Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009429

Physical Location & Seq

Genomic Coordinates Reverse (-)

5473575 .. 5479469

Gene Structure 5895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCATGAAGGCAGCAGCAGCGTCCACACCTCTCTTGTCATTCTCATCCAAATCCCACCTCTCTCGCCGTTTCCCTCAATTCGACCGTGGTCGCAGTTTTCCTACTACTAGTTGTTGTTGTTGTGGTGCTCGTCCAAGTCTGAGCAGCTATGCCACCTACGCTTCCTTACTAAGACCCAAACCCAAAGCCGAAGCCTCCCAGAATACAAGACGCCCCATGCTTCCTCCTTACAATGTCCTCATCACCGGTTCAACCAAAGGTATTGGTTTTGCTCTAGCCAAAGAGTTCCTCAGAGCAGGAGATAACGTCGTGATTTGCTCAAGATCAGCTGAACGAGTTGAATCTACTGTTCGGAGCCTTAGAGAAGAGTTTGGCGAGCAACATGTGTGGGGTACTAAATGTGATGTTAGAGAAGGGAAAGATGTGAAGGACTTGGTGGCCTTTGCACAAAAGAACCTGAAATACATTGATATATGGATTAATAATGCAGGATCAAATGCATATAGTTATAAACCCCTGGCAGAGGCCTCAGATGAAGATCTTATTGAAGTTGTCACTACAAATACACTTGGTTTGATGATATGTTGCCGTGAGGCAATAAAGATGATGTTGGATCAGCCTCGAGGTGGTCATGTTTTCAACATTGATGGAGCTGGTTCTGATGGAAGACCCACCCCAAGGTTTGCTGCATATGGAGCAACAAAGCGTAGTGTGGTGCATTTGACAAAATCATTACAGGCAGAATTGCAGATGCAAGATGTCAAAGATGTCATAGTGCATAACTTGTCGCCCGGAATGGTTACAACTGATCTTCTCATGTCTGGTGCAACTACGAAGCAGGCAAAGTTTTTCATCAATGTTCTGGCAGAACCAGCTGAAGTGGTTGCTGAGTATCTGGTTCCAAATATAAGATCCATCCCTACCAATGGATCAGTGAAGCCCACATACATCCGTTTCCTAACTGGGATCAAAGCCTACTCCCAGATATTCTCAAGATTTGCTTTTGGTGCACGAAGGAACAGATATATGCTCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009536 GO:0009987 GO:0010304 GO:0015994 GO:0015996 GO:0016491 GO:0016614 GO:0016616 GO:0019439 GO:0019538 GO:0030163 GO:0033013 GO:0033015 GO:0034256 GO:0034641 GO:0042440 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Myb_DNA-binding adh_short

Protein Analysis

348

Amino Acids

38.26

Weight (kDa)

