut(s)	73, 805
NsiI	ATGCAT	2 cut(s)	283, 508
NspI	RCATGY	1 cut(s)	392
PaeR7I	CTCGAG	1 cut(s)	627
PceI	AGGCCT	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 176
PdiI	GCCGGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	460, 972
PflFI	GACNNNGTC	1 cut(s)	733
PkrI	GCNGC	2 cut(s)	190, 694
PleI	GAGTC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	372
PshBI	ATTAAT	1 cut(s)	861
Psp6I	CCWGG	1 cut(s)	796
PspGI	CCWGG	1 cut(s)	796
PsuI	RGATCY	3 cut(s)	497, 544, 935
PsyI	GACNNNGTC	1 cut(s)	733
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	899
RsaNI	GTAC	1 cut(s)	898
SaqAI	TTAA	4 cut(s)	369, 465, 516, 861
SatI	GCNGC	2 cut(s)	189, 693
Sau3AI	GATC	6 cut(s)	249, 332, 497, 544, 814, 935
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	747
Sfr274I	CTCGAG	1 cut(s)	627
SlaI	CTCGAG	1 cut(s)	627
SmlI	CTYRAG	3 cut(s)	368, 627, 997
SmoI	CTYRAG	3 cut(s)	368, 627, 997
Sse9I	AATT	1 cut(s)	377
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	4 cut(s)	188, 191, 494, 933
SspI	AATATT	2 cut(s)	649, 993
SspMI	CTAG	4 cut(s)	288, 330, 575, 930
StuI	AGGCCT	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	796
TaaI	ACNGT	2 cut(s)	145, 172
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	628
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	377
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	460, 972
Tru1I	TTAA	4 cut(s)	369, 465, 516, 861
Tru9I	TTAA	4 cut(s)	369, 465, 516, 861
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	2 cut(s)	73, 805
TseI	GCWGC	1 cut(s)	692
Tsp45I	GTSAC	2 cut(s)	73, 805
TspDTI	ATGAA	3 cut(s)	620, 847, 956
TspGWI	ACGGA	8 cut(s)	27, 52, 75, 168, 225, 431, 727, 947
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	733
Vha464I	CTTAAG	1 cut(s)	368
VspI	ATTAAT	1 cut(s)	861
XapI	RAATTY	1 cut(s)	377
XbaI	TCTAGA	1 cut(s)	329
XceI	RCATGY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
XhoI	CTCGAG	1 cut(s)	627
XspI	CTAG	4 cut(s)	288, 330, 575, 930
Zsp2I	ATGCAT	2 cut(s)	283, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.