9.4

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDR	PF23441	79 - 277	8.4e-08	SDR-like rossmann domain
adh_short	PF00106	80 - 275	1.1e-42	short chain dehydrogenase
KR	PF08659	80 - 188	4e-07	KR domain
adh_short_C2	PF13561	86 - 278	2.7e-31	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009429)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04900
fragaria_vesca	FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100 FvH4_7g05100
malus_domestica	MD02G1262200.v1.1
prunus_persica	Prupe.2G064200_v2.0.a1 Prupe.2G064200_v2.0.a1
pyrus_communis	pycom02g22420
rosa_chinensis	RchiOBHm_Chr1g0331471
rosa_laevigata	RLG00000029735
rosa_multiflora	Rmu_sc0001567.1_g000007 Rmu_sc0003791.1_g000011
rosa_roxburghii	Rroxscaffold_4G00319100
rosa_rugosa	Rorug01G0093100
rosa_samantha	Rh1AG118400 Rh1BG089100 Rh1CG113200 Rh1DG122400
rosa_wichuraiana	Rw1G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AbsI	CCTCGAGG	1 cut(s)	624
AclWI	GGATC	5 cut(s)	502, 624, 909, 940, 977
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	900
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	397
AfiI	CCNNNNNNNGG	4 cut(s)	526, 629, 681, 929
AflIII	ACRYGT	1 cut(s)	385
AgeI	ACCGGT	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	255, 344, 551, 643
AhlI	ACTAGT	1 cut(s)	110
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	4 cut(s)	150, 332, 656, 878
AluI	AGCT	4 cut(s)	150, 332, 656, 878
Alw21I	GWGCWC	2 cut(s)	133, 1015
Alw44I	GTGCAC	1 cut(s)	1011
AlwI	GGATC	5 cut(s)	502, 624, 909, 940, 977
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	3 cut(s)	3, 441, 528
ApaLI	GTGCAC	1 cut(s)	1011
ApeKI	GCWGC	5 cut(s)	14, 17, 20, 147, 689
AseI	ATTAAT	1 cut(s)	483
AsiGI	ACCGGT	1 cut(s)	248
AsuC2I	CCSGG	1 cut(s)	795
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	1015
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	932, 964
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	133, 1015
BbvI	GCAGC	5 cut(s)	26, 29, 32, 159, 676
BccI	CCATC	3 cut(s)	644, 659, 926
BceAI	ACGGC	2 cut(s)	54, 576
BciT130I	CCWGG	1 cut(s)	521
BcnI	CCSGG	1 cut(s)	795
BcuI	ACTAGT	1 cut(s)	110
BfaI	CTAG	2 cut(s)	111, 278
BglI	GCCNNNNNGGC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	541
BisI	GCNGC	5 cut(s)	15, 18, 21, 148, 690
BlsI	GCNGC	5 cut(s)	16, 19, 22, 149, 691
Bme1390I	CCNGG	2 cut(s)	521, 795
BmeT110I	CYCGRG	1 cut(s)	624
BmiI	GGNNCC	2 cut(s)	359, 903
BmrFI	CCNGG	2 cut(s)	521, 795
BmrI	ACTGGG	1 cut(s)	975
BmsI	GCATC	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	975
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	676
BpuEI	CTTGAG	2 cut(s)	307, 979
BpuMI	CCSGG	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	214
BsaJI	CCNNGG	3 cut(s)	88, 519, 680
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	526, 629, 681, 929
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	970
Bse8I	GATNNNNATC	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	3 cut(s)	88, 519, 680
BseGI	GGATG	3 cut(s)	47, 918, 951
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	4 cut(s)	526, 629, 681, 929
BseMII	CTCAG	4 cut(s)	134, 307, 546, 882
BseNI	ACTGG	1 cut(s)	970
BseSI	GKGCMC	1 cut(s)	1015
BseXI	GCAGC	5 cut(s)	26, 29, 32, 159, 676
Bsh1285I	CGRYCG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	5, 443, 530
BshTI	ACCGGT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	88
BsiHKAI	GWGCWC	2 cut(s)	133, 1015
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	2 cut(s)	249, 795
BslI	CCNNNNNNNGG	4 cut(s)	526, 629, 681, 929
BsnI	GGCC	3 cut(s)	5, 443, 530
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	2 cut(s)	133, 1015
Bsp143I	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
BspANI	GGCC	3 cut(s)	5, 443, 530
BspCNI	CTCAG	4 cut(s)	135, 306, 545, 883
BspLI	GGNNCC	2 cut(s)	359, 903
BspPI	GGATC	5 cut(s)	502, 624, 909, 940, 977
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	970
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	88, 519, 680
BssMI	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
BssNI	GRCGYC	1 cut(s)	214
BssT1I	CCWWGG	1 cut(s)	680
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	89, 352
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	380, 843
BstDEI	CTNAG	6 cut(s)	143, 173, 293, 362, 532, 891
BstDSI	CCRYGG	1 cut(s)	88
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	3 cut(s)	47, 918, 951
BstKTI	GATC	8 cut(s)	329, 497, 544, 619, 814, 917, 935, 972
BstMBI	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
BstMCI	CGRYCG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 161, 698, 875, 1010
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	389
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	519, 793
BstSLI	GKGCMC	1 cut(s)	1015
BstV1I	GCAGC	5 cut(s)	26, 29, 32, 159, 676
BstV2I	GAAGAC	1 cut(s)	676
BstX2I	RGATCY	2 cut(s)	541, 914
BstYI	RGATCY	2 cut(s)	541, 914
BsuRI	GGCC	3 cut(s)	5, 443, 530
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	47, 918, 951
BtsIMutI	CAGTG	1 cut(s)	942
Cac8I	GCNNGC	2 cut(s)	380, 843
Cfr10I	RCCGGY	1 cut(s)	248
CseI	GACGC	2 cut(s)	12, 222
Csp6I	GTAC	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	371, 406
CviAII	CATG	5 cut(s)	7, 220, 386, 635, 820
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	6 cut(s)	143, 173, 293, 362, 532, 891
DpnI	GATC	8 cut(s)	328, 496, 543, 618, 813, 916, 934, 971
DpnII	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco130I	CCWWGG	1 cut(s)	680
Eco147I	AGGCCT	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	900
Eco88I	CYCGRG	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	5 cut(s)	10, 223, 389, 638, 823
FalI	AAGNNNNNCTT	2 cut(s)	988, 1020
FatI	CATG	5 cut(s)	6, 219, 385, 634, 819
FauNDI	CATATG	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	15, 18, 21, 148, 690
FokI	GGATG	3 cut(s)	34, 905, 938
Fsp4HI	GCNGC	5 cut(s)	15, 18, 21, 148, 690
FspBI	CTAG	2 cut(s)	111, 278
GluI	GCNGC	5 cut(s)	15, 18, 21, 148, 690
HaeIII	GGCC	3 cut(s)	5, 443, 530
HapII	CCGG	2 cut(s)	249, 795
HgaI	GACGC	2 cut(s)	12, 222
Hin1I	GRCGYC	1 cut(s)	214
Hin1II	CATG	5 cut(s)	10, 223, 389, 638, 823
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	2 cut(s)	249, 795
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	27, 1013
Hpy188I	TCNGA	5 cut(s)	144, 296, 357, 535, 664
Hpy188III	TCNNGA	3 cut(s)	313, 324, 996
Hpy8I	GTNNAC	2 cut(s)	27, 1013
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	4 cut(s)	4, 410, 424, 1011
HpyCH4III	ACNGT	2 cut(s)	89, 352
HpyCH4IV	ACGT	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 161, 698, 875, 1010
HpyF3I	CTNAG	6 cut(s)	143, 173, 293, 362, 532, 891
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	214
Hsp92II	CATG	5 cut(s)	10, 223, 389, 638, 823
Kzo9I	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
LmnI	GCTCC	3 cut(s)	357, 653, 698
Lsp1109I	GCAGC	5 cut(s)	26, 29, 32, 159, 676
LweI	GCATC	1 cut(s)	744
MaeI	CTAG	2 cut(s)	111, 278
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	556, 802
MalI	GATC	8 cut(s)	328, 496, 543, 618, 813, 916, 934, 971
MboI	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
MboII	GAAGA	4 cut(s)	380, 551, 681, 806
MflI	RGATCY	2 cut(s)	541, 914
MhlI	GDGCHC	2 cut(s)	133, 1015
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	80, 746
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	594
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	332, 878
MspI	CCGG	2 cut(s)	249, 795
MspR9I	CCNGG	2 cut(s)	521, 795
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 161, 698, 875, 1010
NciI	CCSGG	1 cut(s)	795
NdeI	CATATG	1 cut(s)	694
NdeII	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
NlaIII	CATG	5 cut(s)	10, 223, 389, 638, 823
NlaIV	GGNNCC	2 cut(s)	359, 903
NmuCI	GTSAC	1 cut(s)	556
NsiI	ATGCAT	1 cut(s)	505
NspI	RCATGY	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	530
PciI	ACATGT	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	344
PinAI	ACCGGT	1 cut(s)	248
PkrI	GCNGC	5 cut(s)	16, 19, 22, 149, 691
PscI	ACATGT	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	90
PshBI	ATTAAT	1 cut(s)	483
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	359, 903
PspXI	VCTCGAGB	1 cut(s)	624
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PsuI	RGATCY	2 cut(s)	541, 914
PvuII	CAGCTG	2 cut(s)	332, 878
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	15, 18, 21, 148, 690
Sau3AI	GATC	8 cut(s)	326, 494, 541, 616, 811, 914, 932, 969
ScrFI	CCNGG	2 cut(s)	521, 795
SduI	GDGCHC	2 cut(s)	133, 1015
SfaNI	GCATC	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	624
SlaI	CTCGAG	1 cut(s)	624
SmlI	CTYRAG	3 cut(s)	322, 624, 994
SmoI	CTYRAG	3 cut(s)	322, 624, 994
SpeI	ACTAGT	1 cut(s)	110
Sse9I	AATT	2 cut(s)	80, 746
SseBI	AGGCCT	1 cut(s)	530
SspMI	CTAG	2 cut(s)	111, 278
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	2 cut(s)	519, 793
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	89, 352
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	84, 625, 1035
TasI	AATT	2 cut(s)	80, 746
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	942
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	5 cut(s)	14, 17, 20, 147, 689
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	23, 552, 844
TspGWI	ACGGA	1 cut(s)	944
TspRI	CASTG	1 cut(s)	942
VneI	GTGCAC	1 cut(s)	1011
VspI	ATTAAT	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	524
XceI	RCATGY	1 cut(s)	389
XhoI	CTCGAG	1 cut(s)	624
XspI	CTAG	2 cut(s)	111, 278
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.